Wall clock time and date at job start Tue Mar 31 2020 20:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47412 * 2 1 4 4 C 1.52999 * 109.47222 * 239.99613 * 2 1 3 5 5 N 1.46903 * 109.47247 * 180.02562 * 4 2 1 6 6 C 1.46892 * 110.99934 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47003 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47094 * 305.00086 * 7 6 5 9 9 O 1.42904 * 109.46963 * 65.00279 * 7 6 5 10 10 C 1.53001 * 109.47078 * 185.00041 * 7 6 5 11 11 N 1.46904 * 109.47206 * 180.02562 * 10 7 6 12 12 C 1.46902 * 110.99382 * 293.95164 * 11 10 7 13 13 C 1.46896 * 111.00122 * 170.00267 * 11 10 7 14 14 C 1.50705 * 109.46900 * 189.99791 * 13 11 10 15 15 H 1.07994 * 119.99841 * 359.97438 * 14 13 11 16 16 C 1.37882 * 119.99676 * 179.97438 * 14 13 11 17 17 N 1.31508 * 120.00089 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99576 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46734 * 90.00159 * 18 16 14 20 20 H 1.48497 * 109.47098 * 209.99599 * 18 16 14 21 21 H 1.48498 * 109.47386 * 330.00145 * 18 16 14 22 22 S 1.81398 * 109.46809 * 119.99485 * 2 1 3 23 23 C 1.76200 * 103.00440 * 289.98502 * 22 2 1 24 24 C 1.38971 * 120.07420 * 353.32366 * 23 22 2 25 25 C 1.38089 * 119.91563 * 179.76581 * 24 23 22 26 26 C 1.38301 * 120.07982 * 0.48357 * 25 24 23 27 27 C 1.38305 * 120.15774 * 359.77130 * 26 25 24 28 28 C 1.38080 * 120.08292 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.46963 * 55.01063 * 1 2 3 30 30 H 1.08998 * 109.47317 * 295.01383 * 1 2 3 31 31 H 1.09003 * 109.47519 * 175.01071 * 1 2 3 32 32 H 1.09003 * 109.46970 * 300.00116 * 4 2 1 33 33 H 1.08997 * 109.47382 * 60.00177 * 4 2 1 34 34 H 1.00903 * 110.99781 * 56.04325 * 5 4 2 35 35 H 1.09001 * 109.47407 * 299.99886 * 6 5 4 36 36 H 1.09004 * 109.47665 * 60.00030 * 6 5 4 37 37 H 0.96693 * 113.99996 * 59.99854 * 9 7 6 38 38 H 1.09006 * 109.47283 * 299.99507 * 10 7 6 39 39 H 1.09000 * 109.47440 * 59.99979 * 10 7 6 40 40 H 1.09000 * 109.47465 * 60.00513 * 12 11 10 41 41 H 1.09001 * 109.46819 * 179.97438 * 12 11 10 42 42 H 1.09002 * 109.47255 * 299.99797 * 12 11 10 43 43 H 1.09002 * 109.47034 * 309.98900 * 13 11 10 44 44 H 1.08999 * 109.47421 * 69.99606 * 13 11 10 45 45 H 0.97003 * 119.99988 * 180.02562 * 17 16 14 46 46 H 1.08001 * 120.04591 * 359.97438 * 24 23 22 47 47 H 1.07994 * 119.96126 * 180.23203 * 25 24 23 48 48 H 1.07999 * 119.92264 * 179.74582 * 26 25 24 49 49 H 1.08008 * 119.95697 * 179.97438 * 27 26 25 50 50 H 1.07998 * 120.03882 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5090 -0.7219 -1.2489 6 6 4.0354 -1.4071 -2.4368 7 6 5.5649 -1.3867 -2.4014 8 1 5.9123 -0.3583 -2.3032 9 8 6.0258 -2.1537 -1.2872 10 6 6.1130 -1.9888 -3.6967 11 7 7.5816 -1.9698 -3.6626 12 6 8.0905 -0.5918 -3.6749 13 6 8.1441 -2.7487 -4.7737 14 6 9.6285 -2.9130 -4.5711 15 1 10.1060 -2.4815 -3.7039 16 6 10.3766 -3.6141 -5.4929 17 7 9.7951 -4.1390 -6.5492 18 14 12.2165 -3.8171 -5.2421 19 1 12.4762 -5.0533 -4.4613 20 1 12.8882 -3.9157 -6.5628 21 1 12.7478 -2.6439 -4.5028 22 16 2.1345 -0.8550 1.4812 23 6 1.7135 0.2577 2.7809 24 6 1.1964 1.5128 2.4830 25 6 0.8630 2.3804 3.5043 26 6 1.0524 2.0054 4.8220 27 6 1.5717 0.7591 5.1219 28 6 1.9025 -0.1157 4.1061 29 1 -0.3633 0.5893 -0.8419 30 1 -0.3634 0.4345 0.9312 31 1 -0.3634 -1.0238 -0.0894 32 1 1.6766 -1.7490 -1.2491 33 1 1.6767 -0.2076 -2.1392 34 1 3.8703 -1.1357 -0.4025 35 1 3.6856 -2.4394 -2.4456 36 1 3.6863 -0.8975 -3.3349 37 1 5.7532 -3.0812 -1.3085 38 1 5.7656 -3.0173 -3.7949 39 1 5.7614 -1.4038 -4.5466 40 1 7.7137 -0.0575 -2.8028 41 1 9.1801 -0.6067 -3.6485 42 1 7.7555 -0.0888 -4.5820 43 1 7.6711 -3.7302 -4.8055 44 1 7.9612 -2.2265 -5.7128 45 1 10.3214 -4.6326 -7.1975 46 1 1.0524 1.8080 1.4542 47 1 0.4577 3.3544 3.2738 48 1 0.7946 2.6875 5.6186 49 1 1.7187 0.4698 6.1521 50 1 2.3083 -1.0885 4.3411 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570391441.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:20 Heat of formation + Delta-G solvation = -24.552074 kcal Electronic energy + Delta-G solvation = -26036.849374 eV Core-core repulsion = 22382.886807 eV Total energy + Delta-G solvation = -3653.962567 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.27125 -38.42475 -36.72017 -35.37105 -33.37021 -32.49146 -31.31408 -31.23734 -29.69367 -27.23829 -26.55034 -24.86889 -23.41015 -23.03838 -23.01479 -21.86957 -21.12621 -20.12392 -18.15926 -17.14800 -16.60188 -16.34781 -15.96497 -15.69359 -15.47670 -15.16840 -14.84374 -14.65997 -14.41192 -14.15325 -14.01728 -13.77095 -13.47722 -13.38426 -13.26898 -12.91927 -12.68326 -12.45282 -12.22409 -12.12989 -11.87445 -11.62142 -11.61188 -11.31850 -11.22412 -11.08989 -10.86152 -10.71907 -10.61756 -10.34462 -10.24612 -10.08348 -9.97609 -9.59141 -9.34576 -9.09841 -8.61498 -8.41298 -7.67685 -7.16360 -6.00694 -4.01424 0.85221 0.99841 1.17716 2.06708 3.34544 3.35230 3.40039 3.44484 3.77346 4.36189 4.43367 4.46218 4.53731 4.58014 4.70192 4.72620 4.77740 4.92777 5.02244 5.12133 5.14219 5.18099 5.22575 5.30725 5.34916 5.36046 5.38721 5.45893 5.53310 5.60533 5.66294 5.69300 5.77087 5.90826 6.00930 6.09417 6.13283 6.24674 6.35499 6.43979 6.52876 6.77423 6.82094 7.25128 7.29789 7.35507 7.82941 8.00513 8.13228 8.23765 8.58410 9.06800 9.62686 11.10275 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021920 B = 0.001747 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.087360 B =16024.750917 C =16710.622985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.077 4.077 3 H 0.103 0.897 4 C 0.078 3.922 5 N -0.686 5.686 6 C 0.027 3.973 7 C 0.114 3.886 8 H 0.103 0.897 9 O -0.544 6.544 10 C 0.025 3.975 11 N -0.529 5.529 12 C 0.037 3.963 13 C 0.192 3.808 14 C -0.504 4.504 15 H 0.064 0.936 16 C 0.053 3.947 17 N -0.901 5.901 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.288 1.288 21 H -0.273 1.273 22 S -0.110 6.110 23 C -0.077 4.077 24 C -0.134 4.134 25 C -0.102 4.102 26 C -0.129 4.129 27 C -0.102 4.102 28 C -0.102 4.102 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.088 0.912 34 H 0.356 0.644 35 H 0.033 0.967 36 H 0.078 0.922 37 H 0.367 0.633 38 H 0.068 0.932 39 H 0.029 0.971 40 H 0.048 0.952 41 H 0.074 0.926 42 H 0.008 0.992 43 H 0.028 0.972 44 H -0.011 1.011 45 H 0.260 0.740 46 H 0.126 0.874 47 H 0.124 0.876 48 H 0.123 0.877 49 H 0.127 0.873 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.072 10.925 18.467 32.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.206 4.206 3 H 0.121 0.879 4 C -0.053 4.053 5 N -0.320 5.320 6 C -0.103 4.103 7 C 0.054 3.946 8 H 0.121 0.879 9 O -0.348 6.348 10 C -0.105 4.105 11 N -0.253 5.253 12 C -0.112 4.112 13 C 0.067 3.933 14 C -0.543 4.543 15 H 0.082 0.918 16 C -0.147 4.147 17 N -0.541 5.541 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.214 1.214 21 H -0.198 1.198 22 S 0.135 5.865 23 C -0.190 4.190 24 C -0.158 4.158 25 C -0.121 4.121 26 C -0.149 4.149 27 C -0.122 4.122 28 C -0.126 4.126 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.106 0.894 34 H 0.177 0.823 35 H 0.051 0.949 36 H 0.097 0.903 37 H 0.213 0.787 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.026 0.974 43 H 0.046 0.954 44 H 0.007 0.993 45 H 0.070 0.930 46 H 0.144 0.856 47 H 0.142 0.858 48 H 0.141 0.859 49 H 0.144 0.856 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -22.970 10.661 18.538 31.384 hybrid contribution -0.376 0.022 -0.878 0.956 sum -23.346 10.683 17.660 31.161 Atomic orbital electron populations 1.22142 0.92497 1.03521 1.02893 1.23523 0.98926 1.03380 0.94772 0.87896 1.21765 0.89204 0.98663 0.95688 1.60464 1.05616 1.59683 1.06262 1.22703 0.97023 0.96674 0.93860 1.21968 0.89561 0.96627 0.86444 0.87903 1.86610 1.78797 1.24638 1.44761 1.22704 0.91725 1.00399 0.95645 1.62018 1.02948 1.12252 1.48066 1.22250 1.01886 0.89349 0.97713 1.19748 0.95293 0.92328 0.85932 1.21181 0.92270 1.33412 1.07449 0.91763 1.24999 0.98854 0.95750 0.95144 1.69960 1.35932 1.36342 1.11820 0.86481 0.84994 0.78599 0.77238 1.20634 1.21381 1.19831 1.85533 1.75036 1.27934 0.97952 1.21762 1.02773 0.97366 0.97057 1.21253 1.01499 0.93161 0.99918 1.21072 0.99176 0.99200 0.92702 1.21186 1.00418 0.96771 0.96558 1.21106 0.98216 0.93840 0.99007 1.20809 1.00918 1.00256 0.90608 0.91259 0.91597 0.91241 0.94319 0.89376 0.82275 0.94855 0.90311 0.78694 0.91368 0.95339 0.93341 0.90736 0.97378 0.95431 0.99317 0.92995 0.85608 0.85803 0.85891 0.85551 0.85471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.73 37.16 0.32 -0.63 16 2 C -0.08 -0.61 2.29 -26.73 -0.06 -0.67 16 3 H 0.10 0.86 6.81 -51.92 -0.35 0.51 16 4 C 0.08 0.67 5.20 -3.82 -0.02 0.65 16 5 N -0.69 -7.55 6.49 -113.78 -0.74 -8.29 16 6 C 0.03 0.32 5.36 -3.83 -0.02 0.30 16 7 C 0.11 1.67 3.08 -26.73 -0.08 1.58 16 8 H 0.10 1.63 6.55 -51.93 -0.34 1.29 16 9 O -0.54 -8.54 12.72 -35.23 -0.45 -8.98 16 10 C 0.03 0.44 4.62 -3.82 -0.02 0.42 16 11 N -0.53 -11.63 4.62 -244.36 -1.13 -12.76 16 12 C 0.04 0.74 9.14 60.07 0.55 1.29 16 13 C 0.19 5.09 4.72 -4.98 -0.02 5.06 16 14 C -0.50 -14.46 8.46 -34.44 -0.29 -14.75 16 15 H 0.06 1.84 7.12 -52.49 -0.37 1.47 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 18 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 S -0.11 -1.05 19.94 -107.50 -2.14 -3.20 16 23 C -0.08 -0.73 5.97 -39.04 -0.23 -0.96 16 24 C -0.13 -1.13 8.04 -39.36 -0.32 -1.45 16 25 C -0.10 -0.75 10.04 -39.61 -0.40 -1.14 16 26 C -0.13 -0.90 10.04 -39.53 -0.40 -1.29 16 27 C -0.10 -0.75 10.04 -39.61 -0.40 -1.15 16 28 C -0.10 -0.90 9.79 -39.37 -0.39 -1.29 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.43 6.15 -51.93 -0.32 0.11 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.36 4.25 6.90 -39.29 -0.27 3.98 16 35 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.37 4.74 9.04 45.56 0.41 5.16 16 38 H 0.07 1.17 7.93 -51.93 -0.41 0.76 16 39 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 40 H 0.05 0.87 6.47 -51.93 -0.34 0.54 16 41 H 0.07 1.63 6.76 -51.93 -0.35 1.28 16 42 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 44 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.13 0.93 5.03 -52.49 -0.26 0.66 16 47 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 48 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 49 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 50 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 409.38 15.07 6.17 6.17 Total: -1.00 -32.05 409.38 -12.09 -44.14 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.65 Total: 4.82 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -1.87 Total: -12.59 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -1.13 Total: -47.35 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.45 Total: -8.98 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: -1.05 SS G_CDS: -2.14 Total: -3.20 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.05 -12.09 -44.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570391441.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.589 kcal (2) G-P(sol) polarization free energy of solvation -32.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds