Wall clock time and date at job start Tue Mar 31 2020 21:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81398 * 103.00182 * 2 1 4 4 C 1.52996 * 109.47461 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47289 * 180.02562 * 4 3 2 6 6 C 1.38284 * 119.92150 * 269.72402 * 5 4 3 7 7 C 1.38105 * 120.07594 * 180.28161 * 6 5 4 8 8 C 1.38919 * 119.92164 * 359.97438 * 7 6 5 9 9 N 1.39672 * 120.07014 * 179.97438 * 8 7 6 10 10 C 1.46497 * 120.00513 * 0.02562 * 9 8 7 11 11 C 1.52997 * 109.47441 * 180.02562 * 10 9 8 12 12 H 1.09009 * 109.46912 * 304.99801 * 11 10 9 13 13 O 1.42897 * 109.47396 * 64.99320 * 11 10 9 14 14 C 1.53000 * 109.47574 * 184.99944 * 11 10 9 15 15 N 1.46897 * 109.47480 * 178.50845 * 14 11 10 16 16 C 1.46900 * 111.00068 * 164.00976 * 15 14 11 17 17 C 1.46904 * 110.99768 * 287.96370 * 15 14 11 18 18 C 1.50700 * 109.47156 * 170.00154 * 17 15 14 19 19 H 1.08007 * 119.99799 * 359.97438 * 18 17 15 20 20 C 1.37872 * 120.00020 * 179.97438 * 18 17 15 21 21 N 1.31510 * 120.00371 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99758 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46972 * 90.00289 * 22 20 18 24 24 H 1.48500 * 109.47338 * 210.00074 * 22 20 18 25 25 H 1.48498 * 109.47550 * 330.00293 * 22 20 18 26 26 C 1.38908 * 119.84855 * 0.02562 * 8 7 6 27 27 C 1.38099 * 119.92800 * 0.02562 * 26 8 7 28 28 H 1.08997 * 109.47135 * 59.99888 * 1 2 3 29 29 H 1.08999 * 109.47245 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47150 * 299.99694 * 1 2 3 31 31 H 1.09007 * 109.47065 * 60.00087 * 3 2 1 32 32 H 1.08997 * 109.47564 * 300.00341 * 3 2 1 33 33 H 1.08998 * 109.47202 * 59.99938 * 4 3 2 34 34 H 1.09002 * 109.46879 * 300.00152 * 4 3 2 35 35 H 1.08001 * 119.96647 * 0.25302 * 6 5 4 36 36 H 1.07996 * 120.04397 * 179.97438 * 7 6 5 37 37 H 0.97006 * 119.99478 * 180.02562 * 9 8 7 38 38 H 1.09005 * 109.46773 * 300.00140 * 10 9 8 39 39 H 1.09002 * 109.47440 * 59.99697 * 10 9 8 40 40 H 0.96707 * 113.99826 * 60.00474 * 13 11 10 41 41 H 1.09004 * 109.47005 * 298.51031 * 14 11 10 42 42 H 1.09001 * 109.47104 * 58.50055 * 14 11 10 43 43 H 1.08998 * 109.46947 * 65.48325 * 16 15 14 44 44 H 1.08999 * 109.46865 * 185.48255 * 16 15 14 45 45 H 1.09006 * 109.47153 * 305.48336 * 16 15 14 46 46 H 1.09006 * 109.46866 * 289.99737 * 17 15 14 47 47 H 1.08999 * 109.47156 * 49.99474 * 17 15 14 48 48 H 0.96996 * 120.00122 * 179.97438 * 21 20 18 49 49 H 1.08002 * 120.03270 * 179.97438 * 26 8 7 50 50 H 1.07995 * 119.96319 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 6 4.0813 3.4083 0.0000 6 6 4.2415 4.0798 -1.1982 7 6 4.5579 5.4241 -1.2013 8 6 4.7147 6.1019 0.0011 9 7 5.0352 7.4613 0.0016 10 6 5.2059 8.1742 -1.2668 11 6 5.5512 9.6381 -0.9867 12 1 4.7880 10.0745 -0.3422 13 8 6.8220 9.7121 -0.3374 14 6 5.6068 10.4106 -2.3062 15 7 5.9031 11.8235 -2.0344 16 6 6.3360 12.5150 -3.2560 17 6 4.7460 12.4971 -1.4300 18 6 5.1578 13.8623 -0.9423 19 1 6.1773 14.1960 -1.0685 20 6 4.2332 14.6854 -0.3353 21 7 2.9920 14.2790 -0.1812 22 14 4.7439 16.3773 0.2698 23 1 4.5469 17.3714 -0.8157 24 1 3.9150 16.7545 1.4428 25 1 6.1756 16.3511 0.6632 26 6 4.5531 5.4242 1.2029 27 6 4.2377 4.0797 1.1987 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8032 2.2371 0.8901 32 1 1.8032 2.2372 -0.8899 33 1 4.1609 1.4704 -0.8908 34 1 4.1616 1.4702 0.8891 35 1 4.1195 3.5523 -2.1327 36 1 4.6833 5.9479 -2.1374 37 1 5.1448 7.9334 0.8419 38 1 6.0129 7.7135 -1.8367 39 1 4.2804 8.1221 -1.8403 40 1 7.5501 9.3412 -0.8547 41 1 6.3879 9.9910 -2.9402 42 1 4.6456 10.3320 -2.8141 43 1 5.5108 12.5464 -3.9675 44 1 6.6416 13.5317 -3.0090 45 1 7.1767 11.9801 -3.6979 46 1 3.9560 12.6001 -2.1740 47 1 4.3796 11.9066 -0.5903 48 1 2.3416 14.8579 0.2462 49 1 4.6747 5.9481 2.1394 50 1 4.1123 3.5522 2.1327 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564863569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:13 Heat of formation + Delta-G solvation = -51.562062 kcal Electronic energy + Delta-G solvation = -25868.995358 eV Core-core repulsion = 22213.861550 eV Total energy + Delta-G solvation = -3655.133808 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.57058 -39.47181 -37.48321 -36.40562 -34.62480 -34.01858 -31.84032 -31.37179 -29.87263 -29.47695 -28.92046 -27.05861 -25.49915 -24.29162 -23.96655 -22.65455 -21.79946 -21.44782 -18.63698 -18.32723 -17.69156 -17.24283 -17.10282 -16.61152 -16.55788 -16.22864 -16.06351 -15.50157 -15.42154 -15.25632 -14.87859 -14.72327 -14.58816 -14.42967 -14.23630 -14.07989 -13.98312 -13.95698 -13.65794 -13.47350 -13.13246 -12.92654 -12.77883 -12.62438 -12.57511 -12.35660 -12.28681 -12.20831 -11.95028 -11.68851 -11.52468 -11.33622 -10.93637 -10.88834 -10.80276 -10.61988 -9.79169 -8.97463 -8.69209 -8.23781 -8.22114 -6.31334 0.57676 0.58283 0.87040 1.38999 1.40678 1.52300 1.67999 2.38013 2.43284 2.96946 3.10497 3.24794 3.60088 3.84327 3.90992 4.04129 4.08251 4.12067 4.13396 4.21410 4.25759 4.32238 4.35621 4.41876 4.56385 4.56646 4.58884 4.60339 4.61783 4.68281 4.77192 4.87836 4.89672 4.96515 5.05023 5.09206 5.13301 5.20086 5.20473 5.29725 5.45855 5.54117 5.63558 5.83965 6.00814 6.05152 6.32043 6.44117 6.63168 6.77746 6.84667 6.98830 7.38231 8.88872 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019204 B = 0.001625 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.651742 B =17225.028885 C =17760.530650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.315 6.315 3 C -0.065 4.065 4 C -0.046 4.046 5 C -0.150 4.150 6 C -0.067 4.067 7 C -0.210 4.210 8 C 0.206 3.794 9 N -0.743 5.743 10 C 0.109 3.891 11 C 0.114 3.886 12 H 0.068 0.932 13 O -0.557 6.557 14 C 0.028 3.972 15 N -0.542 5.542 16 C 0.041 3.959 17 C 0.209 3.791 18 C -0.523 4.523 19 H 0.061 0.939 20 C 0.000 4.000 21 N -0.935 5.935 22 Si 0.968 3.032 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.266 1.266 26 C -0.210 4.210 27 C -0.068 4.068 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.136 0.864 36 H 0.127 0.873 37 H 0.401 0.599 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.383 0.617 41 H 0.102 0.898 42 H 0.031 0.969 43 H 0.009 0.991 44 H 0.053 0.947 45 H 0.084 0.916 46 H -0.041 1.041 47 H 0.006 0.994 48 H 0.264 0.736 49 H 0.122 0.878 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.433 -27.368 -2.573 27.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.089 6.089 3 C -0.213 4.213 4 C -0.084 4.084 5 C -0.154 4.154 6 C -0.086 4.086 7 C -0.233 4.233 8 C 0.102 3.898 9 N -0.372 5.372 10 C -0.017 4.017 11 C 0.054 3.946 12 H 0.086 0.914 13 O -0.363 6.363 14 C -0.102 4.102 15 N -0.265 5.265 16 C -0.107 4.107 17 C 0.082 3.918 18 C -0.562 4.562 19 H 0.079 0.921 20 C -0.197 4.197 21 N -0.575 5.575 22 Si 0.792 3.208 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.191 1.191 26 C -0.232 4.232 27 C -0.086 4.086 28 H 0.102 0.898 29 H 0.129 0.871 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.154 0.846 36 H 0.145 0.855 37 H 0.236 0.764 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.231 0.769 41 H 0.121 0.879 42 H 0.049 0.951 43 H 0.027 0.973 44 H 0.072 0.928 45 H 0.103 0.897 46 H -0.023 1.023 47 H 0.024 0.976 48 H 0.072 0.928 49 H 0.140 0.860 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.978 -27.803 -1.912 27.886 hybrid contribution -1.476 2.162 -0.256 2.630 sum -0.498 -25.641 -2.168 25.738 Atomic orbital electron populations 1.23411 0.91552 1.07369 1.05659 1.86995 1.10451 1.13273 1.98197 1.23402 1.00174 0.92447 1.05300 1.20081 0.92367 0.92014 1.03932 1.19557 1.07049 0.95738 0.93087 1.20987 0.96148 0.93280 0.98170 1.20806 1.10321 0.95726 0.96426 1.18095 0.93115 0.84009 0.94583 1.44669 1.77522 1.06718 1.08265 1.21906 1.01812 0.91264 0.86677 1.21856 0.86354 0.92573 0.93830 0.91390 1.86640 1.17149 1.85246 1.47283 1.22734 1.00720 0.89912 0.96792 1.61928 1.36537 1.01461 1.26623 1.22222 0.98916 0.99692 0.89880 1.19396 0.86592 0.93467 0.92312 1.21493 0.96269 1.00501 1.37900 0.92101 1.25899 0.94821 1.02843 0.96168 1.70074 1.03866 1.38659 1.44936 0.85405 0.78414 0.79021 0.77923 1.19666 1.20797 1.19077 1.20766 1.10254 0.95821 0.96407 1.20947 0.96318 0.93148 0.98228 0.89795 0.87120 0.89835 0.89950 0.89869 0.90186 0.90308 0.84631 0.85548 0.76439 0.89896 0.91489 0.76865 0.87943 0.95082 0.97279 0.92767 0.89721 1.02343 0.97636 0.92757 0.85978 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.76 113.37 1.22 0.15 16 2 S -0.31 -4.74 22.38 -56.49 -1.26 -6.01 16 3 C -0.07 -0.89 5.92 71.98 0.43 -0.46 16 4 C -0.05 -0.64 5.35 29.85 0.16 -0.48 16 5 C -0.15 -2.59 5.14 -19.84 -0.10 -2.69 16 6 C -0.07 -1.20 9.69 22.25 0.22 -0.98 16 7 C -0.21 -4.33 9.31 22.40 0.21 -4.12 16 8 C 0.21 4.73 6.65 38.22 0.25 4.98 16 9 N -0.74 -17.76 5.68 -339.42 -1.93 -19.69 16 10 C 0.11 2.46 4.55 86.38 0.39 2.85 16 11 C 0.11 3.42 3.02 30.59 0.09 3.51 16 12 H 0.07 2.62 6.56 -2.38 -0.02 2.60 16 13 O -0.56 -17.02 13.18 -148.98 -1.96 -18.98 16 14 C 0.03 0.86 4.63 86.30 0.40 1.26 16 15 N -0.54 -22.49 4.60 -927.03 -4.27 -26.76 16 16 C 0.04 1.50 9.32 127.69 1.19 2.69 16 17 C 0.21 11.07 4.57 85.56 0.39 11.46 16 18 C -0.52 -30.02 8.53 25.60 0.22 -29.80 16 19 H 0.06 3.44 7.10 -2.91 -0.02 3.42 16 20 C 0.00 0.03 5.46 84.65 0.46 0.49 16 21 N -0.93 -56.67 13.29 21.44 0.28 -56.38 16 22 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 26 C -0.21 -4.50 9.90 22.40 0.22 -4.28 16 27 C -0.07 -1.25 9.69 22.25 0.22 -1.03 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.08 8.08 -2.39 -0.02 1.06 16 34 H 0.08 1.08 8.08 -2.39 -0.02 1.06 16 35 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.13 2.34 6.73 -2.91 -0.02 2.32 16 37 H 0.40 10.18 8.49 -92.70 -0.79 9.40 16 38 H 0.08 1.52 7.95 -2.38 -0.02 1.50 16 39 H 0.07 1.51 7.95 -2.39 -0.02 1.49 16 40 H 0.38 8.31 9.05 -74.05 -0.67 7.64 16 41 H 0.10 2.42 7.88 -2.38 -0.02 2.41 16 42 H 0.03 1.00 8.05 -2.39 -0.02 0.98 16 43 H 0.01 0.32 8.13 -2.39 -0.02 0.30 16 44 H 0.05 2.18 6.90 -2.39 -0.02 2.16 16 45 H 0.08 2.39 7.97 -2.38 -0.02 2.37 16 46 H -0.04 -2.37 8.11 -2.38 -0.02 -2.39 16 47 H 0.01 0.32 6.38 -2.39 -0.02 0.31 16 48 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 49 H 0.12 2.46 8.06 -2.91 -0.02 2.44 16 50 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -68.97 419.07 -1.68 -70.65 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: -0.53 Total: 26.78 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 5.97 Total: -16.45 kcal Atomic # 7 Polarization: -96.92 SS G_CDS: -5.91 Total: -102.83 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -1.96 Total: -18.98 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: -4.74 SS G_CDS: -1.26 Total: -6.01 kcal Total: -68.97 -1.68 -70.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564863569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.085 kcal (2) G-P(sol) polarization free energy of solvation -68.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds