Wall clock time and date at job start Tue Mar 31 2020 20:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.47056 * 2 1 4 4 C 1.52998 * 109.47216 * 119.99769 * 2 1 3 5 5 N 1.46899 * 109.46971 * 180.02562 * 4 2 1 6 6 C 1.46905 * 110.99722 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.46948 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47191 * 304.99741 * 7 6 5 9 9 O 1.42903 * 109.47213 * 64.99735 * 7 6 5 10 10 C 1.53004 * 109.47060 * 184.99989 * 7 6 5 11 11 N 1.46902 * 109.47046 * 180.02562 * 10 7 6 12 12 C 1.46907 * 110.99506 * 293.95304 * 11 10 7 13 13 C 1.46897 * 110.99869 * 169.99843 * 11 10 7 14 14 C 1.50700 * 109.47029 * 189.99600 * 13 11 10 15 15 H 1.08002 * 120.00103 * 359.97438 * 14 13 11 16 16 C 1.37877 * 119.99908 * 180.02562 * 14 13 11 17 17 N 1.31512 * 120.00310 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00034 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47063 * 59.99945 * 18 16 14 20 20 H 1.48501 * 109.47305 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47192 * 300.00257 * 18 16 14 22 22 S 1.81396 * 109.47163 * 239.99922 * 2 1 3 23 23 C 1.76206 * 103.00104 * 67.32736 * 22 2 1 24 24 C 1.38975 * 120.08012 * 263.72338 * 23 22 2 25 25 C 1.38077 * 119.91871 * 180.29821 * 24 23 22 26 26 C 1.38304 * 120.08214 * 359.97376 * 25 24 23 27 27 C 1.38303 * 120.15912 * 0.02562 * 26 25 24 28 28 C 1.38080 * 120.08298 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47089 * 301.95678 * 1 2 3 30 30 H 1.08998 * 109.46906 * 61.96441 * 1 2 3 31 31 H 1.08998 * 109.46756 * 181.96118 * 1 2 3 32 32 H 1.09003 * 109.47038 * 300.00084 * 4 2 1 33 33 H 1.09004 * 109.46919 * 60.00147 * 4 2 1 34 34 H 1.00902 * 110.99940 * 303.94984 * 5 4 2 35 35 H 1.09004 * 109.47137 * 299.99696 * 6 5 4 36 36 H 1.08996 * 109.46957 * 59.99817 * 6 5 4 37 37 H 0.96694 * 113.99815 * 60.00602 * 9 7 6 38 38 H 1.08997 * 109.46916 * 299.99920 * 10 7 6 39 39 H 1.08997 * 109.46880 * 59.99560 * 10 7 6 40 40 H 1.08998 * 109.47562 * 60.00204 * 12 11 10 41 41 H 1.09008 * 109.46724 * 180.02562 * 12 11 10 42 42 H 1.08997 * 109.47067 * 299.99656 * 12 11 10 43 43 H 1.08994 * 109.47487 * 309.99807 * 13 11 10 44 44 H 1.09006 * 109.46994 * 70.00184 * 13 11 10 45 45 H 0.96994 * 120.00292 * 180.02562 * 17 16 14 46 46 H 1.07999 * 120.04040 * 0.27789 * 24 23 22 47 47 H 1.08003 * 119.95680 * 179.97438 * 25 24 23 48 48 H 1.07996 * 119.92117 * 179.97438 * 26 25 24 49 49 H 1.07998 * 119.95726 * 179.97438 * 27 26 25 50 50 H 1.07998 * 120.04362 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5091 -0.7206 1.2495 6 6 4.0355 -1.4068 2.4370 7 6 5.5649 -1.3853 2.4022 8 1 5.9131 -1.8139 1.4625 9 8 6.0249 -0.0366 2.5099 10 6 6.1132 -2.2060 3.5713 11 7 7.5817 -2.1848 3.5383 12 6 8.0917 -2.8837 2.3510 13 6 8.1442 -2.7576 4.7685 14 6 9.6283 -2.4990 4.8102 15 1 10.1059 -1.9631 4.0032 16 6 10.3765 -2.9474 5.8779 17 7 9.7952 -3.6012 6.8599 18 14 12.2159 -2.6262 5.9299 19 1 12.4636 -1.1621 5.9080 20 1 12.7848 -3.2064 7.1729 21 1 12.8618 -3.2552 4.7499 22 16 2.1347 -0.8551 -1.4811 23 6 1.6429 0.2197 -2.7879 24 6 0.4620 -0.0205 -3.4802 25 6 0.0830 0.8203 -4.5078 26 6 0.8765 1.9007 -4.8480 27 6 2.0523 2.1428 -4.1613 28 6 2.4384 1.3057 -3.1333 29 1 -0.3633 0.5439 0.8719 30 1 -0.3633 0.4830 -0.9071 31 1 -0.3633 -1.0271 0.0352 32 1 1.6767 -0.2073 2.1392 33 1 1.6768 -1.7489 1.2492 34 1 3.8710 -1.1341 0.4032 35 1 3.6857 -0.8983 3.3354 36 1 3.6864 -2.4393 2.4445 37 1 5.7518 0.4083 3.3238 38 1 5.7651 -1.7774 4.5110 39 1 5.7623 -3.2347 3.4891 40 1 7.7149 -2.3956 1.4522 41 1 9.1814 -2.8534 2.3517 42 1 7.7575 -3.9210 2.3685 43 1 7.6704 -2.2952 5.6344 44 1 7.9621 -3.8322 4.7853 45 1 10.3215 -3.9163 7.6112 46 1 -0.1582 -0.8639 -3.2150 47 1 -0.8344 0.6340 -5.0464 48 1 0.5777 2.5565 -5.6524 49 1 2.6698 2.9872 -4.4299 50 1 3.3569 1.4951 -2.5977 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570391442.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:23 Heat of formation + Delta-G solvation = -45.720953 kcal Electronic energy + Delta-G solvation = -25983.555282 eV Core-core repulsion = 22328.674764 eV Total energy + Delta-G solvation = -3654.880518 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.84659 -39.59889 -37.78297 -36.65816 -34.60534 -33.94993 -31.93616 -31.90929 -30.94235 -29.08839 -27.82143 -26.23612 -24.43659 -23.80051 -23.52448 -22.86699 -22.38088 -21.70603 -18.72905 -18.55793 -17.74724 -17.27701 -16.98014 -16.83071 -16.55417 -16.13663 -15.96469 -15.92478 -15.57027 -15.23525 -15.03403 -14.84872 -14.54474 -14.38369 -14.22756 -13.84664 -13.71811 -13.56329 -13.25910 -13.18007 -12.97145 -12.87550 -12.69788 -12.56343 -12.53308 -12.38787 -12.27050 -12.10699 -11.99269 -11.88246 -11.62149 -11.40703 -11.19903 -10.63225 -10.61169 -9.93930 -9.75548 -9.38305 -8.95661 -8.72731 -8.20352 -6.30238 -0.04407 0.40447 0.80332 1.41142 1.44534 1.52508 1.64630 2.40551 2.77633 2.89024 3.11872 3.40475 3.72447 3.82826 3.91566 3.93969 4.04486 4.06067 4.14374 4.20197 4.23670 4.32949 4.43690 4.50157 4.52888 4.53483 4.60542 4.67290 4.67682 4.72124 4.77093 4.77856 4.79022 4.95879 5.05494 5.06559 5.14857 5.17519 5.18396 5.31375 5.37878 5.40865 5.50894 5.64776 5.93938 5.96477 6.05839 6.31908 6.35294 6.64221 6.85480 7.06335 7.39297 8.90340 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023834 B = 0.001722 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.493437 B =16253.654552 C =16927.930673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.054 4.054 3 H 0.085 0.915 4 C 0.081 3.919 5 N -0.685 5.685 6 C 0.038 3.962 7 C 0.130 3.870 8 H 0.086 0.914 9 O -0.553 6.553 10 C 0.024 3.976 11 N -0.538 5.538 12 C 0.041 3.959 13 C 0.207 3.793 14 C -0.525 4.525 15 H 0.060 0.940 16 C 0.001 3.999 17 N -0.934 5.934 18 Si 0.970 3.030 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.268 1.268 22 S -0.184 6.184 23 C -0.124 4.124 24 C -0.082 4.082 25 C -0.131 4.131 26 C -0.099 4.099 27 C -0.133 4.133 28 C -0.092 4.092 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.040 0.960 34 H 0.344 0.656 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.378 0.622 38 H 0.070 0.930 39 H 0.031 0.969 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.010 0.990 43 H 0.005 0.995 44 H -0.039 1.039 45 H 0.264 0.736 46 H 0.136 0.864 47 H 0.151 0.849 48 H 0.151 0.849 49 H 0.144 0.856 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.390 9.861 -21.655 34.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.182 4.182 3 H 0.104 0.896 4 C -0.050 4.050 5 N -0.318 5.318 6 C -0.093 4.093 7 C 0.070 3.930 8 H 0.104 0.896 9 O -0.358 6.358 10 C -0.105 4.105 11 N -0.262 5.262 12 C -0.108 4.108 13 C 0.081 3.919 14 C -0.563 4.563 15 H 0.079 0.921 16 C -0.197 4.197 17 N -0.574 5.574 18 Si 0.794 3.206 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.193 1.193 22 S 0.049 5.951 23 C -0.235 4.235 24 C -0.103 4.103 25 C -0.150 4.150 26 C -0.117 4.117 27 C -0.153 4.153 28 C -0.113 4.113 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.058 0.942 34 H 0.164 0.836 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.226 0.774 38 H 0.089 0.911 39 H 0.049 0.951 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.029 0.971 43 H 0.024 0.976 44 H -0.022 1.022 45 H 0.073 0.927 46 H 0.154 0.846 47 H 0.168 0.832 48 H 0.169 0.831 49 H 0.162 0.838 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -24.314 9.734 -21.821 34.089 hybrid contribution -0.199 -0.746 0.880 1.171 sum -24.513 8.988 -20.940 33.469 Atomic orbital electron populations 1.22009 0.91574 1.03420 1.02869 1.23353 0.99467 1.01878 0.93541 0.89618 1.21807 0.87708 0.98943 0.96505 1.60447 1.06968 1.59446 1.04950 1.22549 0.94609 0.97369 0.94726 1.21690 0.91431 0.82855 0.97009 0.89630 1.86555 1.78814 1.25026 1.45377 1.22833 0.88923 0.98749 0.99984 1.61928 1.05714 1.55393 1.03188 1.22216 1.00767 0.94764 0.93003 1.19402 0.94710 0.90550 0.87252 1.21444 0.93542 1.35403 1.05928 0.92134 1.25909 1.03907 0.94808 0.95029 1.70070 1.37952 1.39191 1.10236 0.85433 0.78863 0.78753 0.77541 1.19384 1.20674 1.19349 1.85484 1.77649 1.32693 0.99225 1.21698 0.99448 1.00483 1.01903 1.21731 0.94423 0.99088 0.95061 1.21547 1.01092 0.95042 0.97351 1.21706 0.93775 0.97166 0.99024 1.21509 0.97826 1.00066 0.95857 1.21759 0.98810 0.93606 0.97074 0.90377 0.92422 0.91094 0.88558 0.94224 0.83614 0.89582 0.93921 0.77412 0.91127 0.95115 0.90738 0.92650 0.97130 0.97650 1.02177 0.92677 0.84599 0.83165 0.83088 0.83827 0.85685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.13 71.98 0.66 -1.06 16 2 C -0.05 -0.88 3.03 30.60 0.09 -0.79 16 3 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 4 C 0.08 1.36 5.20 86.30 0.45 1.81 16 5 N -0.69 -14.60 6.44 -513.88 -3.31 -17.91 16 6 C 0.04 0.83 5.32 86.30 0.46 1.29 16 7 C 0.13 3.73 3.02 30.59 0.09 3.82 16 8 H 0.09 2.56 6.55 -2.39 -0.02 2.54 16 9 O -0.55 -17.52 13.15 -148.98 -1.96 -19.47 16 10 C 0.02 0.85 4.62 86.30 0.40 1.25 16 11 N -0.54 -23.98 4.62 -927.03 -4.28 -28.26 16 12 C 0.04 1.66 9.14 127.69 1.17 2.83 16 13 C 0.21 11.32 4.72 85.56 0.40 11.73 16 14 C -0.52 -30.62 8.46 25.60 0.22 -30.41 16 15 H 0.06 3.50 7.12 -2.91 -0.02 3.48 16 16 C 0.00 0.08 5.46 84.65 0.46 0.54 16 17 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 18 Si 0.97 45.20 29.54 68.60 2.03 47.22 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 S -0.18 -3.54 19.72 -56.49 -1.11 -4.65 16 23 C -0.12 -2.22 5.21 22.62 0.12 -2.10 16 24 C -0.08 -1.20 9.21 22.41 0.21 -0.99 16 25 C -0.13 -1.43 10.04 22.25 0.22 -1.21 16 26 C -0.10 -1.03 10.04 22.30 0.22 -0.81 16 27 C -0.13 -1.74 10.04 22.25 0.22 -1.51 16 28 C -0.09 -1.59 9.79 22.41 0.22 -1.37 16 29 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.74 7.12 -2.39 -0.02 0.73 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.34 7.89 7.34 -89.69 -0.66 7.23 16 35 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.38 10.01 9.04 -74.06 -0.67 9.34 16 38 H 0.07 2.44 7.93 -2.39 -0.02 2.42 16 39 H 0.03 1.06 8.12 -2.39 -0.02 1.04 16 40 H 0.07 2.61 6.47 -2.39 -0.02 2.59 16 41 H 0.05 2.44 6.76 -2.38 -0.02 2.43 16 42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.01 0.31 7.93 -2.39 -0.02 0.30 16 44 H -0.04 -2.33 8.12 -2.38 -0.02 -2.35 16 45 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 46 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 47 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 48 H 0.15 0.74 8.06 -2.91 -0.02 0.72 16 49 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 50 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -69.33 416.76 -3.15 -72.49 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: -0.41 Total: 24.21 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 5.61 Total: -16.99 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -7.31 Total: -102.80 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -1.96 Total: -19.47 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.11 Total: -4.65 kcal Total: -69.33 -3.15 -72.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570391442.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.766 kcal (2) G-P(sol) polarization free energy of solvation -69.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds