Wall clock time and date at job start Tue Mar 31 2020 21:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 120.00294 * 2 1 4 4 C 1.50700 * 109.47143 * 270.00186 * 3 2 1 5 5 H 1.07998 * 119.99759 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00008 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99931 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99745 * 179.97438 * 6 4 3 9 9 H 1.48492 * 109.47532 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46995 * 120.00132 * 8 6 4 11 11 H 1.48499 * 109.47205 * 239.99832 * 8 6 4 12 12 C 1.34783 * 119.99674 * 180.02562 * 2 1 3 13 13 O 1.21281 * 119.99593 * 180.02562 * 12 2 1 14 14 C 1.50696 * 120.00134 * 359.97438 * 12 2 1 15 15 C 1.52997 * 109.47097 * 180.02562 * 14 12 2 16 16 N 1.46901 * 109.47008 * 180.02562 * 15 14 12 17 17 C 1.46900 * 111.00123 * 66.04997 * 16 15 14 18 18 C 1.52991 * 109.47050 * 52.33981 * 17 16 15 19 19 O 1.42896 * 109.47292 * 65.40474 * 18 17 16 20 20 C 1.46907 * 111.00119 * 190.00453 * 16 15 14 21 21 C 1.50695 * 109.47242 * 161.32327 * 20 16 15 22 22 C 1.38276 * 119.98453 * 273.29873 * 21 20 16 23 23 C 1.38221 * 120.04948 * 180.25482 * 22 21 20 24 24 C 1.38224 * 120.02516 * 359.49684 * 23 22 21 25 25 C 1.38431 * 119.97448 * 0.24690 * 24 23 22 26 26 F 1.35099 * 120.02752 * 179.97438 * 25 24 23 27 27 C 1.38176 * 119.98951 * 93.04916 * 21 20 16 28 28 H 1.09003 * 109.47099 * 269.99839 * 1 2 3 29 29 H 1.09004 * 109.47234 * 30.00009 * 1 2 3 30 30 H 1.08995 * 109.47711 * 149.99920 * 1 2 3 31 31 H 1.08992 * 109.47037 * 29.99938 * 3 2 1 32 32 H 1.09000 * 109.47050 * 150.00287 * 3 2 1 33 33 H 0.97002 * 120.00250 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.46959 * 60.00573 * 14 12 2 35 35 H 1.09002 * 109.47429 * 300.00691 * 14 12 2 36 36 H 1.09002 * 109.46879 * 60.00866 * 15 14 12 37 37 H 1.09002 * 109.47488 * 300.00584 * 15 14 12 38 38 H 1.08998 * 109.47256 * 172.34281 * 17 16 15 39 39 H 1.09000 * 109.46690 * 292.33735 * 17 16 15 40 40 H 1.09003 * 109.47174 * 185.40243 * 18 17 16 41 41 H 1.09005 * 109.47222 * 305.40005 * 18 17 16 42 42 H 0.96701 * 114.00307 * 180.02562 * 19 18 17 43 43 H 1.08998 * 109.47074 * 41.31979 * 20 16 15 44 44 H 1.09003 * 109.46639 * 281.32383 * 20 16 15 45 45 H 1.08001 * 119.97566 * 0.02884 * 22 21 20 46 46 H 1.07997 * 119.98667 * 179.77012 * 23 22 21 47 47 H 1.08001 * 120.01078 * 180.23073 * 24 23 22 48 48 H 1.07993 * 120.01010 * 0.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1260 2.8779 -1.6727 7 7 3.5525 3.6185 -0.6732 8 14 3.4379 3.4167 -3.4339 9 1 2.8608 2.4164 -4.3673 10 1 2.7999 4.7371 -3.6679 11 1 4.9005 3.5256 -3.6666 12 6 2.1388 -1.1673 -0.0005 13 8 3.3516 -1.1673 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6353 -0.0005 16 7 1.6449 -4.9074 -0.0011 17 6 0.8999 -5.0846 -1.2548 18 6 1.8457 -4.8911 -2.4417 19 8 2.8261 -5.9307 -2.4439 20 6 2.5512 -6.0388 0.2371 21 6 1.7528 -7.2369 0.6822 22 6 1.4537 -7.4093 2.0212 23 6 0.7260 -8.5105 2.4316 24 6 0.2876 -9.4352 1.5024 25 6 0.5819 -9.2608 0.1611 26 9 0.1544 -10.1643 -0.7479 27 6 1.3156 -8.1600 -0.2484 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1383 0.5138 33 1 4.0294 4.4444 -0.8503 34 1 0.7584 -2.5299 -0.8903 35 1 0.7588 -2.5303 0.8896 36 1 3.0060 -3.5776 0.8896 37 1 3.0062 -3.5775 -0.8904 38 1 0.4768 -6.0886 -1.2872 39 1 0.0965 -4.3499 -1.3068 40 1 1.2757 -4.9273 -3.3701 41 1 2.3416 -3.9241 -2.3573 42 1 3.4612 -5.8709 -3.1708 43 1 3.2692 -5.7721 1.0126 44 1 3.0831 -6.2783 -0.6837 45 1 1.7920 -6.6850 2.7473 46 1 0.4961 -8.6461 3.4780 47 1 -0.2842 -10.2936 1.8229 48 1 1.5463 -8.0232 -1.2945 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494284292.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:20 Heat of formation + Delta-G solvation = -92.493281 kcal Electronic energy + Delta-G solvation = -29423.201038 eV Core-core repulsion = 25200.079144 eV Total energy + Delta-G solvation = -4223.121895 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.05740 -39.93244 -39.03446 -38.13572 -35.88975 -34.80704 -32.78894 -32.42773 -30.74563 -30.64089 -29.02040 -27.75385 -25.94679 -25.23564 -24.18124 -22.86526 -22.65217 -21.55404 -20.10014 -18.34028 -17.85391 -17.38320 -16.87408 -16.58460 -16.49729 -16.33119 -16.24798 -15.75689 -15.34289 -14.90244 -14.81746 -14.65141 -14.18645 -13.95854 -13.76903 -13.46890 -13.29057 -13.08463 -12.56940 -12.48076 -12.27772 -12.20445 -12.13383 -12.07977 -11.87688 -11.65151 -11.61179 -11.32375 -11.20971 -11.00480 -10.89340 -10.78528 -10.57835 -10.18623 -10.02864 -9.63264 -9.18685 -8.91126 -8.83936 -8.46421 -8.24414 -7.64867 -6.06773 -4.11559 0.97621 1.02420 3.26797 3.30385 3.33930 3.36955 3.44820 3.77466 3.97200 4.05318 4.25228 4.43024 4.53763 4.60993 4.84898 4.88668 4.99838 5.05607 5.08947 5.16338 5.17928 5.26059 5.29463 5.33265 5.39337 5.54571 5.62676 5.66134 5.74589 5.82118 5.88617 5.91429 5.93346 6.02448 6.08568 6.13690 6.19744 6.20867 6.41810 6.72466 6.96265 6.99527 7.05867 7.35928 7.43131 7.53070 7.89710 8.21346 8.41634 8.88128 9.08864 9.53568 11.01326 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021239 B = 0.002244 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.039262 B =12473.675639 C =13088.506846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.504 3.496 13 O -0.546 6.546 14 C -0.135 4.135 15 C 0.067 3.933 16 N -0.528 5.528 17 C 0.048 3.952 18 C 0.029 3.971 19 O -0.565 6.565 20 C 0.069 3.931 21 C -0.036 4.036 22 C -0.112 4.112 23 C -0.095 4.095 24 C -0.160 4.160 25 C 0.091 3.909 26 F -0.144 7.144 27 C -0.144 4.144 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.048 0.952 41 H 0.061 0.939 42 H 0.374 0.626 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.130 0.870 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.053 -23.861 2.338 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.563 4.563 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.290 3.710 13 O -0.424 6.424 14 C -0.176 4.176 15 C -0.061 4.061 16 N -0.250 5.250 17 C -0.081 4.081 18 C -0.050 4.050 19 O -0.372 6.372 20 C -0.058 4.058 21 C -0.037 4.037 22 C -0.130 4.130 23 C -0.113 4.113 24 C -0.179 4.179 25 C 0.072 3.928 26 F -0.123 7.123 27 C -0.163 4.163 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.222 0.778 43 H 0.097 0.903 44 H 0.114 0.886 45 H 0.147 0.853 46 H 0.148 0.852 47 H 0.148 0.852 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.003 -23.843 3.271 25.363 hybrid contribution 0.704 0.517 -2.334 2.492 sum -7.299 -23.326 0.937 24.459 Atomic orbital electron populations 1.21630 0.81447 1.02475 1.00456 1.48165 1.06184 1.07902 1.71303 1.19285 0.92576 0.78193 0.97462 1.21452 1.36396 1.06199 0.92299 0.92539 1.24947 0.95425 0.96422 0.97414 1.69940 1.38432 1.14318 1.30643 0.86447 0.78079 0.78316 0.84585 1.19890 1.20941 1.20868 1.20310 0.88068 0.85169 0.77436 1.90665 1.13991 1.87378 1.50375 1.21645 0.99305 0.92720 1.03920 1.21920 0.94772 0.86585 1.02803 1.62133 1.27963 1.01809 1.33129 1.22418 0.95972 1.03355 0.86321 1.23101 0.91167 0.91279 0.99453 1.86417 1.45255 1.51915 1.53660 1.21551 0.93288 0.87863 1.03068 1.19703 0.96442 0.94882 0.92684 1.21177 0.98523 0.97530 0.95798 1.21000 0.97160 0.93713 0.99392 1.21106 1.03576 1.01735 0.91527 1.17727 0.99343 0.89080 0.86691 1.91486 1.88190 1.66004 1.66622 1.21172 0.99905 0.93981 1.01271 0.93702 0.90885 0.92466 0.95044 0.93853 0.92755 0.89853 0.88827 0.89952 0.93044 0.89965 0.89078 0.93350 0.92130 0.77785 0.90293 0.88606 0.85291 0.85214 0.85192 0.84482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.24 59.84 0.61 1.91 16 2 N -0.60 -12.59 2.86 -182.96 -0.52 -13.11 16 3 C 0.24 6.36 5.16 -5.19 -0.03 6.33 16 4 C -0.52 -14.77 9.39 -34.44 -0.32 -15.09 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.50 10.11 7.67 -10.98 -0.08 10.03 16 13 O -0.55 -13.34 15.56 5.56 0.09 -13.26 16 14 C -0.14 -1.90 4.18 -27.89 -0.12 -2.01 16 15 C 0.07 0.89 3.83 -3.83 -0.01 0.88 16 16 N -0.53 -5.87 4.64 -236.07 -1.09 -6.96 16 17 C 0.05 0.48 5.43 -3.83 -0.02 0.46 16 18 C 0.03 0.28 6.74 37.15 0.25 0.53 16 19 O -0.57 -5.17 10.35 -35.23 -0.36 -5.53 16 20 C 0.07 0.73 5.00 -4.97 -0.02 0.70 16 21 C -0.04 -0.37 5.07 -104.63 -0.53 -0.90 16 22 C -0.11 -1.02 9.71 -39.57 -0.38 -1.41 16 23 C -0.09 -0.77 10.04 -39.59 -0.40 -1.17 16 24 C -0.16 -1.42 10.03 -39.52 -0.40 -1.81 16 25 C 0.09 0.94 7.30 -39.42 -0.29 0.65 16 26 F -0.14 -1.61 17.27 2.25 0.04 -1.57 16 27 C -0.14 -1.48 8.25 -39.51 -0.33 -1.81 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 30 H 0.06 0.71 6.44 -51.93 -0.33 0.38 16 31 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.08 1.03 5.98 -51.93 -0.31 0.72 16 35 H 0.09 1.18 8.11 -51.93 -0.42 0.76 16 36 H 0.08 1.19 7.79 -51.93 -0.40 0.79 16 37 H 0.05 0.76 5.68 -51.93 -0.29 0.46 16 38 H 0.08 0.83 5.97 -51.93 -0.31 0.52 16 39 H 0.09 0.85 6.85 -51.93 -0.36 0.49 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.70 5.87 -51.93 -0.30 0.39 16 42 H 0.37 2.21 9.12 45.64 0.42 2.62 16 43 H 0.08 0.82 7.72 -51.93 -0.40 0.42 16 44 H 0.10 1.06 4.50 -51.86 -0.23 0.82 16 45 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 46 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 47 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 48 H 0.14 1.40 7.77 -52.49 -0.41 0.99 16 LS Contribution 390.27 15.07 5.88 5.88 Total: -1.00 -33.70 390.27 -8.67 -42.37 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.25 Total: 2.38 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -2.17 Total: -1.11 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: -0.88 Total: -45.84 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.28 Total: -18.79 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.70 -8.67 -42.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494284292.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.119 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds