Wall clock time and date at job start Tue Mar 31 2020 21:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81398 * 103.00182 * 2 1 4 4 C 1.52996 * 109.47461 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47289 * 180.02562 * 4 3 2 6 6 C 1.38284 * 119.92150 * 269.72402 * 5 4 3 7 7 C 1.38105 * 120.07594 * 180.28161 * 6 5 4 8 8 C 1.38919 * 119.92164 * 359.97438 * 7 6 5 9 9 N 1.39672 * 120.07014 * 179.97438 * 8 7 6 10 10 C 1.46497 * 120.00513 * 0.02562 * 9 8 7 11 11 C 1.52997 * 109.47441 * 180.02562 * 10 9 8 12 12 H 1.09009 * 109.46912 * 304.99801 * 11 10 9 13 13 O 1.42897 * 109.47396 * 64.99320 * 11 10 9 14 14 C 1.53000 * 109.47574 * 184.99944 * 11 10 9 15 15 N 1.46897 * 109.47480 * 178.50845 * 14 11 10 16 16 C 1.46900 * 111.00068 * 164.00976 * 15 14 11 17 17 C 1.46904 * 110.99768 * 287.96370 * 15 14 11 18 18 C 1.50700 * 109.47156 * 170.00154 * 17 15 14 19 19 H 1.08007 * 119.99799 * 359.97438 * 18 17 15 20 20 C 1.37872 * 120.00020 * 179.97438 * 18 17 15 21 21 N 1.31510 * 120.00371 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99758 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46972 * 90.00289 * 22 20 18 24 24 H 1.48500 * 109.47338 * 210.00074 * 22 20 18 25 25 H 1.48498 * 109.47550 * 330.00293 * 22 20 18 26 26 C 1.38908 * 119.84855 * 0.02562 * 8 7 6 27 27 C 1.38099 * 119.92800 * 0.02562 * 26 8 7 28 28 H 1.08997 * 109.47135 * 59.99888 * 1 2 3 29 29 H 1.08999 * 109.47245 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47150 * 299.99694 * 1 2 3 31 31 H 1.09007 * 109.47065 * 60.00087 * 3 2 1 32 32 H 1.08997 * 109.47564 * 300.00341 * 3 2 1 33 33 H 1.08998 * 109.47202 * 59.99938 * 4 3 2 34 34 H 1.09002 * 109.46879 * 300.00152 * 4 3 2 35 35 H 1.08001 * 119.96647 * 0.25302 * 6 5 4 36 36 H 1.07996 * 120.04397 * 179.97438 * 7 6 5 37 37 H 0.97006 * 119.99478 * 180.02562 * 9 8 7 38 38 H 1.09005 * 109.46773 * 300.00140 * 10 9 8 39 39 H 1.09002 * 109.47440 * 59.99697 * 10 9 8 40 40 H 0.96707 * 113.99826 * 60.00474 * 13 11 10 41 41 H 1.09004 * 109.47005 * 298.51031 * 14 11 10 42 42 H 1.09001 * 109.47104 * 58.50055 * 14 11 10 43 43 H 1.08998 * 109.46947 * 65.48325 * 16 15 14 44 44 H 1.08999 * 109.46865 * 185.48255 * 16 15 14 45 45 H 1.09006 * 109.47153 * 305.48336 * 16 15 14 46 46 H 1.09006 * 109.46866 * 289.99737 * 17 15 14 47 47 H 1.08999 * 109.47156 * 49.99474 * 17 15 14 48 48 H 0.96996 * 120.00122 * 179.97438 * 21 20 18 49 49 H 1.08002 * 120.03270 * 179.97438 * 26 8 7 50 50 H 1.07995 * 119.96319 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 6 4.0813 3.4083 0.0000 6 6 4.2415 4.0798 -1.1982 7 6 4.5579 5.4241 -1.2013 8 6 4.7147 6.1019 0.0011 9 7 5.0352 7.4613 0.0016 10 6 5.2059 8.1742 -1.2668 11 6 5.5512 9.6381 -0.9867 12 1 4.7880 10.0745 -0.3422 13 8 6.8220 9.7121 -0.3374 14 6 5.6068 10.4106 -2.3062 15 7 5.9031 11.8235 -2.0344 16 6 6.3360 12.5150 -3.2560 17 6 4.7460 12.4971 -1.4300 18 6 5.1578 13.8623 -0.9423 19 1 6.1773 14.1960 -1.0685 20 6 4.2332 14.6854 -0.3353 21 7 2.9920 14.2790 -0.1812 22 14 4.7439 16.3773 0.2698 23 1 4.5469 17.3714 -0.8157 24 1 3.9150 16.7545 1.4428 25 1 6.1756 16.3511 0.6632 26 6 4.5531 5.4242 1.2029 27 6 4.2377 4.0797 1.1987 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8032 2.2371 0.8901 32 1 1.8032 2.2372 -0.8899 33 1 4.1609 1.4704 -0.8908 34 1 4.1616 1.4702 0.8891 35 1 4.1195 3.5523 -2.1327 36 1 4.6833 5.9479 -2.1374 37 1 5.1448 7.9334 0.8419 38 1 6.0129 7.7135 -1.8367 39 1 4.2804 8.1221 -1.8403 40 1 7.5501 9.3412 -0.8547 41 1 6.3879 9.9910 -2.9402 42 1 4.6456 10.3320 -2.8141 43 1 5.5108 12.5464 -3.9675 44 1 6.6416 13.5317 -3.0090 45 1 7.1767 11.9801 -3.6979 46 1 3.9560 12.6001 -2.1740 47 1 4.3796 11.9066 -0.5903 48 1 2.3416 14.8579 0.2462 49 1 4.6747 5.9481 2.1394 50 1 4.1123 3.5522 2.1327 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564863569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:14 Heat of formation + Delta-G solvation = -30.924956 kcal Electronic energy + Delta-G solvation = -25868.100466 eV Core-core repulsion = 22213.861550 eV Total energy + Delta-G solvation = -3654.238916 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.74065 -38.22921 -36.19986 -35.27353 -33.23023 -32.52660 -31.04084 -30.26430 -29.38074 -28.18467 -27.32685 -25.87857 -23.89989 -23.51678 -22.81069 -21.55374 -20.76752 -20.11214 -17.45769 -16.76645 -16.62318 -16.41243 -15.86002 -15.64184 -15.45591 -14.90038 -14.72199 -14.58589 -14.27791 -14.15099 -13.86140 -13.83006 -13.58708 -13.47168 -13.36596 -13.32793 -13.05842 -12.78815 -12.50340 -12.03531 -11.94900 -11.63966 -11.48866 -11.28897 -11.23656 -11.01647 -10.94716 -10.76761 -10.70315 -10.40791 -10.35468 -10.00043 -9.82133 -9.73762 -9.19521 -9.00556 -8.45622 -8.07548 -7.38886 -7.28004 -6.05216 -4.05930 1.22522 1.36978 1.56623 2.21867 3.30372 3.36205 3.36866 3.41783 3.75834 4.39359 4.53832 4.56344 4.70670 4.72223 4.72465 4.75268 4.81963 4.83419 4.97080 5.14319 5.21509 5.24723 5.28225 5.29537 5.32089 5.34993 5.42224 5.55819 5.60168 5.66104 5.68315 5.79451 5.94292 5.95507 6.02916 6.25691 6.27819 6.32440 6.33687 6.59782 6.66753 6.78694 7.19778 7.25743 7.30973 7.70704 7.75993 7.96600 8.03737 8.14835 8.50518 9.01222 9.58248 11.05857 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019204 B = 0.001625 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.651742 B =17225.028885 C =17760.530650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.276 6.276 3 C -0.075 4.075 4 C -0.051 4.051 5 C -0.153 4.153 6 C -0.063 4.063 7 C -0.201 4.201 8 C 0.224 3.776 9 N -0.736 5.736 10 C 0.093 3.907 11 C 0.103 3.897 12 H 0.110 0.890 13 O -0.539 6.539 14 C 0.028 3.972 15 N -0.531 5.531 16 C 0.040 3.960 17 C 0.192 3.808 18 C -0.505 4.505 19 H 0.063 0.937 20 C 0.054 3.946 21 N -0.900 5.900 22 Si 0.898 3.102 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.273 1.273 26 C -0.197 4.197 27 C -0.063 4.063 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.406 0.594 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.365 0.635 41 H 0.063 0.937 42 H 0.033 0.967 43 H 0.011 0.989 44 H 0.074 0.926 45 H 0.043 0.957 46 H -0.011 1.011 47 H 0.030 0.970 48 H 0.261 0.739 49 H 0.120 0.880 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.384 -26.275 -1.885 26.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.050 6.050 3 C -0.223 4.223 4 C -0.090 4.090 5 C -0.157 4.157 6 C -0.082 4.082 7 C -0.224 4.224 8 C 0.119 3.881 9 N -0.364 5.364 10 C -0.032 4.032 11 C 0.043 3.957 12 H 0.127 0.873 13 O -0.342 6.342 14 C -0.102 4.102 15 N -0.255 5.255 16 C -0.109 4.109 17 C 0.067 3.933 18 C -0.544 4.544 19 H 0.081 0.919 20 C -0.147 4.147 21 N -0.540 5.540 22 Si 0.726 3.274 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.197 1.197 26 C -0.220 4.220 27 C -0.082 4.082 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.241 0.759 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.211 0.789 41 H 0.082 0.918 42 H 0.051 0.949 43 H 0.029 0.971 44 H 0.093 0.907 45 H 0.062 0.938 46 H 0.007 0.993 47 H 0.048 0.952 48 H 0.071 0.929 49 H 0.138 0.862 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.141 -26.681 -1.199 26.708 hybrid contribution -1.216 1.938 -0.457 2.333 sum -1.075 -24.743 -1.656 24.822 Atomic orbital electron populations 1.23358 0.94031 1.06433 1.05002 1.86881 1.07589 1.12442 1.98114 1.23497 1.00470 0.93100 1.05268 1.20117 0.92106 0.93142 1.03595 1.19354 1.08044 0.95012 0.93301 1.20733 0.96733 0.93557 0.97189 1.20626 1.10143 0.95123 0.96458 1.17911 0.92109 0.84178 0.93864 1.44692 1.76785 1.06431 1.08541 1.22100 1.01059 0.93548 0.86500 1.22144 0.87283 0.90833 0.95432 0.87275 1.86683 1.16421 1.84748 1.46355 1.22594 0.99471 0.92527 0.95573 1.62041 1.38915 0.99310 1.25238 1.22198 0.97692 1.00228 0.90737 1.19787 0.85724 0.94101 0.93680 1.21145 0.96317 0.99180 1.37739 0.91855 1.24985 0.94886 0.98693 0.96099 1.69948 1.02752 1.37097 1.44181 0.86493 0.78644 0.83974 0.78293 1.20774 1.21256 1.19733 1.20593 1.09853 0.95149 0.96376 1.20711 0.96797 0.93481 0.97211 0.90474 0.88167 0.90477 0.89964 0.89981 0.90564 0.90557 0.86446 0.86237 0.75852 0.92171 0.91572 0.78928 0.91836 0.94865 0.97062 0.90713 0.93804 0.99329 0.95159 0.92945 0.86183 0.86376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.76 101.05 1.09 0.42 16 2 S -0.28 -2.24 22.38 -107.50 -2.41 -4.65 16 3 C -0.08 -0.57 5.92 37.16 0.22 -0.35 16 4 C -0.05 -0.40 5.35 -27.89 -0.15 -0.55 16 5 C -0.15 -1.43 5.14 -104.59 -0.54 -1.97 16 6 C -0.06 -0.62 9.69 -39.61 -0.38 -1.00 16 7 C -0.20 -2.20 9.31 -39.38 -0.37 -2.56 16 8 C 0.22 2.64 6.65 -83.79 -0.56 2.08 16 9 N -0.74 -8.83 5.68 -58.63 -0.33 -9.16 16 10 C 0.09 1.10 4.55 -4.05 -0.02 1.08 16 11 C 0.10 1.54 3.02 -26.73 -0.08 1.46 16 12 H 0.11 1.98 6.56 -51.92 -0.34 1.64 16 13 O -0.54 -8.38 13.18 -35.23 -0.46 -8.84 16 14 C 0.03 0.46 4.63 -3.83 -0.02 0.44 16 15 N -0.53 -11.03 4.60 -244.36 -1.12 -12.16 16 16 C 0.04 0.75 9.32 60.06 0.56 1.31 16 17 C 0.19 4.91 4.57 -4.97 -0.02 4.89 16 18 C -0.51 -14.18 8.53 -34.44 -0.29 -14.47 16 19 H 0.06 1.77 7.10 -52.48 -0.37 1.40 16 20 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 21 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 22 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 26 C -0.20 -2.15 9.90 -39.38 -0.39 -2.54 16 27 C -0.06 -0.62 9.69 -39.62 -0.38 -1.00 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.10 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 31 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 34 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 35 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.12 1.21 6.73 -52.49 -0.35 0.86 16 37 H 0.41 4.99 8.49 -40.82 -0.35 4.65 16 38 H 0.06 0.63 7.95 -51.93 -0.41 0.21 16 39 H 0.07 0.77 7.95 -51.93 -0.41 0.36 16 40 H 0.36 4.30 9.05 45.56 0.41 4.72 16 41 H 0.06 0.86 7.88 -51.93 -0.41 0.45 16 42 H 0.03 0.54 8.05 -51.93 -0.42 0.13 16 43 H 0.01 0.20 8.13 -51.93 -0.42 -0.22 16 44 H 0.07 1.51 6.90 -51.93 -0.36 1.16 16 45 H 0.04 0.68 7.97 -51.93 -0.41 0.27 16 46 H -0.01 -0.30 8.11 -51.93 -0.42 -0.72 16 47 H 0.03 0.82 6.38 -51.93 -0.33 0.49 16 48 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 49 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 50 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 419.07 15.07 6.32 6.32 Total: -1.00 -31.37 419.07 -11.69 -43.06 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -7.96 Total: 5.98 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -1.43 Total: -11.32 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: -0.72 Total: -47.20 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.46 Total: -8.84 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -2.24 SS G_CDS: -2.41 Total: -4.65 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -31.37 -11.69 -43.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564863569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.131 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds