Wall clock time and date at job start Tue Mar 31 2020 20:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47412 * 2 1 4 4 C 1.52999 * 109.47222 * 239.99613 * 2 1 3 5 5 N 1.46903 * 109.47247 * 180.02562 * 4 2 1 6 6 C 1.46892 * 110.99934 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47003 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47094 * 305.00086 * 7 6 5 9 9 O 1.42904 * 109.46963 * 65.00279 * 7 6 5 10 10 C 1.53001 * 109.47078 * 185.00041 * 7 6 5 11 11 N 1.46904 * 109.47206 * 180.02562 * 10 7 6 12 12 C 1.46902 * 110.99382 * 293.95164 * 11 10 7 13 13 C 1.46896 * 111.00122 * 170.00267 * 11 10 7 14 14 C 1.50705 * 109.46900 * 189.99791 * 13 11 10 15 15 H 1.07994 * 119.99841 * 359.97438 * 14 13 11 16 16 C 1.37882 * 119.99676 * 179.97438 * 14 13 11 17 17 N 1.31508 * 120.00089 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99576 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46734 * 90.00159 * 18 16 14 20 20 H 1.48497 * 109.47098 * 209.99599 * 18 16 14 21 21 H 1.48498 * 109.47386 * 330.00145 * 18 16 14 22 22 S 1.81398 * 109.46809 * 119.99485 * 2 1 3 23 23 C 1.76200 * 103.00440 * 289.98502 * 22 2 1 24 24 C 1.38971 * 120.07420 * 353.32366 * 23 22 2 25 25 C 1.38089 * 119.91563 * 179.76581 * 24 23 22 26 26 C 1.38301 * 120.07982 * 0.48357 * 25 24 23 27 27 C 1.38305 * 120.15774 * 359.77130 * 26 25 24 28 28 C 1.38080 * 120.08292 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.46963 * 55.01063 * 1 2 3 30 30 H 1.08998 * 109.47317 * 295.01383 * 1 2 3 31 31 H 1.09003 * 109.47519 * 175.01071 * 1 2 3 32 32 H 1.09003 * 109.46970 * 300.00116 * 4 2 1 33 33 H 1.08997 * 109.47382 * 60.00177 * 4 2 1 34 34 H 1.00903 * 110.99781 * 56.04325 * 5 4 2 35 35 H 1.09001 * 109.47407 * 299.99886 * 6 5 4 36 36 H 1.09004 * 109.47665 * 60.00030 * 6 5 4 37 37 H 0.96693 * 113.99996 * 59.99854 * 9 7 6 38 38 H 1.09006 * 109.47283 * 299.99507 * 10 7 6 39 39 H 1.09000 * 109.47440 * 59.99979 * 10 7 6 40 40 H 1.09000 * 109.47465 * 60.00513 * 12 11 10 41 41 H 1.09001 * 109.46819 * 179.97438 * 12 11 10 42 42 H 1.09002 * 109.47255 * 299.99797 * 12 11 10 43 43 H 1.09002 * 109.47034 * 309.98900 * 13 11 10 44 44 H 1.08999 * 109.47421 * 69.99606 * 13 11 10 45 45 H 0.97003 * 119.99988 * 180.02562 * 17 16 14 46 46 H 1.08001 * 120.04591 * 359.97438 * 24 23 22 47 47 H 1.07994 * 119.96126 * 180.23203 * 25 24 23 48 48 H 1.07999 * 119.92264 * 179.74582 * 26 25 24 49 49 H 1.08008 * 119.95697 * 179.97438 * 27 26 25 50 50 H 1.07998 * 120.03882 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5090 -0.7219 -1.2489 6 6 4.0354 -1.4071 -2.4368 7 6 5.5649 -1.3867 -2.4014 8 1 5.9123 -0.3583 -2.3032 9 8 6.0258 -2.1537 -1.2872 10 6 6.1130 -1.9888 -3.6967 11 7 7.5816 -1.9698 -3.6626 12 6 8.0905 -0.5918 -3.6749 13 6 8.1441 -2.7487 -4.7737 14 6 9.6285 -2.9130 -4.5711 15 1 10.1060 -2.4815 -3.7039 16 6 10.3766 -3.6141 -5.4929 17 7 9.7951 -4.1390 -6.5492 18 14 12.2165 -3.8171 -5.2421 19 1 12.4762 -5.0533 -4.4613 20 1 12.8882 -3.9157 -6.5628 21 1 12.7478 -2.6439 -4.5028 22 16 2.1345 -0.8550 1.4812 23 6 1.7135 0.2577 2.7809 24 6 1.1964 1.5128 2.4830 25 6 0.8630 2.3804 3.5043 26 6 1.0524 2.0054 4.8220 27 6 1.5717 0.7591 5.1219 28 6 1.9025 -0.1157 4.1061 29 1 -0.3633 0.5893 -0.8419 30 1 -0.3634 0.4345 0.9312 31 1 -0.3634 -1.0238 -0.0894 32 1 1.6766 -1.7490 -1.2491 33 1 1.6767 -0.2076 -2.1392 34 1 3.8703 -1.1357 -0.4025 35 1 3.6856 -2.4394 -2.4456 36 1 3.6863 -0.8975 -3.3349 37 1 5.7532 -3.0812 -1.3085 38 1 5.7656 -3.0173 -3.7949 39 1 5.7614 -1.4038 -4.5466 40 1 7.7137 -0.0575 -2.8028 41 1 9.1801 -0.6067 -3.6485 42 1 7.7555 -0.0888 -4.5820 43 1 7.6711 -3.7302 -4.8055 44 1 7.9612 -2.2265 -5.7128 45 1 10.3214 -4.6326 -7.1975 46 1 1.0524 1.8080 1.4542 47 1 0.4577 3.3544 3.2738 48 1 0.7946 2.6875 5.6186 49 1 1.7187 0.4698 6.1521 50 1 2.3083 -1.0885 4.3411 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570391441.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:19 Heat of formation + Delta-G solvation = -46.699700 kcal Electronic energy + Delta-G solvation = -26037.809767 eV Core-core repulsion = 22382.886807 eV Total energy + Delta-G solvation = -3654.922960 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.83300 -39.66516 -37.84263 -36.73901 -34.61977 -34.14797 -31.92651 -31.83259 -30.96198 -29.09467 -27.83029 -26.26989 -24.45474 -23.95397 -23.59243 -22.73642 -22.30275 -21.72128 -18.77228 -18.57140 -17.85919 -17.37836 -17.17490 -16.74376 -16.54271 -16.33531 -15.95126 -15.80274 -15.51974 -15.28560 -15.09199 -14.78078 -14.68602 -14.20938 -14.12229 -13.93906 -13.76921 -13.51565 -13.31919 -13.18672 -13.00359 -12.90628 -12.75643 -12.56740 -12.51809 -12.37107 -12.28479 -12.16337 -12.01027 -11.82092 -11.62071 -11.41257 -10.97106 -10.72020 -10.68049 -10.62080 -9.92460 -9.45236 -8.95956 -8.36704 -8.21155 -6.30855 0.26326 0.41894 0.53065 1.40727 1.42301 1.42584 1.53554 2.39929 2.77519 2.86979 3.11179 3.37969 3.69702 3.72936 3.87491 3.93816 4.00565 4.04782 4.09290 4.19660 4.25719 4.26075 4.42507 4.51346 4.54641 4.57588 4.59835 4.63534 4.68222 4.72828 4.75430 4.79892 4.80270 4.89861 5.06633 5.06890 5.14294 5.17158 5.18087 5.31850 5.32677 5.46186 5.57406 5.64511 5.93560 5.99231 6.05217 6.32281 6.34913 6.63522 6.85095 6.94953 7.38738 8.89724 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021920 B = 0.001747 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.087360 B =16024.750917 C =16710.622985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.064 4.064 3 H 0.099 0.901 4 C 0.079 3.921 5 N -0.693 5.693 6 C 0.038 3.962 7 C 0.127 3.873 8 H 0.094 0.906 9 O -0.561 6.561 10 C 0.025 3.975 11 N -0.539 5.539 12 C 0.041 3.959 13 C 0.207 3.793 14 C -0.524 4.524 15 H 0.060 0.940 16 C 0.001 3.999 17 N -0.934 5.934 18 Si 0.970 3.030 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.266 1.266 22 S -0.148 6.148 23 C -0.092 4.092 24 C -0.145 4.145 25 C -0.108 4.108 26 C -0.131 4.131 27 C -0.107 4.107 28 C -0.121 4.121 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.102 0.898 34 H 0.350 0.650 35 H 0.042 0.958 36 H 0.089 0.911 37 H 0.378 0.622 38 H 0.068 0.932 39 H 0.034 0.966 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.012 0.988 43 H 0.005 0.995 44 H -0.038 1.038 45 H 0.264 0.736 46 H 0.133 0.867 47 H 0.146 0.854 48 H 0.148 0.852 49 H 0.147 0.853 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.864 12.151 19.557 33.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.193 4.193 3 H 0.117 0.883 4 C -0.052 4.052 5 N -0.327 5.327 6 C -0.092 4.092 7 C 0.067 3.933 8 H 0.112 0.888 9 O -0.366 6.366 10 C -0.104 4.104 11 N -0.263 5.263 12 C -0.107 4.107 13 C 0.081 3.919 14 C -0.562 4.562 15 H 0.078 0.922 16 C -0.197 4.197 17 N -0.574 5.574 18 Si 0.794 3.206 19 H -0.199 1.199 20 H -0.206 1.206 21 H -0.190 1.190 22 S 0.096 5.904 23 C -0.205 4.205 24 C -0.168 4.168 25 C -0.127 4.127 26 C -0.151 4.151 27 C -0.126 4.126 28 C -0.145 4.145 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.120 0.880 34 H 0.170 0.830 35 H 0.060 0.940 36 H 0.107 0.893 37 H 0.226 0.774 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.030 0.970 43 H 0.023 0.977 44 H -0.021 1.021 45 H 0.073 0.927 46 H 0.150 0.850 47 H 0.164 0.836 48 H 0.166 0.834 49 H 0.165 0.835 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -23.790 11.898 19.646 33.068 hybrid contribution -0.202 -0.321 -1.167 1.227 sum -23.992 11.577 18.480 32.421 Atomic orbital electron populations 1.22096 0.91088 1.03799 1.03472 1.23487 0.99892 1.02595 0.93321 0.88253 1.21834 0.87687 0.99103 0.96535 1.60462 1.07108 1.59477 1.05626 1.22519 0.94499 0.97539 0.94616 1.21794 0.91575 0.95519 0.84390 0.88825 1.86574 1.79331 1.25692 1.45024 1.22812 0.88912 1.00973 0.97704 1.61927 1.05763 1.12850 1.45791 1.22208 1.00687 0.88722 0.99073 1.19404 0.94690 0.91569 0.86266 1.21473 0.93548 1.33695 1.07497 0.92161 1.25911 1.03905 0.95184 0.94696 1.70077 1.37888 1.36859 1.12625 0.85377 0.78874 0.78844 0.77486 1.19859 1.20608 1.19019 1.85580 1.75884 1.29295 0.99609 1.21846 1.03834 0.97798 0.96989 1.21433 1.01628 0.93032 1.00729 1.21410 0.98700 0.99921 0.92675 1.21551 0.99455 0.96894 0.97212 1.21411 0.97674 0.93861 0.99701 1.21000 1.01688 1.00805 0.90994 0.89550 0.91845 0.91315 0.94142 0.87973 0.82973 0.94004 0.89289 0.77409 0.91358 0.94748 0.90753 0.92746 0.96995 0.97721 1.02071 0.92679 0.84967 0.83632 0.83426 0.83533 0.85594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.73 71.98 0.63 -0.98 16 2 C -0.06 -0.95 2.29 30.59 0.07 -0.88 16 3 H 0.10 1.55 6.81 -2.39 -0.02 1.54 16 4 C 0.08 1.24 5.20 86.30 0.45 1.69 16 5 N -0.69 -14.36 6.49 -513.89 -3.34 -17.69 16 6 C 0.04 0.82 5.36 86.31 0.46 1.29 16 7 C 0.13 3.59 3.08 30.60 0.09 3.68 16 8 H 0.09 2.84 6.55 -2.39 -0.02 2.82 16 9 O -0.56 -17.18 12.72 -148.98 -1.90 -19.08 16 10 C 0.03 0.87 4.62 86.30 0.40 1.27 16 11 N -0.54 -23.90 4.62 -927.02 -4.28 -28.19 16 12 C 0.04 1.68 9.14 127.69 1.17 2.85 16 13 C 0.21 11.27 4.72 85.56 0.40 11.68 16 14 C -0.52 -30.51 8.46 25.60 0.22 -30.29 16 15 H 0.06 3.49 7.12 -2.91 -0.02 3.47 16 16 C 0.00 0.05 5.46 84.66 0.46 0.52 16 17 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 18 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 22 S -0.15 -2.85 19.94 -56.49 -1.13 -3.98 16 23 C -0.09 -1.73 5.97 22.62 0.14 -1.60 16 24 C -0.14 -2.31 8.04 22.41 0.18 -2.13 16 25 C -0.11 -1.39 10.04 22.25 0.22 -1.17 16 26 C -0.13 -1.56 10.04 22.30 0.22 -1.34 16 27 C -0.11 -1.45 10.04 22.25 0.22 -1.23 16 28 C -0.12 -2.13 9.79 22.41 0.22 -1.91 16 29 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.75 6.15 -2.39 -0.01 0.74 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.35 8.12 6.90 -89.69 -0.62 7.50 16 35 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.38 9.56 9.04 -74.06 -0.67 8.89 16 38 H 0.07 2.34 7.93 -2.38 -0.02 2.32 16 39 H 0.03 1.16 8.12 -2.39 -0.02 1.14 16 40 H 0.07 2.61 6.47 -2.39 -0.02 2.59 16 41 H 0.05 2.40 6.76 -2.39 -0.02 2.38 16 42 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.00 0.27 7.93 -2.39 -0.02 0.25 16 44 H -0.04 -2.25 8.12 -2.39 -0.02 -2.27 16 45 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 46 H 0.13 1.82 5.03 -2.91 -0.01 1.81 16 47 H 0.15 1.16 8.06 -2.91 -0.02 1.13 16 48 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 49 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 50 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -69.31 409.38 -3.13 -72.44 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: -0.36 Total: 24.39 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 5.56 Total: -18.57 kcal Atomic # 7 Polarization: -95.06 SS G_CDS: -7.33 Total: -102.39 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -1.90 Total: -19.08 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: -2.85 SS G_CDS: -1.13 Total: -3.98 kcal Total: -69.31 -3.13 -72.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570391441.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.738 kcal (2) G-P(sol) polarization free energy of solvation -69.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds