Wall clock time and date at job start Tue Mar 31 2020 21:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99661 * 2 1 4 4 C 1.46894 * 111.00088 * 123.95297 * 2 1 3 5 5 C 1.52995 * 109.47357 * 170.00361 * 4 2 1 6 6 C 1.53002 * 109.47427 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47088 * 179.97438 * 6 5 4 8 8 C 1.46506 * 119.99537 * 269.99330 * 7 6 5 9 9 C 1.50699 * 109.47106 * 270.00004 * 8 7 6 10 10 H 1.07999 * 120.00463 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99855 * 180.02562 * 9 8 7 12 12 N 1.31506 * 119.99824 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99715 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47172 * 90.00201 * 13 11 9 15 15 H 1.48505 * 109.46881 * 209.99904 * 13 11 9 16 16 H 1.48497 * 109.47562 * 329.99812 * 13 11 9 17 17 C 1.34777 * 120.00199 * 89.99979 * 7 6 5 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 7 6 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 7 6 20 20 C 1.50700 * 109.46869 * 179.72354 * 19 17 7 21 21 C 1.38264 * 119.93461 * 269.72057 * 20 19 17 22 22 C 1.38179 * 120.09375 * 179.77027 * 21 20 19 23 23 C 1.38655 * 119.96828 * 0.50833 * 22 21 20 24 24 O 1.35961 * 120.06527 * 179.72648 * 23 22 21 25 25 C 1.38908 * 119.87626 * 359.74529 * 23 22 21 26 26 F 1.35102 * 120.04855 * 179.97438 * 25 23 22 27 27 C 1.38250 * 119.93793 * 90.00078 * 20 19 17 28 28 H 1.08996 * 109.47186 * 296.04682 * 1 2 3 29 29 H 1.09006 * 109.47446 * 56.04651 * 1 2 3 30 30 H 1.09000 * 109.47243 * 176.04502 * 1 2 3 31 31 H 1.09002 * 109.47006 * 183.95504 * 3 2 1 32 32 H 1.09000 * 109.46986 * 303.95089 * 3 2 1 33 33 H 1.08994 * 109.47119 * 63.95373 * 3 2 1 34 34 H 1.09006 * 109.47229 * 49.99881 * 4 2 1 35 35 H 1.09005 * 109.46948 * 290.00086 * 4 2 1 36 36 H 1.08999 * 109.46986 * 59.99459 * 5 4 2 37 37 H 1.09005 * 109.46868 * 299.99774 * 5 4 2 38 38 H 1.09001 * 109.46980 * 59.99515 * 6 5 4 39 39 H 1.09005 * 109.46685 * 299.99608 * 6 5 4 40 40 H 1.08994 * 109.46996 * 30.00327 * 8 7 6 41 41 H 1.09001 * 109.46578 * 150.00190 * 8 7 6 42 42 H 0.97009 * 119.99797 * 179.97438 * 12 11 9 43 43 H 1.09004 * 109.46965 * 299.72211 * 19 17 7 44 44 H 1.08994 * 109.46990 * 59.72065 * 19 17 7 45 45 H 1.08002 * 119.95263 * 0.02562 * 21 20 19 46 46 H 1.07997 * 120.01636 * 180.25143 * 22 21 20 47 47 H 0.96703 * 113.99576 * 270.02356 * 24 23 22 48 48 H 1.08005 * 119.98588 * 359.95352 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 3.5044 -0.9552 0.9704 6 6 4.0527 -1.7535 2.1549 7 7 5.4974 -1.9353 1.9944 8 6 6.0136 -3.1066 1.2817 9 6 6.2352 -4.2320 2.2591 10 1 6.0134 -4.0894 3.3063 11 6 6.7212 -5.4440 1.8162 12 7 6.9141 -6.4262 2.6691 13 14 7.1056 -5.6905 0.0049 14 1 8.5168 -5.3102 -0.2578 15 1 6.9023 -7.1170 -0.3545 16 1 6.2034 -4.8406 -0.8128 17 6 6.3517 -1.0251 2.5026 18 8 5.9243 -0.0553 3.0924 19 6 7.8377 -1.2089 2.3322 20 6 8.5638 -0.0587 2.9809 21 6 8.8584 1.0743 2.2451 22 6 9.5198 2.1328 2.8379 23 6 9.8981 2.0548 4.1695 24 8 10.5539 3.0930 4.7532 25 6 9.6062 0.9139 4.9061 26 9 9.9737 0.8339 6.2037 27 6 8.9392 -0.1407 4.3089 28 1 -0.3633 0.4512 0.9232 29 1 -0.3634 0.5740 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0827 1.3433 -0.0709 32 1 1.5897 1.9163 -0.8525 33 1 1.7043 1.8723 0.9232 34 1 1.5089 -1.7406 1.1756 35 1 1.7975 -0.2246 2.0628 36 1 3.9908 0.0195 0.9323 37 1 3.7024 -1.4965 0.0452 38 1 3.5661 -2.7282 2.1925 39 1 3.8547 -1.2126 3.0803 40 1 5.2931 -3.4184 0.5257 41 1 6.9580 -2.8519 0.8005 42 1 7.2557 -7.2790 2.3575 43 1 8.1445 -2.1435 2.8019 44 1 8.0806 -1.2393 1.2701 45 1 8.5674 1.1336 1.2067 46 1 9.7456 3.0188 2.2631 47 1 11.5168 3.0401 4.6814 48 1 8.7113 -1.0283 4.8805 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448802392.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:21 Heat of formation + Delta-G solvation = -117.329519 kcal Electronic energy + Delta-G solvation = -29415.078950 eV Core-core repulsion = 25190.880075 eV Total energy + Delta-G solvation = -4224.198875 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.96863 -41.21721 -40.24460 -38.67784 -37.93034 -36.82979 -34.73436 -33.57040 -32.50570 -31.65663 -29.79683 -28.59570 -28.46624 -26.69759 -24.46282 -24.05772 -23.87230 -22.68461 -21.77199 -19.96220 -19.60998 -19.03986 -18.12101 -17.97136 -17.79786 -17.15944 -17.01368 -16.51991 -16.41197 -16.17172 -16.04821 -15.76263 -15.52990 -15.06311 -14.96431 -14.94064 -14.73560 -14.44485 -14.19517 -13.77014 -13.63942 -13.37617 -13.28408 -13.00785 -12.96597 -12.79647 -12.69025 -12.62697 -12.59045 -12.40265 -12.33931 -12.20078 -11.94980 -11.66661 -11.62481 -11.50327 -10.82886 -10.70978 -9.94745 -9.52829 -9.43108 -9.33781 -8.26594 -6.34697 0.00023 0.13565 1.44422 1.47052 1.56033 1.74032 2.17160 2.38437 2.53627 2.94391 3.04737 3.08350 3.29570 3.61141 3.75945 3.80622 4.01733 4.12516 4.19398 4.20682 4.23084 4.40508 4.43275 4.45880 4.50065 4.62762 4.63230 4.66636 4.72420 4.77885 4.80870 4.87054 4.92372 4.97145 4.99870 5.01203 5.02717 5.13799 5.16151 5.28308 5.46686 5.48539 5.70767 5.74607 6.03767 6.10344 6.20778 6.62616 6.70951 6.72845 7.25762 7.36756 8.89708 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.006719 B = 0.003960 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4166.393090 B = 7068.426239 C =10288.585889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.560 5.560 3 C 0.023 3.977 4 C 0.062 3.938 5 C -0.111 4.111 6 C 0.120 3.880 7 N -0.594 5.594 8 C 0.216 3.784 9 C -0.541 4.541 10 H 0.027 0.973 11 C 0.019 3.981 12 N -0.945 5.945 13 Si 0.940 3.060 14 H -0.258 1.258 15 H -0.291 1.291 16 H -0.235 1.235 17 C 0.517 3.483 18 O -0.586 6.586 19 C -0.100 4.100 20 C -0.045 4.045 21 C -0.096 4.096 22 C -0.108 4.108 23 C 0.069 3.931 24 O -0.498 6.498 25 C 0.050 3.950 26 F -0.147 7.147 27 C -0.142 4.142 28 H 0.026 0.974 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.022 0.978 34 H 0.082 0.918 35 H 0.031 0.969 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.267 0.733 43 H 0.103 0.897 44 H 0.132 0.868 45 H 0.159 0.841 46 H 0.171 0.829 47 H 0.411 0.589 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.209 16.090 -8.104 18.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.284 5.284 3 C -0.126 4.126 4 C -0.066 4.066 5 C -0.150 4.150 6 C -0.003 4.003 7 N -0.323 5.323 8 C 0.094 3.906 9 C -0.580 4.580 10 H 0.045 0.955 11 C -0.179 4.179 12 N -0.584 5.584 13 Si 0.762 3.238 14 H -0.182 1.182 15 H -0.217 1.217 16 H -0.158 1.158 17 C 0.307 3.693 18 O -0.468 6.468 19 C -0.139 4.139 20 C -0.046 4.046 21 C -0.114 4.114 22 C -0.126 4.126 23 C 0.023 3.977 24 O -0.311 6.311 25 C 0.031 3.969 26 F -0.125 7.125 27 C -0.161 4.161 28 H 0.044 0.956 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.041 0.959 34 H 0.100 0.900 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.121 0.879 44 H 0.150 0.850 45 H 0.176 0.824 46 H 0.189 0.811 47 H 0.271 0.729 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.358 16.362 -8.029 18.229 hybrid contribution 0.393 -0.845 1.159 1.487 sum 0.035 15.517 -6.870 16.970 Atomic orbital electron populations 1.22435 0.86081 1.02885 1.00993 1.61986 1.09026 1.14415 1.42998 1.22440 1.00896 0.88429 1.00789 1.21989 0.94657 0.98676 0.91299 1.21744 0.95033 1.00000 0.98240 1.21298 0.80238 1.00376 0.98417 1.47939 1.06236 1.23116 1.55007 1.19698 0.96218 0.82613 0.92058 1.21527 1.44351 0.97274 0.94836 0.95454 1.25802 0.94382 0.95052 1.02710 1.70065 1.46454 1.04560 1.37330 0.85827 0.80453 0.78035 0.79447 1.18205 1.21696 1.15829 1.20691 0.89327 0.81661 0.77642 1.90621 1.80043 1.31861 1.44268 1.20717 0.90393 0.98206 1.04616 1.19358 0.96516 0.96056 0.92676 1.21279 0.97173 0.91409 1.01565 1.21542 0.98602 1.00059 0.92370 1.18499 1.00832 0.86401 0.91951 1.84822 1.25437 1.42133 1.78662 1.18268 1.03333 0.96047 0.79288 1.91443 1.89952 1.96707 1.34428 1.21028 1.00235 0.98714 0.96132 0.95579 0.90121 0.90880 0.91863 0.89971 0.95910 0.89987 0.95121 0.92526 0.91095 0.90624 0.92202 0.93496 0.92715 0.92366 0.87917 0.85026 0.82351 0.81139 0.72947 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.57 127.69 1.22 1.65 16 2 N -0.56 -12.71 5.02 -948.86 -4.76 -17.47 16 3 C 0.02 0.47 9.32 127.69 1.19 1.66 16 4 C 0.06 1.55 4.96 86.30 0.43 1.98 16 5 C -0.11 -3.19 5.46 30.59 0.17 -3.02 16 6 C 0.12 4.16 5.41 86.38 0.47 4.62 16 7 N -0.59 -22.59 2.46 -826.14 -2.03 -24.62 16 8 C 0.22 8.62 4.04 85.63 0.35 8.96 16 9 C -0.54 -27.63 9.86 25.60 0.25 -27.37 16 10 H 0.03 1.63 8.06 -2.91 -0.02 1.61 16 11 C 0.02 1.01 5.47 84.66 0.46 1.47 16 12 N -0.94 -54.96 13.96 21.45 0.30 -54.66 16 13 Si 0.94 37.98 27.47 68.60 1.88 39.87 16 14 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 15 H -0.29 -12.09 7.11 99.48 0.71 -11.39 16 16 H -0.24 -8.42 6.54 99.48 0.65 -7.77 16 17 C 0.52 19.65 7.67 87.66 0.67 20.33 16 18 O -0.59 -24.98 15.61 -3.04 -0.05 -25.02 16 19 C -0.10 -3.19 4.38 29.10 0.13 -3.06 16 20 C -0.05 -1.35 4.37 -19.86 -0.09 -1.44 16 21 C -0.10 -2.27 9.69 22.26 0.22 -2.05 16 22 C -0.11 -2.28 9.98 22.36 0.22 -2.06 16 23 C 0.07 1.75 6.71 22.53 0.15 1.90 16 24 O -0.50 -10.72 13.37 -93.11 -1.24 -11.97 16 25 C 0.05 1.54 7.31 22.45 0.16 1.71 16 26 F -0.15 -4.76 17.11 44.97 0.77 -3.99 16 27 C -0.14 -4.60 9.67 22.29 0.22 -4.39 16 28 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.08 1.19 8.12 -2.38 -0.02 1.17 16 30 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 31 H 0.06 1.41 6.47 -2.39 -0.02 1.40 16 32 H 0.08 1.38 8.12 -2.39 -0.02 1.36 16 33 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.08 1.93 8.06 -2.38 -0.02 1.91 16 35 H 0.03 0.78 8.12 -2.38 -0.02 0.76 16 36 H 0.06 1.71 6.55 -2.39 -0.02 1.70 16 37 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.08 2.64 8.07 -2.39 -0.02 2.62 16 39 H 0.06 2.21 7.42 -2.38 -0.02 2.19 16 40 H 0.05 1.80 7.13 -2.39 -0.02 1.79 16 41 H 0.05 1.95 5.86 -2.39 -0.01 1.94 16 42 H 0.27 14.58 8.31 -92.70 -0.77 13.81 16 43 H 0.10 3.65 7.97 -2.38 -0.02 3.63 16 44 H 0.13 3.32 7.34 -2.39 -0.02 3.31 16 45 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 46 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 47 H 0.41 4.42 9.06 -74.06 -0.67 3.75 16 48 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -70.05 401.02 1.33 -68.72 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: 0.24 Total: 28.26 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 6.22 Total: 0.87 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -6.49 Total: -96.74 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -1.29 Total: -36.99 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.77 Total: -3.99 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 1.88 Total: 39.87 kcal Total: -70.05 1.33 -68.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448802392.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.606 kcal (2) G-P(sol) polarization free energy of solvation -70.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds