Wall clock time and date at job start Tue Mar 31 2020 21:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 120.00294 * 2 1 4 4 C 1.50700 * 109.47143 * 270.00186 * 3 2 1 5 5 H 1.07998 * 119.99759 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00008 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99931 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99745 * 179.97438 * 6 4 3 9 9 H 1.48492 * 109.47532 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46995 * 120.00132 * 8 6 4 11 11 H 1.48499 * 109.47205 * 239.99832 * 8 6 4 12 12 C 1.34783 * 119.99674 * 180.02562 * 2 1 3 13 13 O 1.21281 * 119.99593 * 180.02562 * 12 2 1 14 14 C 1.50696 * 120.00134 * 359.97438 * 12 2 1 15 15 C 1.52997 * 109.47097 * 180.02562 * 14 12 2 16 16 N 1.46901 * 109.47008 * 180.02562 * 15 14 12 17 17 C 1.46900 * 111.00123 * 66.04997 * 16 15 14 18 18 C 1.52991 * 109.47050 * 52.33981 * 17 16 15 19 19 O 1.42896 * 109.47292 * 65.40474 * 18 17 16 20 20 C 1.46907 * 111.00119 * 190.00453 * 16 15 14 21 21 C 1.50695 * 109.47242 * 161.32327 * 20 16 15 22 22 C 1.38276 * 119.98453 * 273.29873 * 21 20 16 23 23 C 1.38221 * 120.04948 * 180.25482 * 22 21 20 24 24 C 1.38224 * 120.02516 * 359.49684 * 23 22 21 25 25 C 1.38431 * 119.97448 * 0.24690 * 24 23 22 26 26 F 1.35099 * 120.02752 * 179.97438 * 25 24 23 27 27 C 1.38176 * 119.98951 * 93.04916 * 21 20 16 28 28 H 1.09003 * 109.47099 * 269.99839 * 1 2 3 29 29 H 1.09004 * 109.47234 * 30.00009 * 1 2 3 30 30 H 1.08995 * 109.47711 * 149.99920 * 1 2 3 31 31 H 1.08992 * 109.47037 * 29.99938 * 3 2 1 32 32 H 1.09000 * 109.47050 * 150.00287 * 3 2 1 33 33 H 0.97002 * 120.00250 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.46959 * 60.00573 * 14 12 2 35 35 H 1.09002 * 109.47429 * 300.00691 * 14 12 2 36 36 H 1.09002 * 109.46879 * 60.00866 * 15 14 12 37 37 H 1.09002 * 109.47488 * 300.00584 * 15 14 12 38 38 H 1.08998 * 109.47256 * 172.34281 * 17 16 15 39 39 H 1.09000 * 109.46690 * 292.33735 * 17 16 15 40 40 H 1.09003 * 109.47174 * 185.40243 * 18 17 16 41 41 H 1.09005 * 109.47222 * 305.40005 * 18 17 16 42 42 H 0.96701 * 114.00307 * 180.02562 * 19 18 17 43 43 H 1.08998 * 109.47074 * 41.31979 * 20 16 15 44 44 H 1.09003 * 109.46639 * 281.32383 * 20 16 15 45 45 H 1.08001 * 119.97566 * 0.02884 * 22 21 20 46 46 H 1.07997 * 119.98667 * 179.77012 * 23 22 21 47 47 H 1.08001 * 120.01078 * 180.23073 * 24 23 22 48 48 H 1.07993 * 120.01010 * 0.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1260 2.8779 -1.6727 7 7 3.5525 3.6185 -0.6732 8 14 3.4379 3.4167 -3.4339 9 1 2.8608 2.4164 -4.3673 10 1 2.7999 4.7371 -3.6679 11 1 4.9005 3.5256 -3.6666 12 6 2.1388 -1.1673 -0.0005 13 8 3.3516 -1.1673 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 6 2.3795 -3.6353 -0.0005 16 7 1.6449 -4.9074 -0.0011 17 6 0.8999 -5.0846 -1.2548 18 6 1.8457 -4.8911 -2.4417 19 8 2.8261 -5.9307 -2.4439 20 6 2.5512 -6.0388 0.2371 21 6 1.7528 -7.2369 0.6822 22 6 1.4537 -7.4093 2.0212 23 6 0.7260 -8.5105 2.4316 24 6 0.2876 -9.4352 1.5024 25 6 0.5819 -9.2608 0.1611 26 9 0.1544 -10.1643 -0.7479 27 6 1.3156 -8.1600 -0.2484 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1383 0.5138 33 1 4.0294 4.4444 -0.8503 34 1 0.7584 -2.5299 -0.8903 35 1 0.7588 -2.5303 0.8896 36 1 3.0060 -3.5776 0.8896 37 1 3.0062 -3.5775 -0.8904 38 1 0.4768 -6.0886 -1.2872 39 1 0.0965 -4.3499 -1.3068 40 1 1.2757 -4.9273 -3.3701 41 1 2.3416 -3.9241 -2.3573 42 1 3.4612 -5.8709 -3.1708 43 1 3.2692 -5.7721 1.0126 44 1 3.0831 -6.2783 -0.6837 45 1 1.7920 -6.6850 2.7473 46 1 0.4961 -8.6461 3.4780 47 1 -0.2842 -10.2936 1.8229 48 1 1.5463 -8.0232 -1.2945 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494284292.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:20 Heat of formation + Delta-G solvation = -116.098144 kcal Electronic energy + Delta-G solvation = -29424.224622 eV Core-core repulsion = 25200.079144 eV Total energy + Delta-G solvation = -4224.145479 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.85192 -40.96066 -40.29666 -39.01957 -36.77520 -36.48263 -34.74811 -33.45136 -31.73421 -31.45601 -30.01803 -29.40998 -27.33012 -26.39514 -25.35627 -24.21247 -23.55543 -22.48442 -21.04630 -19.83279 -18.72037 -18.61012 -18.13842 -17.91092 -17.69887 -17.15329 -17.04279 -17.00151 -16.57620 -16.32018 -16.17039 -15.84962 -15.36541 -14.72343 -14.70760 -14.56435 -14.20381 -14.16552 -14.00790 -13.76282 -13.58398 -13.45658 -13.29402 -13.14917 -13.01780 -12.83873 -12.78945 -12.68193 -12.49562 -12.39754 -12.21104 -12.12485 -11.92475 -11.70173 -11.65568 -10.80956 -10.65728 -10.57834 -9.89065 -9.57952 -9.39827 -9.13540 -8.22847 -6.37775 0.25385 0.32113 1.35679 1.37739 1.49433 1.87266 2.28505 2.41190 2.65945 3.06341 3.08979 3.31313 3.41004 3.81002 3.85089 3.91898 4.01150 4.10438 4.16268 4.19730 4.30686 4.37442 4.43660 4.47389 4.50128 4.58317 4.68205 4.74800 4.75498 4.88482 4.97164 4.98829 5.00326 5.06735 5.13810 5.16908 5.23067 5.24410 5.27815 5.44796 5.56631 5.67607 5.85140 6.00688 6.05927 6.06672 6.10605 6.70088 6.78651 6.81761 7.28285 7.50972 8.84349 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021239 B = 0.002244 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.039262 B =12473.675639 C =13088.506846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.258 3.742 4 C -0.539 4.539 5 H 0.053 0.947 6 C 0.005 3.995 7 N -0.929 5.929 8 Si 0.968 3.032 9 H -0.266 1.266 10 H -0.270 1.270 11 H -0.282 1.282 12 C 0.495 3.505 13 O -0.601 6.601 14 C -0.115 4.115 15 C 0.076 3.924 16 N -0.521 5.521 17 C 0.045 3.955 18 C 0.033 3.967 19 O -0.575 6.575 20 C 0.070 3.930 21 C -0.045 4.045 22 C -0.116 4.116 23 C -0.090 4.090 24 C -0.159 4.159 25 C 0.072 3.928 26 F -0.153 7.153 27 C -0.149 4.149 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.022 0.978 32 H -0.003 1.003 33 H 0.267 0.733 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.041 0.959 42 H 0.387 0.613 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.138 0.862 46 H 0.158 0.842 47 H 0.149 0.851 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.098 -25.244 1.901 27.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.578 4.578 5 H 0.072 0.928 6 C -0.194 4.194 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.190 1.190 10 H -0.195 1.195 11 H -0.208 1.208 12 C 0.284 3.716 13 O -0.483 6.483 14 C -0.155 4.155 15 C -0.052 4.052 16 N -0.243 5.243 17 C -0.083 4.083 18 C -0.046 4.046 19 O -0.384 6.384 20 C -0.056 4.056 21 C -0.045 4.045 22 C -0.135 4.135 23 C -0.107 4.107 24 C -0.178 4.178 25 C 0.053 3.947 26 F -0.132 7.132 27 C -0.168 4.168 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.040 0.960 32 H 0.015 0.985 33 H 0.076 0.924 34 H 0.127 0.873 35 H 0.137 0.863 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.238 0.762 43 H 0.094 0.906 44 H 0.109 0.891 45 H 0.156 0.844 46 H 0.176 0.824 47 H 0.167 0.833 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.098 -25.252 2.829 27.342 hybrid contribution 1.348 0.896 -2.139 2.682 sum -8.750 -24.355 0.691 25.888 Atomic orbital electron populations 1.21933 0.77825 1.03993 1.02604 1.48207 1.08456 1.06423 1.71249 1.18748 0.91080 0.80567 0.96015 1.21716 1.36624 1.06429 0.93008 0.92826 1.25886 0.95011 0.96497 1.01992 1.70060 1.39030 1.14821 1.33003 0.85356 0.77835 0.78425 0.79113 1.18985 1.19470 1.20826 1.21373 0.87781 0.86669 0.75759 1.90635 1.16728 1.88264 1.52633 1.21552 0.98905 0.88852 1.06208 1.21711 0.94473 0.87705 1.01301 1.62138 1.27434 1.00858 1.33899 1.22517 0.96089 1.03905 0.85794 1.23011 0.91147 0.90361 1.00065 1.86383 1.45656 1.51663 1.54662 1.21516 0.93338 0.87948 1.02807 1.19647 0.96972 0.94682 0.93238 1.21384 0.98438 0.98163 0.95519 1.21312 0.96013 0.92744 1.00676 1.21388 1.03161 1.02383 0.90876 1.17950 1.00161 0.89231 0.87345 1.91460 1.88379 1.66290 1.67059 1.21135 1.00254 0.94274 1.01141 0.91182 0.91731 0.88603 0.95990 0.98528 0.92425 0.87262 0.86265 0.91547 0.94806 0.89781 0.87753 0.91867 0.94113 0.76237 0.90616 0.89146 0.84393 0.82423 0.83315 0.84987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.24 10.24 127.77 1.31 3.55 16 2 N -0.61 -25.50 2.86 -851.15 -2.43 -27.93 16 3 C 0.26 13.91 5.16 85.63 0.44 14.35 16 4 C -0.54 -30.94 9.39 25.60 0.24 -30.70 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 6 C 0.00 0.28 5.46 84.66 0.46 0.74 16 7 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 8 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 9 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 12 C 0.50 19.91 7.67 87.65 0.67 20.58 16 13 O -0.60 -30.57 15.56 -3.03 -0.05 -30.62 16 14 C -0.12 -3.00 4.18 29.85 0.12 -2.88 16 15 C 0.08 2.00 3.83 86.30 0.33 2.33 16 16 N -0.52 -10.83 4.64 -900.80 -4.18 -15.01 16 17 C 0.04 0.81 5.43 86.30 0.47 1.28 16 18 C 0.03 0.60 6.74 71.98 0.48 1.09 16 19 O -0.57 -10.14 10.35 -148.98 -1.54 -11.68 16 20 C 0.07 1.44 5.00 85.55 0.43 1.87 16 21 C -0.04 -0.85 5.07 -19.87 -0.10 -0.95 16 22 C -0.12 -1.90 9.71 22.27 0.22 -1.69 16 23 C -0.09 -1.22 10.04 22.26 0.22 -0.99 16 24 C -0.16 -2.46 10.03 22.31 0.22 -2.23 16 25 C 0.07 1.41 7.30 22.37 0.16 1.57 16 26 F -0.15 -3.30 17.27 44.97 0.78 -2.52 16 27 C -0.15 -2.93 8.25 22.31 0.18 -2.74 16 28 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 1.96 8.07 -2.38 -0.02 1.94 16 30 H 0.10 1.99 6.44 -2.39 -0.02 1.98 16 31 H 0.02 1.21 8.07 -2.39 -0.02 1.19 16 32 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 33 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 34 H 0.11 2.33 5.98 -2.39 -0.01 2.31 16 35 H 0.12 2.58 8.11 -2.39 -0.02 2.56 16 36 H 0.07 1.95 7.79 -2.39 -0.02 1.93 16 37 H 0.03 1.01 5.68 -2.39 -0.01 1.00 16 38 H 0.08 1.54 5.97 -2.39 -0.01 1.52 16 39 H 0.10 1.59 6.85 -2.39 -0.02 1.58 16 40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.04 0.91 5.87 -2.38 -0.01 0.90 16 42 H 0.39 4.36 9.12 -73.93 -0.67 3.68 16 43 H 0.08 1.57 7.72 -2.39 -0.02 1.55 16 44 H 0.09 1.98 4.50 -2.34 -0.01 1.97 16 45 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 46 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 47 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 48 H 0.13 2.65 7.77 -2.91 -0.02 2.63 16 Total: -1.00 -76.13 390.27 1.07 -75.05 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.31 Total: 16.89 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 5.87 Total: 5.18 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -6.32 Total: -98.95 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -1.59 Total: -42.30 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.78 Total: -2.52 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -76.13 1.07 -75.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494284292.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.043 kcal (2) G-P(sol) polarization free energy of solvation -76.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds