Wall clock time and date at job start Tue Mar 31 2020 20:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.47056 * 2 1 4 4 C 1.52998 * 109.47216 * 119.99769 * 2 1 3 5 5 N 1.46899 * 109.46971 * 180.02562 * 4 2 1 6 6 C 1.46905 * 110.99722 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.46948 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47191 * 304.99741 * 7 6 5 9 9 O 1.42903 * 109.47213 * 64.99735 * 7 6 5 10 10 C 1.53004 * 109.47060 * 184.99989 * 7 6 5 11 11 N 1.46902 * 109.47046 * 180.02562 * 10 7 6 12 12 C 1.46907 * 110.99506 * 293.95304 * 11 10 7 13 13 C 1.46897 * 110.99869 * 169.99843 * 11 10 7 14 14 C 1.50700 * 109.47029 * 189.99600 * 13 11 10 15 15 H 1.08002 * 120.00103 * 359.97438 * 14 13 11 16 16 C 1.37877 * 119.99908 * 180.02562 * 14 13 11 17 17 N 1.31512 * 120.00310 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00034 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47063 * 59.99945 * 18 16 14 20 20 H 1.48501 * 109.47305 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47192 * 300.00257 * 18 16 14 22 22 S 1.81396 * 109.47163 * 239.99922 * 2 1 3 23 23 C 1.76206 * 103.00104 * 67.32736 * 22 2 1 24 24 C 1.38975 * 120.08012 * 263.72338 * 23 22 2 25 25 C 1.38077 * 119.91871 * 180.29821 * 24 23 22 26 26 C 1.38304 * 120.08214 * 359.97376 * 25 24 23 27 27 C 1.38303 * 120.15912 * 0.02562 * 26 25 24 28 28 C 1.38080 * 120.08298 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47089 * 301.95678 * 1 2 3 30 30 H 1.08998 * 109.46906 * 61.96441 * 1 2 3 31 31 H 1.08998 * 109.46756 * 181.96118 * 1 2 3 32 32 H 1.09003 * 109.47038 * 300.00084 * 4 2 1 33 33 H 1.09004 * 109.46919 * 60.00147 * 4 2 1 34 34 H 1.00902 * 110.99940 * 303.94984 * 5 4 2 35 35 H 1.09004 * 109.47137 * 299.99696 * 6 5 4 36 36 H 1.08996 * 109.46957 * 59.99817 * 6 5 4 37 37 H 0.96694 * 113.99815 * 60.00602 * 9 7 6 38 38 H 1.08997 * 109.46916 * 299.99920 * 10 7 6 39 39 H 1.08997 * 109.46880 * 59.99560 * 10 7 6 40 40 H 1.08998 * 109.47562 * 60.00204 * 12 11 10 41 41 H 1.09008 * 109.46724 * 180.02562 * 12 11 10 42 42 H 1.08997 * 109.47067 * 299.99656 * 12 11 10 43 43 H 1.08994 * 109.47487 * 309.99807 * 13 11 10 44 44 H 1.09006 * 109.46994 * 70.00184 * 13 11 10 45 45 H 0.96994 * 120.00292 * 180.02562 * 17 16 14 46 46 H 1.07999 * 120.04040 * 0.27789 * 24 23 22 47 47 H 1.08003 * 119.95680 * 179.97438 * 25 24 23 48 48 H 1.07996 * 119.92117 * 179.97438 * 26 25 24 49 49 H 1.07998 * 119.95726 * 179.97438 * 27 26 25 50 50 H 1.07998 * 120.04362 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5091 -0.7206 1.2495 6 6 4.0355 -1.4068 2.4370 7 6 5.5649 -1.3853 2.4022 8 1 5.9131 -1.8139 1.4625 9 8 6.0249 -0.0366 2.5099 10 6 6.1132 -2.2060 3.5713 11 7 7.5817 -2.1848 3.5383 12 6 8.0917 -2.8837 2.3510 13 6 8.1442 -2.7576 4.7685 14 6 9.6283 -2.4990 4.8102 15 1 10.1059 -1.9631 4.0032 16 6 10.3765 -2.9474 5.8779 17 7 9.7952 -3.6012 6.8599 18 14 12.2159 -2.6262 5.9299 19 1 12.4636 -1.1621 5.9080 20 1 12.7848 -3.2064 7.1729 21 1 12.8618 -3.2552 4.7499 22 16 2.1347 -0.8551 -1.4811 23 6 1.6429 0.2197 -2.7879 24 6 0.4620 -0.0205 -3.4802 25 6 0.0830 0.8203 -4.5078 26 6 0.8765 1.9007 -4.8480 27 6 2.0523 2.1428 -4.1613 28 6 2.4384 1.3057 -3.1333 29 1 -0.3633 0.5439 0.8719 30 1 -0.3633 0.4830 -0.9071 31 1 -0.3633 -1.0271 0.0352 32 1 1.6767 -0.2073 2.1392 33 1 1.6768 -1.7489 1.2492 34 1 3.8710 -1.1341 0.4032 35 1 3.6857 -0.8983 3.3354 36 1 3.6864 -2.4393 2.4445 37 1 5.7518 0.4083 3.3238 38 1 5.7651 -1.7774 4.5110 39 1 5.7623 -3.2347 3.4891 40 1 7.7149 -2.3956 1.4522 41 1 9.1814 -2.8534 2.3517 42 1 7.7575 -3.9210 2.3685 43 1 7.6704 -2.2952 5.6344 44 1 7.9621 -3.8322 4.7853 45 1 10.3215 -3.9163 7.6112 46 1 -0.1582 -0.8639 -3.2150 47 1 -0.8344 0.6340 -5.0464 48 1 0.5777 2.5565 -5.6524 49 1 2.6698 2.9872 -4.4299 50 1 3.3569 1.4951 -2.5977 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570391442.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:24 Heat of formation + Delta-G solvation = -23.715652 kcal Electronic energy + Delta-G solvation = -25982.601061 eV Core-core repulsion = 22328.674764 eV Total energy + Delta-G solvation = -3653.926297 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.31931 -38.31867 -36.62702 -35.26535 -33.13747 -32.46809 -31.40219 -31.34720 -29.62382 -27.21707 -26.52251 -24.80887 -23.28197 -23.04710 -22.96516 -22.01105 -21.12090 -20.09869 -18.14609 -16.87741 -16.56443 -16.41249 -15.81423 -15.61280 -15.40505 -15.29750 -14.79615 -14.66170 -14.33074 -14.22130 -13.92171 -13.87055 -13.58854 -13.36322 -13.16798 -12.93498 -12.68966 -12.40950 -12.25578 -11.91735 -11.83393 -11.63052 -11.58361 -11.29202 -11.26449 -11.07288 -10.84420 -10.71147 -10.63298 -10.56364 -10.24302 -9.93224 -9.51945 -9.39515 -9.17170 -9.06980 -8.51978 -8.40169 -8.00148 -7.15144 -5.99521 -4.00361 0.52638 0.94712 1.44642 2.29353 3.32509 3.36836 3.40090 3.44006 3.83762 4.44458 4.45045 4.48740 4.54115 4.64537 4.65269 4.82427 4.85889 4.96038 4.99885 5.05985 5.17488 5.20756 5.28115 5.29789 5.35457 5.40241 5.43842 5.56052 5.57297 5.61773 5.67905 5.73464 5.74483 5.91124 5.93775 6.02753 6.10571 6.24914 6.34870 6.44401 6.45523 6.81393 6.82444 7.25373 7.30869 7.36468 7.83908 8.09252 8.19898 8.25950 8.59589 9.07509 9.63652 11.11408 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023834 B = 0.001722 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.493437 B =16253.654552 C =16927.930673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.065 4.065 3 H 0.097 0.903 4 C 0.078 3.922 5 N -0.678 5.678 6 C 0.026 3.974 7 C 0.118 3.882 8 H 0.091 0.909 9 O -0.535 6.535 10 C 0.024 3.976 11 N -0.528 5.528 12 C 0.037 3.963 13 C 0.192 3.808 14 C -0.505 4.505 15 H 0.064 0.936 16 C 0.054 3.946 17 N -0.901 5.901 18 Si 0.899 3.101 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.277 1.277 22 S -0.152 6.152 23 C -0.111 4.111 24 C -0.073 4.073 25 C -0.131 4.131 26 C -0.098 4.098 27 C -0.128 4.128 28 C -0.072 4.072 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.037 0.963 34 H 0.348 0.652 35 H 0.075 0.925 36 H 0.036 0.964 37 H 0.368 0.632 38 H 0.069 0.931 39 H 0.026 0.974 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.007 0.993 43 H 0.028 0.972 44 H -0.011 1.011 45 H 0.261 0.739 46 H 0.130 0.870 47 H 0.126 0.874 48 H 0.125 0.875 49 H 0.128 0.872 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.383 8.859 -20.298 32.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.193 4.193 3 H 0.115 0.885 4 C -0.052 4.052 5 N -0.311 5.311 6 C -0.104 4.104 7 C 0.058 3.942 8 H 0.109 0.891 9 O -0.338 6.338 10 C -0.106 4.106 11 N -0.252 5.252 12 C -0.112 4.112 13 C 0.067 3.933 14 C -0.544 4.544 15 H 0.082 0.918 16 C -0.147 4.147 17 N -0.541 5.541 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.203 1.203 22 S 0.081 5.919 23 C -0.223 4.223 24 C -0.094 4.094 25 C -0.151 4.151 26 C -0.116 4.116 27 C -0.148 4.148 28 C -0.093 4.093 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.169 0.831 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.214 0.786 38 H 0.088 0.912 39 H 0.044 0.956 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.026 0.974 43 H 0.046 0.954 44 H 0.006 0.994 45 H 0.071 0.929 46 H 0.148 0.852 47 H 0.144 0.856 48 H 0.143 0.857 49 H 0.146 0.854 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.284 8.721 -20.451 32.194 hybrid contribution -0.437 -0.464 0.516 0.820 sum -23.721 8.258 -19.935 32.067 Atomic orbital electron populations 1.22063 0.93003 1.03017 1.02431 1.23418 0.98449 1.02972 0.94492 0.88481 1.21766 0.89105 0.98542 0.95833 1.60454 1.05592 1.59593 1.05465 1.22744 0.97081 0.96626 0.93945 1.21837 0.89468 0.84021 0.98915 0.89071 1.86590 1.78231 1.24476 1.44516 1.22726 0.91686 0.97790 0.98363 1.62013 1.02954 1.55734 1.04514 1.22250 1.01917 0.94307 0.92727 1.19742 0.95272 0.92424 0.85825 1.21142 0.92285 1.35195 1.05757 0.91820 1.24994 0.98832 0.95307 0.95574 1.69948 1.36013 1.38465 1.09643 0.86543 0.85007 0.78619 0.77134 1.20118 1.21419 1.20308 1.85467 1.76924 1.31704 0.97780 1.21662 0.98569 1.00285 1.01754 1.21578 0.94695 0.98443 0.94639 1.21216 1.00320 0.95575 0.97944 1.21351 0.94423 0.97033 0.98832 1.21257 0.97175 0.99941 0.96380 1.21707 0.98701 0.92827 0.96023 0.91577 0.92236 0.91450 0.89595 0.94532 0.83147 0.90611 0.94625 0.78618 0.91202 0.95576 0.93417 0.90708 0.97446 0.95383 0.99364 0.92941 0.85237 0.85586 0.85706 0.85429 0.84843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.13 37.16 0.34 -0.65 16 2 C -0.07 -0.55 3.03 -26.73 -0.08 -0.63 16 3 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16 4 C 0.08 0.71 5.20 -3.83 -0.02 0.69 16 5 N -0.68 -7.57 6.44 -113.78 -0.73 -8.30 16 6 C 0.03 0.31 5.32 -3.82 -0.02 0.29 16 7 C 0.12 1.74 3.02 -26.73 -0.08 1.66 16 8 H 0.09 1.41 6.55 -51.93 -0.34 1.07 16 9 O -0.53 -8.70 13.15 -35.23 -0.46 -9.17 16 10 C 0.02 0.43 4.62 -3.82 -0.02 0.41 16 11 N -0.53 -11.66 4.62 -244.36 -1.13 -12.79 16 12 C 0.04 0.75 9.14 60.07 0.55 1.29 16 13 C 0.19 5.11 4.72 -4.98 -0.02 5.09 16 14 C -0.51 -14.50 8.46 -34.44 -0.29 -14.79 16 15 H 0.06 1.82 7.12 -52.49 -0.37 1.45 16 16 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 18 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 S -0.15 -1.46 19.72 -107.50 -2.12 -3.58 16 23 C -0.11 -1.01 5.21 -39.03 -0.20 -1.21 16 24 C -0.07 -0.56 9.21 -39.37 -0.36 -0.93 16 25 C -0.13 -0.85 10.04 -39.62 -0.40 -1.24 16 26 C -0.10 -0.62 10.04 -39.53 -0.40 -1.02 16 27 C -0.13 -0.91 10.04 -39.62 -0.40 -1.30 16 28 C -0.07 -0.62 9.79 -39.37 -0.39 -1.01 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.42 7.12 -51.93 -0.37 0.05 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.35 4.09 7.34 -39.29 -0.29 3.80 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.37 5.02 9.04 45.56 0.41 5.44 16 38 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 39 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 40 H 0.05 0.86 6.47 -51.93 -0.34 0.52 16 41 H 0.07 1.64 6.76 -51.92 -0.35 1.29 16 42 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 43 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 44 H -0.01 -0.32 8.12 -51.93 -0.42 -0.75 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 47 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 48 H 0.12 0.50 8.06 -52.49 -0.42 0.08 16 49 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 50 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 416.76 15.07 6.28 6.28 Total: -1.00 -32.09 416.76 -12.28 -44.38 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -7.95 Total: 4.43 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -1.89 Total: -11.90 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -1.13 Total: -47.43 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.46 Total: -9.17 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.12 Total: -3.58 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.09 -12.28 -44.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570391442.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.660 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds