Wall clock time and date at job start Tue Mar 31 2020 21:43:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46892 * 1
3 3 C 1.46906 * 111.00015 * 2 1
4 4 C 1.50696 * 109.47081 * 66.04466 * 3 2 1
5 5 H 1.08007 * 119.99952 * 359.97438 * 4 3 2
6 6 C 1.37876 * 119.99726 * 180.02562 * 4 3 2
7 7 N 1.31508 * 120.00049 * 359.97438 * 6 4 3
8 8 Si 1.86804 * 119.99640 * 179.97438 * 6 4 3
9 9 H 1.48492 * 109.47355 * 0.02562 * 8 6 4
10 10 H 1.48506 * 109.46935 * 120.00126 * 8 6 4
11 11 H 1.48500 * 109.47089 * 239.99514 * 8 6 4
12 12 C 1.46900 * 111.00727 * 236.04212 * 2 1 3
13 13 C 1.52993 * 109.47484 * 199.85321 * 12 2 1
14 14 H 1.09000 * 109.47254 * 300.45592 * 13 12 2
15 15 O 1.42892 * 109.47519 * 60.46507 * 13 12 2
16 16 C 1.53005 * 109.46788 * 180.46408 * 13 12 2
17 17 N 1.46904 * 109.46920 * 179.97438 * 16 13 12
18 18 C 1.46902 * 111.00009 * 179.97438 * 17 16 13
19 19 C 1.50699 * 109.46919 * 179.97438 * 18 17 16
20 20 C 1.32912 * 125.20822 * 90.00767 * 19 18 17
21 21 C 1.39207 * 115.70531 * 179.97438 * 20 19 18
22 22 C 1.34635 * 113.66589 * 0.02562 * 21 20 19
23 23 S 1.75732 * 125.20923 * 269.69563 * 19 18 17
24 24 C 1.51401 * 124.78555 * 179.97438 * 22 21 20
25 25 C 1.53167 * 108.70255 * 343.68176 * 24 22 21
26 26 C 1.53157 * 108.96528 * 49.66563 * 25 24 22
27 27 C 1.52274 * 123.50541 * 179.97438 * 21 20 19
28 28 H 1.09011 * 109.46964 * 188.77580 * 1 2 3
29 29 H 1.08995 * 109.47763 * 308.77752 * 1 2 3
30 30 H 1.09004 * 109.47279 * 68.78106 * 1 2 3
31 31 H 1.09001 * 109.46729 * 186.04452 * 3 2 1
32 32 H 1.08996 * 109.46621 * 306.04332 * 3 2 1
33 33 H 0.97002 * 120.00069 * 179.97438 * 7 6 4
34 34 H 1.09001 * 109.46732 * 79.84877 * 12 2 1
35 35 H 1.09003 * 109.46568 * 319.85719 * 12 2 1
36 36 H 0.96703 * 114.00182 * 59.99233 * 15 13 12
37 37 H 1.08992 * 109.47207 * 60.00010 * 16 13 12
38 38 H 1.09000 * 109.47010 * 299.99328 * 16 13 12
39 39 H 1.00903 * 111.00135 * 56.04559 * 17 16 13
40 40 H 1.09007 * 109.46869 * 60.00093 * 18 17 16
41 41 H 1.09000 * 109.47478 * 299.99950 * 18 17 16
42 42 H 1.08008 * 122.14488 * 359.96922 * 20 19 18
43 43 H 1.09000 * 109.60072 * 223.92130 * 24 22 21
44 44 H 1.09003 * 109.60089 * 103.44768 * 24 22 21
45 45 H 1.08998 * 109.55857 * 289.81617 * 25 24 22
46 46 H 1.09007 * 109.55802 * 169.50995 * 25 24 22
47 47 H 1.08996 * 109.49836 * 169.48878 * 26 25 24
48 48 H 1.09005 * 109.49653 * 49.38512 * 26 25 24
49 49 H 1.09003 * 109.58617 * 282.35669 * 27 21 20
50 50 H 1.09002 * 109.58279 * 42.76213 * 27 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.6368 2.0472 1.2984
5 1 1.0738 1.5115 2.0484
6 6 2.0267 3.3495 1.5284
7 7 2.7119 4.0019 0.6149
8 14 1.5816 4.1873 3.1376
9 1 0.8146 3.2447 3.9908
10 1 2.8231 4.5949 3.8433
11 1 0.7541 5.3883 2.8581
12 6 1.9955 -0.7660 -1.1375
13 6 3.4449 -1.1666 -0.8554
14 1 4.0464 -0.2706 -0.7026
15 8 3.4945 -1.9797 0.3186
16 6 3.9969 -1.9545 -2.0452
17 7 5.3888 -2.3387 -1.7746
18 6 5.9529 -3.0992 -2.8978
19 6 7.3785 -3.4743 -2.5848
20 6 7.7603 -4.5901 -1.9718
21 6 9.1318 -4.7363 -1.7831
22 6 9.8558 -3.7063 -2.2602
23 16 8.7911 -2.5071 -2.9813
24 6 11.3647 -3.6048 -2.1887
25 6 11.8767 -4.6161 -1.1586
26 6 11.2517 -5.9836 -1.4504
27 6 9.7626 -5.9432 -1.1016
28 1 -0.3633 -1.0157 0.1568
29 1 -0.3634 0.6436 0.8011
30 1 -0.3634 0.3720 -0.9580
31 1 3.0797 1.3444 -0.1082
32 1 1.5611 1.9273 -0.8309
33 1 2.9858 4.9182 0.7765
34 1 1.9567 -0.1526 -2.0377
35 1 1.3923 -1.6623 -1.2822
36 1 2.9803 -2.7961 0.2537
37 1 3.9591 -1.3344 -2.9406
38 1 3.3955 -2.8507 -2.1980
39 1 5.4592 -2.8602 -0.9137
40 1 5.9281 -2.4874 -3.7996
41 1 5.3652 -4.0035 -3.0559
42 1 7.0520 -5.3354 -1.6411
43 1 11.6494 -2.5975 -1.8848
44 1 11.7930 -3.8293 -3.1656
45 1 11.5940 -4.2919 -0.1572
46 1 12.9622 -4.6890 -1.2272
47 1 11.7460 -6.7455 -0.8477
48 1 11.3720 -6.2205 -2.5075
49 1 9.6419 -5.8574 -0.0217
50 1 9.2803 -6.8551 -1.4538
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000556882189.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:43:18
Heat of formation + Delta-G solvation = -31.911653 kcal
Electronic energy + Delta-G solvation = -26295.052831 eV
Core-core repulsion = 22640.771128 eV
Total energy + Delta-G solvation = -3654.281702 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 338.177 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-39.41755 -38.26801 -36.55300 -35.49991 -34.37891 -32.44759 -31.09927 -30.73622
-28.96891 -27.26755 -26.30881 -24.60448 -23.88836 -23.19351 -22.32277 -21.46566
-20.59201 -20.00675 -18.11581 -17.60794 -16.55098 -16.10970 -15.91194 -15.32120
-15.08167 -14.99431 -14.74525 -14.54953 -14.24019 -14.16071 -14.05291 -13.51730
-13.32239 -13.21602 -13.02491 -12.90508 -12.55376 -12.36150 -11.99232 -11.95021
-11.78523 -11.56997 -11.38958 -11.20649 -11.13495 -11.08746 -10.91505 -10.87223
-10.67304 -10.59342 -10.51338 -10.31811 -9.73278 -9.60646 -9.08647 -8.67572
-8.40206 -8.38001 -8.33534 -7.17156 -5.97394 -3.97762 0.86127 1.51904
1.95008 2.51190 3.35054 3.42281 3.47546 4.07026 4.37805 4.45131
4.48485 4.54600 4.70332 4.77424 4.88797 4.89844 4.95015 5.15138
5.16851 5.22728 5.28556 5.31773 5.37431 5.41896 5.42795 5.44138
5.56443 5.60335 5.60566 5.67391 5.73182 5.75205 5.80267 5.96283
6.04581 6.05426 6.14934 6.23260 6.33946 6.43329 6.55671 6.74437
6.89716 7.32072 7.35550 7.36317 7.84765 8.09236 8.15563 8.25358
8.60099 9.09649 9.65886 11.13748
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.014775 B = 0.002014 C = 0.001897
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1894.666803 B =13898.952105 C =14756.259362
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.038 3.962
2 N -0.531 5.531
3 C 0.192 3.808
4 C -0.503 4.503
5 H 0.063 0.937
6 C 0.053 3.947
7 N -0.899 5.899
8 Si 0.897 3.103
9 H -0.272 1.272
10 H -0.284 1.284
11 H -0.286 1.286
12 C 0.027 3.973
13 C 0.117 3.883
14 H 0.111 0.889
15 O -0.540 6.540
16 C 0.030 3.970
17 N -0.678 5.678
18 C 0.130 3.870
19 C -0.169 4.169
20 C -0.130 4.130
21 C -0.104 4.104
22 C -0.187 4.187
23 S 0.121 5.879
24 C -0.047 4.047
25 C -0.115 4.115
26 C -0.119 4.119
27 C -0.057 4.057
28 H 0.043 0.957
29 H 0.077 0.923
30 H 0.007 0.993
31 H 0.032 0.968
32 H -0.012 1.012
33 H 0.260 0.740
34 H 0.033 0.967
35 H 0.058 0.942
36 H 0.358 0.642
37 H 0.079 0.921
38 H 0.029 0.971
39 H 0.352 0.648
40 H 0.080 0.920
41 H 0.046 0.954
42 H 0.133 0.867
43 H 0.076 0.924
44 H 0.077 0.923
45 H 0.068 0.932
46 H 0.069 0.931
47 H 0.067 0.933
48 H 0.064 0.936
49 H 0.075 0.925
50 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.597 -21.878 -9.636 28.010
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.111 4.111
2 N -0.255 5.255
3 C 0.067 3.933
4 C -0.542 4.542
5 H 0.082 0.918
6 C -0.147 4.147
7 N -0.539 5.539
8 Si 0.725 3.275
9 H -0.197 1.197
10 H -0.210 1.210
11 H -0.212 1.212
12 C -0.103 4.103
13 C 0.057 3.943
14 H 0.129 0.871
15 O -0.342 6.342
16 C -0.100 4.100
17 N -0.310 5.310
18 C -0.001 4.001
19 C -0.287 4.287
20 C -0.161 4.161
21 C -0.116 4.116
22 C -0.305 4.305
23 S 0.389 5.611
24 C -0.086 4.086
25 C -0.154 4.154
26 C -0.157 4.157
27 C -0.096 4.096
28 H 0.062 0.938
29 H 0.096 0.904
30 H 0.026 0.974
31 H 0.050 0.950
32 H 0.006 0.994
33 H 0.070 0.930
34 H 0.051 0.949
35 H 0.076 0.924
36 H 0.203 0.797
37 H 0.097 0.903
38 H 0.047 0.953
39 H 0.171 0.829
40 H 0.099 0.901
41 H 0.064 0.936
42 H 0.150 0.850
43 H 0.095 0.905
44 H 0.095 0.905
45 H 0.087 0.913
46 H 0.088 0.912
47 H 0.085 0.915
48 H 0.083 0.917
49 H 0.094 0.906
50 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 15.656 -19.385 -9.989 26.845
hybrid contribution -1.641 -1.521 0.504 2.293
sum 14.015 -20.906 -9.485 26.897
Atomic orbital electron populations
1.22225 0.88943 0.99881 1.00040 1.62024 1.06440 1.17849 1.39160
1.19779 0.95568 0.81460 0.96507 1.21191 1.34530 0.96766 1.01714
0.91834 1.24992 0.95376 0.97412 0.96964 1.69967 1.38545 1.11351
1.34027 0.86450 0.78147 0.79222 0.83655 1.19679 1.20991 1.21212
1.22657 0.95854 0.98088 0.93734 1.21966 0.95234 0.93864 0.83240
0.87117 1.86713 1.73207 1.35792 1.38486 1.22703 0.88051 0.98926
1.00352 1.60371 1.18659 1.47093 1.04923 1.20339 0.88038 0.96541
0.95156 1.24055 0.98743 0.98510 1.07403 1.19888 0.95422 0.98528
1.02292 1.19491 0.92394 0.97127 1.02623 1.24814 0.99446 0.98556
1.07692 1.84272 0.95924 1.22802 1.58129 1.20279 0.88011 1.00282
1.00058 1.21577 0.99882 0.94747 0.99232 1.21547 0.95154 0.97198
1.01803 1.20522 0.94826 0.94523 0.99712 0.93835 0.90449 0.97440
0.95001 0.99419 0.93043 0.94898 0.92375 0.79715 0.90252 0.95266
0.82881 0.90124 0.93620 0.84966 0.90511 0.90500 0.91340 0.91237
0.91461 0.91724 0.90619 0.90857
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.74 9.37 60.06 0.56 1.31 16
2 N -0.53 -11.61 4.56 -244.37 -1.11 -12.72 16
3 C 0.19 5.11 4.55 -4.97 -0.02 5.09 16
4 C -0.50 -14.54 8.39 -34.44 -0.29 -14.83 16
5 H 0.06 1.83 7.17 -52.48 -0.38 1.45 16
6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16
7 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16
8 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16
9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16
10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16
11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
12 C 0.03 0.46 4.66 -3.83 -0.02 0.44 16
13 C 0.12 1.92 3.30 -26.73 -0.09 1.84 16
14 H 0.11 2.26 6.78 -51.93 -0.35 1.90 16
15 O -0.54 -8.99 12.55 -35.23 -0.44 -9.43 16
16 C 0.03 0.38 5.39 -3.82 -0.02 0.36 16
17 N -0.68 -8.68 6.49 -115.05 -0.75 -9.43 16
18 C 0.13 1.40 6.17 -4.98 -0.03 1.37 16
19 C -0.17 -1.90 6.00 -36.15 -0.22 -2.12 16
20 C -0.13 -1.36 9.86 -41.06 -0.41 -1.76 16
21 C -0.10 -1.05 5.78 -104.76 -0.60 -1.65 16
22 C -0.19 -1.92 6.35 -35.24 -0.22 -2.14 16
23 S 0.12 1.36 23.30 -107.50 -2.50 -1.14 16
24 C -0.05 -0.37 6.26 -27.45 -0.17 -0.54 16
25 C -0.12 -0.77 5.94 -26.56 -0.16 -0.92 16
26 C -0.12 -0.76 5.89 -26.65 -0.16 -0.92 16
27 C -0.06 -0.43 6.15 -27.10 -0.17 -0.59 16
28 H 0.04 0.73 8.14 -51.92 -0.42 0.30 16
29 H 0.08 1.65 6.66 -51.93 -0.35 1.31 16
30 H 0.01 0.14 8.13 -51.93 -0.42 -0.29 16
31 H 0.03 0.91 6.63 -51.93 -0.34 0.57 16
32 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16
33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16
34 H 0.03 0.58 8.00 -51.93 -0.42 0.17 16
35 H 0.06 0.86 7.94 -51.93 -0.41 0.44 16
36 H 0.36 4.46 9.05 45.56 0.41 4.87 16
37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16
38 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16
39 H 0.35 4.56 8.11 -39.29 -0.32 4.24 16
40 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16
41 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16
42 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16
43 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16
44 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16
45 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16
46 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16
47 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16
48 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16
49 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16
50 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
LS Contribution 409.28 15.07 6.17 6.17
Total: -1.00 -32.45 409.28 -13.08 -45.53
By element:
Atomic # 1 Polarization: 12.10 SS G_CDS: -8.05 Total: 4.05 kcal
Atomic # 6 Polarization: -11.53 SS G_CDS: -2.11 Total: -13.64 kcal
Atomic # 7 Polarization: -47.60 SS G_CDS: -1.12 Total: -48.73 kcal
Atomic # 8 Polarization: -8.99 SS G_CDS: -0.44 Total: -9.43 kcal
Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal
Atomic # 16 Polarization: 1.36 SS G_CDS: -2.50 Total: -1.14 kcal
Total LS contribution 6.17 Total: 6.17 kcal
Total: -32.45 -13.08 -45.53 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000556882189.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.619 kcal
(2) G-P(sol) polarization free energy of solvation -32.452 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.833 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.079 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.531 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.912 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds