Wall clock time and date at job start Tue Mar 31 2020 21:43:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46892 * 1
3 3 C 1.46906 * 111.00015 * 2 1
4 4 C 1.50696 * 109.47081 * 66.04466 * 3 2 1
5 5 H 1.08007 * 119.99952 * 359.97438 * 4 3 2
6 6 C 1.37876 * 119.99726 * 180.02562 * 4 3 2
7 7 N 1.31508 * 120.00049 * 359.97438 * 6 4 3
8 8 Si 1.86804 * 119.99640 * 179.97438 * 6 4 3
9 9 H 1.48492 * 109.47355 * 0.02562 * 8 6 4
10 10 H 1.48506 * 109.46935 * 120.00126 * 8 6 4
11 11 H 1.48500 * 109.47089 * 239.99514 * 8 6 4
12 12 C 1.46900 * 111.00727 * 236.04212 * 2 1 3
13 13 C 1.52993 * 109.47484 * 199.85321 * 12 2 1
14 14 H 1.09000 * 109.47254 * 300.45592 * 13 12 2
15 15 O 1.42892 * 109.47519 * 60.46507 * 13 12 2
16 16 C 1.53005 * 109.46788 * 180.46408 * 13 12 2
17 17 N 1.46904 * 109.46920 * 179.97438 * 16 13 12
18 18 C 1.46902 * 111.00009 * 179.97438 * 17 16 13
19 19 C 1.50699 * 109.46919 * 179.97438 * 18 17 16
20 20 C 1.32912 * 125.20822 * 90.00767 * 19 18 17
21 21 C 1.39207 * 115.70531 * 179.97438 * 20 19 18
22 22 C 1.34635 * 113.66589 * 0.02562 * 21 20 19
23 23 S 1.75732 * 125.20923 * 269.69563 * 19 18 17
24 24 C 1.51401 * 124.78555 * 179.97438 * 22 21 20
25 25 C 1.53167 * 108.70255 * 343.68176 * 24 22 21
26 26 C 1.53157 * 108.96528 * 49.66563 * 25 24 22
27 27 C 1.52274 * 123.50541 * 179.97438 * 21 20 19
28 28 H 1.09011 * 109.46964 * 188.77580 * 1 2 3
29 29 H 1.08995 * 109.47763 * 308.77752 * 1 2 3
30 30 H 1.09004 * 109.47279 * 68.78106 * 1 2 3
31 31 H 1.09001 * 109.46729 * 186.04452 * 3 2 1
32 32 H 1.08996 * 109.46621 * 306.04332 * 3 2 1
33 33 H 0.97002 * 120.00069 * 179.97438 * 7 6 4
34 34 H 1.09001 * 109.46732 * 79.84877 * 12 2 1
35 35 H 1.09003 * 109.46568 * 319.85719 * 12 2 1
36 36 H 0.96703 * 114.00182 * 59.99233 * 15 13 12
37 37 H 1.08992 * 109.47207 * 60.00010 * 16 13 12
38 38 H 1.09000 * 109.47010 * 299.99328 * 16 13 12
39 39 H 1.00903 * 111.00135 * 56.04559 * 17 16 13
40 40 H 1.09007 * 109.46869 * 60.00093 * 18 17 16
41 41 H 1.09000 * 109.47478 * 299.99950 * 18 17 16
42 42 H 1.08008 * 122.14488 * 359.96922 * 20 19 18
43 43 H 1.09000 * 109.60072 * 223.92130 * 24 22 21
44 44 H 1.09003 * 109.60089 * 103.44768 * 24 22 21
45 45 H 1.08998 * 109.55857 * 289.81617 * 25 24 22
46 46 H 1.09007 * 109.55802 * 169.50995 * 25 24 22
47 47 H 1.08996 * 109.49836 * 169.48878 * 26 25 24
48 48 H 1.09005 * 109.49653 * 49.38512 * 26 25 24
49 49 H 1.09003 * 109.58617 * 282.35669 * 27 21 20
50 50 H 1.09002 * 109.58279 * 42.76213 * 27 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.6368 2.0472 1.2984
5 1 1.0738 1.5115 2.0484
6 6 2.0267 3.3495 1.5284
7 7 2.7119 4.0019 0.6149
8 14 1.5816 4.1873 3.1376
9 1 0.8146 3.2447 3.9908
10 1 2.8231 4.5949 3.8433
11 1 0.7541 5.3883 2.8581
12 6 1.9955 -0.7660 -1.1375
13 6 3.4449 -1.1666 -0.8554
14 1 4.0464 -0.2706 -0.7026
15 8 3.4945 -1.9797 0.3186
16 6 3.9969 -1.9545 -2.0452
17 7 5.3888 -2.3387 -1.7746
18 6 5.9529 -3.0992 -2.8978
19 6 7.3785 -3.4743 -2.5848
20 6 7.7603 -4.5901 -1.9718
21 6 9.1318 -4.7363 -1.7831
22 6 9.8558 -3.7063 -2.2602
23 16 8.7911 -2.5071 -2.9813
24 6 11.3647 -3.6048 -2.1887
25 6 11.8767 -4.6161 -1.1586
26 6 11.2517 -5.9836 -1.4504
27 6 9.7626 -5.9432 -1.1016
28 1 -0.3633 -1.0157 0.1568
29 1 -0.3634 0.6436 0.8011
30 1 -0.3634 0.3720 -0.9580
31 1 3.0797 1.3444 -0.1082
32 1 1.5611 1.9273 -0.8309
33 1 2.9858 4.9182 0.7765
34 1 1.9567 -0.1526 -2.0377
35 1 1.3923 -1.6623 -1.2822
36 1 2.9803 -2.7961 0.2537
37 1 3.9591 -1.3344 -2.9406
38 1 3.3955 -2.8507 -2.1980
39 1 5.4592 -2.8602 -0.9137
40 1 5.9281 -2.4874 -3.7996
41 1 5.3652 -4.0035 -3.0559
42 1 7.0520 -5.3354 -1.6411
43 1 11.6494 -2.5975 -1.8848
44 1 11.7930 -3.8293 -3.1656
45 1 11.5940 -4.2919 -0.1572
46 1 12.9622 -4.6890 -1.2272
47 1 11.7460 -6.7455 -0.8477
48 1 11.3720 -6.2205 -2.5075
49 1 9.6419 -5.8574 -0.0217
50 1 9.2803 -6.8551 -1.4538
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000556882189.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:43:17
Heat of formation + Delta-G solvation = -54.803485 kcal
Electronic energy + Delta-G solvation = -26296.045495 eV
Core-core repulsion = 22640.771128 eV
Total energy + Delta-G solvation = -3655.274367 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 338.177 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-40.13440 -39.58102 -37.73122 -36.78191 -35.30062 -34.61070 -31.81821 -31.69714
-30.12884 -29.25333 -27.40806 -25.99064 -24.79963 -24.52446 -23.04767 -22.79464
-21.74153 -21.24887 -18.81773 -18.64803 -18.40364 -17.41546 -17.16551 -16.59562
-16.37148 -16.01183 -15.88338 -15.69580 -15.51077 -15.25508 -14.88791 -14.73309
-14.70949 -14.05555 -14.03806 -13.92125 -13.65185 -13.60122 -13.36517 -13.15573
-12.93811 -12.78296 -12.67572 -12.57083 -12.54895 -12.29092 -12.25401 -12.16347
-11.85186 -11.72177 -11.52966 -11.47045 -11.31448 -11.18622 -10.79235 -10.62133
-9.53815 -9.28469 -9.15986 -8.94777 -8.20807 -6.30335 0.05543 0.71292
1.14723 1.38823 1.40644 1.54000 1.73262 2.39870 2.98174 3.11860
3.46762 3.69666 3.70945 3.80872 3.97567 4.01744 4.03870 4.14779
4.21167 4.30323 4.33725 4.35837 4.47247 4.53651 4.55946 4.57022
4.62864 4.63933 4.77304 4.78251 4.80725 4.89255 4.93517 5.03934
5.08398 5.11902 5.13462 5.22909 5.24724 5.29481 5.30391 5.44866
5.52009 5.64580 5.70264 5.95684 6.07022 6.34853 6.37626 6.64932
6.86057 7.05719 7.38978 8.90645
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.014775 B = 0.002014 C = 0.001897
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1894.666803 B =13898.952105 C =14756.259362
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.039 3.961
2 N -0.542 5.542
3 C 0.210 3.790
4 C -0.521 4.521
5 H 0.062 0.938
6 C -0.003 4.003
7 N -0.935 5.935
8 Si 0.970 3.030
9 H -0.263 1.263
10 H -0.280 1.280
11 H -0.276 1.276
12 C 0.027 3.973
13 C 0.126 3.874
14 H 0.059 0.941
15 O -0.558 6.558
16 C 0.044 3.956
17 N -0.696 5.696
18 C 0.135 3.865
19 C -0.182 4.182
20 C -0.130 4.130
21 C -0.115 4.115
22 C -0.190 4.190
23 S 0.075 5.925
24 C -0.050 4.050
25 C -0.114 4.114
26 C -0.117 4.117
27 C -0.056 4.056
28 H 0.082 0.918
29 H 0.054 0.946
30 H 0.012 0.988
31 H 0.001 0.999
32 H -0.042 1.042
33 H 0.264 0.736
34 H 0.027 0.973
35 H 0.099 0.901
36 H 0.379 0.621
37 H 0.078 0.922
38 H 0.062 0.938
39 H 0.350 0.650
40 H 0.078 0.922
41 H 0.067 0.933
42 H 0.149 0.851
43 H 0.074 0.926
44 H 0.087 0.913
45 H 0.060 0.940
46 H 0.087 0.913
47 H 0.084 0.916
48 H 0.064 0.936
49 H 0.077 0.923
50 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.300 -24.344 -9.047 29.648
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 N -0.266 5.266
3 C 0.083 3.917
4 C -0.560 4.560
5 H 0.080 0.920
6 C -0.200 4.200
7 N -0.576 5.576
8 Si 0.794 3.206
9 H -0.187 1.187
10 H -0.205 1.205
11 H -0.202 1.202
12 C -0.102 4.102
13 C 0.066 3.934
14 H 0.077 0.923
15 O -0.363 6.363
16 C -0.085 4.085
17 N -0.329 5.329
18 C 0.005 3.995
19 C -0.299 4.299
20 C -0.161 4.161
21 C -0.127 4.127
22 C -0.307 4.307
23 S 0.343 5.657
24 C -0.089 4.089
25 C -0.152 4.152
26 C -0.155 4.155
27 C -0.096 4.096
28 H 0.101 0.899
29 H 0.073 0.927
30 H 0.030 0.970
31 H 0.019 0.981
32 H -0.024 1.024
33 H 0.072 0.928
34 H 0.046 0.954
35 H 0.117 0.883
36 H 0.227 0.773
37 H 0.096 0.904
38 H 0.080 0.920
39 H 0.169 0.831
40 H 0.096 0.904
41 H 0.085 0.915
42 H 0.166 0.834
43 H 0.093 0.907
44 H 0.105 0.895
45 H 0.079 0.921
46 H 0.106 0.894
47 H 0.103 0.897
48 H 0.083 0.917
49 H 0.096 0.904
50 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges 15.342 -21.887 -9.413 28.338
hybrid contribution -1.528 -0.829 0.305 1.765
sum 13.814 -22.716 -9.107 28.103
Atomic orbital electron populations
1.22250 0.87426 1.01783 0.99463 1.61930 1.07916 1.15012 1.41724
1.19368 0.93592 0.84016 0.94695 1.21514 1.34598 0.97398 1.02468
0.92004 1.25954 0.95095 0.98178 1.00789 1.70097 1.39488 1.11828
1.36199 0.85323 0.78055 0.78216 0.78959 1.18671 1.20538 1.20162
1.22780 0.96896 0.98715 0.91820 1.21663 0.94020 0.92925 0.84768
0.92271 1.86660 1.73934 1.36941 1.38793 1.22478 0.88459 0.99513
0.98081 1.60307 1.18861 1.48100 1.05611 1.20323 0.87979 0.97047
0.94132 1.24147 0.98622 0.98769 1.08378 1.20168 0.96085 0.98454
1.01412 1.19881 0.92412 0.97936 1.02476 1.25140 1.00430 0.97914
1.07240 1.84377 0.97505 1.24480 1.59346 1.20404 0.86601 1.00780
1.01138 1.21593 1.00990 0.94481 0.98182 1.21555 0.94368 0.97390
1.02160 1.20612 0.95630 0.93781 0.99530 0.89925 0.92727 0.96950
0.98106 1.02393 0.92750 0.95439 0.88310 0.77319 0.90364 0.92020
0.83052 0.90395 0.91498 0.83352 0.90699 0.89495 0.92149 0.89422
0.89708 0.91694 0.90428 0.89652
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.49 9.37 127.69 1.20 2.68 16
2 N -0.54 -23.74 4.56 -927.06 -4.22 -27.96 16
3 C 0.21 11.64 4.55 85.55 0.39 12.03 16
4 C -0.52 -30.86 8.39 25.60 0.21 -30.64 16
5 H 0.06 3.60 7.17 -2.91 -0.02 3.58 16
6 C 0.00 -0.15 5.46 84.66 0.46 0.31 16
7 N -0.94 -58.42 13.29 21.45 0.28 -58.13 16
8 Si 0.97 45.99 29.54 68.60 2.03 48.01 16
9 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16
10 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16
11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16
12 C 0.03 0.91 4.66 86.30 0.40 1.32 16
13 C 0.13 4.17 3.30 30.59 0.10 4.27 16
14 H 0.06 2.58 6.78 -2.39 -0.02 2.56 16
15 O -0.56 -18.13 12.55 -148.98 -1.87 -20.00 16
16 C 0.04 1.07 5.39 86.30 0.47 1.54 16
17 N -0.70 -17.48 6.49 -517.91 -3.36 -20.84 16
18 C 0.14 2.78 6.17 85.56 0.53 3.31 16
19 C -0.18 -4.02 6.00 24.51 0.15 -3.88 16
20 C -0.13 -2.58 9.86 21.33 0.21 -2.37 16
21 C -0.12 -2.20 5.78 -19.95 -0.12 -2.31 16
22 C -0.19 -3.84 6.35 25.08 0.16 -3.68 16
23 S 0.08 1.76 23.30 -56.49 -1.32 0.44 16
24 C -0.05 -0.76 6.26 30.13 0.19 -0.57 16
25 C -0.11 -1.33 5.94 30.70 0.18 -1.15 16
26 C -0.12 -1.24 5.89 30.65 0.18 -1.06 16
27 C -0.06 -0.75 6.15 30.35 0.19 -0.56 16
28 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16
29 H 0.05 2.31 6.66 -2.39 -0.02 2.30 16
30 H 0.01 0.45 8.13 -2.38 -0.02 0.43 16
31 H 0.00 0.05 6.63 -2.39 -0.02 0.04 16
32 H -0.04 -2.49 8.12 -2.39 -0.02 -2.51 16
33 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16
34 H 0.03 0.97 8.00 -2.39 -0.02 0.95 16
35 H 0.10 2.56 7.94 -2.39 -0.02 2.54 16
36 H 0.38 8.50 9.05 -74.06 -0.67 7.83 16
37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16
38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16
39 H 0.35 8.85 8.11 -89.69 -0.73 8.12 16
40 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16
41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16
42 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16
43 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16
44 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16
45 H 0.06 0.81 8.11 -2.39 -0.02 0.79 16
46 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16
47 H 0.08 0.62 8.14 -2.39 -0.02 0.61 16
48 H 0.06 0.70 8.10 -2.38 -0.02 0.68 16
49 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16
50 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16
Total: -1.00 -72.71 409.28 -4.03 -76.74
By element:
Atomic # 1 Polarization: 22.96 SS G_CDS: -0.47 Total: 22.50 kcal
Atomic # 6 Polarization: -25.65 SS G_CDS: 4.90 Total: -20.76 kcal
Atomic # 7 Polarization: -99.63 SS G_CDS: -7.30 Total: -106.93 kcal
Atomic # 8 Polarization: -18.13 SS G_CDS: -1.87 Total: -20.00 kcal
Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal
Atomic # 16 Polarization: 1.76 SS G_CDS: -1.32 Total: 0.44 kcal
Total: -72.71 -4.03 -76.74 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000556882189.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.935 kcal
(2) G-P(sol) polarization free energy of solvation -72.707 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.772 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.032 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.739 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.803 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds