Wall clock time and date at job start Tue Mar 31 2020 21:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81398 * 102.99699 * 2 1 4 4 C 1.50703 * 109.46737 * 180.02562 * 3 2 1 5 5 C 1.38261 * 119.99879 * 270.01668 * 4 3 2 6 6 C 1.38212 * 119.99745 * 179.97438 * 5 4 3 7 7 C 1.38255 * 120.00049 * 0.09547 * 6 5 4 8 8 C 1.38212 * 120.00393 * 359.86133 * 7 6 5 9 9 C 1.50701 * 120.00210 * 180.36542 * 8 7 6 10 10 N 1.46895 * 109.47121 * 269.72351 * 9 8 7 11 11 C 1.46902 * 110.99758 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.46804 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.46914 * 60.00372 * 12 11 10 14 14 O 1.42894 * 109.47405 * 300.00287 * 12 11 10 15 15 C 1.53003 * 109.46862 * 180.02562 * 12 11 10 16 16 N 1.46902 * 109.47099 * 180.46386 * 15 12 11 17 17 C 1.46895 * 110.99784 * 199.84846 * 16 15 12 18 18 C 1.46906 * 110.99663 * 75.89616 * 16 15 12 19 19 C 1.50703 * 109.46528 * 189.99900 * 18 16 15 20 20 H 1.07998 * 120.00180 * 0.02562 * 19 18 16 21 21 C 1.37878 * 119.99627 * 180.02562 * 19 18 16 22 22 N 1.31513 * 120.00174 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99726 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47114 * 60.00240 * 23 21 19 25 25 H 1.48504 * 109.46989 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47312 * 299.99703 * 23 21 19 27 27 C 1.38209 * 119.99964 * 90.00465 * 4 3 2 28 28 H 1.08990 * 109.47155 * 299.99699 * 1 2 3 29 29 H 1.08998 * 109.47493 * 60.00525 * 1 2 3 30 30 H 1.09001 * 109.46896 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47281 * 60.00246 * 3 2 1 32 32 H 1.08995 * 109.47305 * 299.99678 * 3 2 1 33 33 H 1.07996 * 119.99625 * 0.02562 * 5 4 3 34 34 H 1.08001 * 120.00069 * 180.02562 * 6 5 4 35 35 H 1.08000 * 119.99576 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.46819 * 29.72583 * 9 8 7 37 37 H 1.08999 * 109.46432 * 149.72542 * 9 8 7 38 38 H 1.00897 * 111.00803 * 303.95608 * 10 9 8 39 39 H 1.08998 * 109.47331 * 300.00003 * 11 10 9 40 40 H 1.08998 * 109.46730 * 60.00546 * 11 10 9 41 41 H 0.96703 * 113.99833 * 300.00028 * 14 12 11 42 42 H 1.09004 * 109.46829 * 300.46266 * 15 12 11 43 43 H 1.08997 * 109.47005 * 60.46111 * 15 12 11 44 44 H 1.09003 * 109.46954 * 64.82253 * 17 16 15 45 45 H 1.09004 * 109.46621 * 184.81950 * 17 16 15 46 46 H 1.09001 * 109.47564 * 304.82270 * 17 16 15 47 47 H 1.08993 * 109.47226 * 310.00089 * 18 16 15 48 48 H 1.09003 * 109.47111 * 70.00046 * 18 16 15 49 49 H 0.97003 * 119.99937 * 180.02562 * 22 21 19 50 50 H 1.07996 * 120.00264 * 359.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9373 -0.0006 5 6 4.4069 2.0148 1.1965 6 6 5.7802 2.1700 1.1959 7 6 6.4664 2.2498 -0.0018 8 6 5.7793 2.1715 -1.1985 9 6 6.5282 2.2502 -2.5039 10 7 6.6149 3.6519 -2.9348 11 6 7.3408 3.7675 -4.2068 12 6 7.4109 5.2385 -4.6219 13 1 7.9323 5.8086 -3.8529 14 8 6.0871 5.7525 -4.7805 15 6 8.1664 5.3589 -5.9470 16 7 8.2434 6.7723 -6.3400 17 6 8.5215 6.9048 -7.7763 18 6 9.2481 7.4868 -5.5411 19 6 9.1303 8.9678 -5.7939 20 1 8.3835 9.3409 -6.4791 21 6 9.9758 9.8464 -5.1504 22 7 10.8855 9.3920 -4.3164 23 14 9.8293 11.6821 -5.4632 24 1 8.4716 12.1432 -5.0772 25 1 10.8450 12.4045 -4.6557 26 1 10.0547 11.9582 -6.9048 27 6 4.4055 2.0154 -1.1979 28 1 -0.3633 0.5137 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8031 2.2371 0.8900 32 1 1.8031 2.2371 -0.8900 33 1 3.8707 1.9531 2.1319 34 1 6.3173 2.2301 2.1309 35 1 7.5395 2.3715 -0.0022 36 1 7.5325 1.8480 -2.3714 37 1 6.0010 1.6694 -3.2607 38 1 5.6978 4.0669 -3.0025 39 1 8.3507 3.3760 -4.0857 40 1 6.8196 3.1971 -4.9756 41 1 5.5639 5.2915 -5.4505 42 1 9.1736 4.9593 -5.8286 43 1 7.6402 4.7956 -6.7176 44 1 7.6844 6.5028 -8.3471 45 1 8.6582 7.9575 -8.0242 46 1 9.4282 6.3526 -8.0234 47 1 9.0820 7.2844 -4.4831 48 1 10.2449 7.1481 -5.8236 49 1 11.4802 10.0101 -3.8634 50 1 3.8686 1.9543 -2.1329 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572028956.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:26 Heat of formation + Delta-G solvation = -27.078579 kcal Electronic energy + Delta-G solvation = -26001.619810 eV Core-core repulsion = 22347.547686 eV Total energy + Delta-G solvation = -3654.072124 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.74686 -38.18349 -36.09497 -35.04395 -33.08695 -32.44806 -31.64518 -29.55986 -29.42334 -27.38356 -27.24209 -26.35948 -24.47828 -23.12457 -22.23822 -21.48906 -20.85045 -20.00163 -17.10151 -16.58647 -16.37926 -16.19211 -16.06052 -15.63688 -15.26916 -14.94047 -14.73005 -14.56772 -14.34161 -14.32674 -14.02825 -13.88293 -13.63644 -13.25954 -13.16625 -13.00203 -12.95202 -12.44955 -12.40538 -12.10788 -11.93771 -11.82810 -11.39267 -11.24001 -11.19418 -11.10082 -10.86130 -10.69444 -10.60681 -10.50514 -10.31194 -9.72578 -9.60690 -9.12647 -9.03627 -8.83833 -8.41006 -8.37319 -8.08855 -7.17093 -5.97320 -3.97843 0.71991 1.16754 1.65127 2.19775 3.37512 3.41220 3.44768 3.55115 4.14955 4.29332 4.41773 4.48231 4.65500 4.68640 4.70754 4.79602 4.82984 4.89587 4.96827 5.06805 5.17573 5.24575 5.26366 5.33735 5.36931 5.40719 5.41726 5.48457 5.62238 5.74072 5.78416 5.81861 5.85447 6.05894 6.15130 6.24242 6.29207 6.34161 6.43752 6.56415 6.74386 6.76659 6.94669 7.32489 7.35912 7.38373 7.84174 8.09281 8.15582 8.25446 8.60136 9.08917 9.65641 11.13681 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015915 B = 0.001796 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.948250 B =15583.303489 C =15986.234404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.256 6.256 3 C -0.041 4.041 4 C -0.080 4.080 5 C -0.101 4.101 6 C -0.121 4.121 7 C -0.088 4.088 8 C -0.079 4.079 9 C 0.098 3.902 10 N -0.677 5.677 11 C 0.029 3.971 12 C 0.117 3.883 13 H 0.111 0.889 14 O -0.540 6.540 15 C 0.026 3.974 16 N -0.531 5.531 17 C 0.038 3.962 18 C 0.193 3.807 19 C -0.505 4.505 20 H 0.062 0.938 21 C 0.054 3.946 22 N -0.899 5.899 23 Si 0.898 3.102 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.278 1.278 27 C -0.092 4.092 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.036 0.964 38 H 0.349 0.651 39 H 0.079 0.921 40 H 0.028 0.972 41 H 0.358 0.642 42 H 0.033 0.967 43 H 0.058 0.942 44 H 0.043 0.957 45 H 0.077 0.923 46 H 0.007 0.993 47 H 0.032 0.968 48 H -0.012 1.012 49 H 0.261 0.739 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.807 -21.245 8.164 28.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S -0.028 6.028 3 C -0.189 4.189 4 C -0.081 4.081 5 C -0.121 4.121 6 C -0.139 4.139 7 C -0.108 4.108 8 C -0.079 4.079 9 C -0.031 4.031 10 N -0.309 5.309 11 C -0.101 4.101 12 C 0.057 3.943 13 H 0.129 0.871 14 O -0.342 6.342 15 C -0.104 4.104 16 N -0.255 5.255 17 C -0.111 4.111 18 C 0.067 3.933 19 C -0.544 4.544 20 H 0.080 0.920 21 C -0.147 4.147 22 N -0.539 5.539 23 Si 0.726 3.274 24 H -0.201 1.201 25 H -0.214 1.214 26 H -0.204 1.204 27 C -0.113 4.113 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.119 0.881 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.169 0.831 39 H 0.097 0.903 40 H 0.046 0.954 41 H 0.203 0.797 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.095 0.905 46 H 0.026 0.974 47 H 0.050 0.950 48 H 0.006 0.994 49 H 0.071 0.929 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.741 -21.306 9.216 28.048 hybrid contribution -0.789 0.868 -1.292 1.745 sum -16.529 -20.439 7.924 27.455 Atomic orbital electron populations 1.23412 0.94618 1.06520 1.04942 1.87224 1.06726 1.10838 1.98037 1.22298 0.96156 0.94676 1.05747 1.19072 0.92707 1.02477 0.93873 1.20989 0.94465 0.99483 0.97170 1.21138 0.94121 1.00334 0.98260 1.21123 1.00363 0.97579 0.91690 1.19756 0.93261 0.99738 0.95176 1.20890 0.99683 0.90069 0.92453 1.60358 1.24616 1.14962 1.31011 1.22703 0.99419 0.98247 0.89687 1.21977 0.83868 0.91389 0.97096 0.87135 1.86709 1.24714 1.61613 1.61214 1.22662 0.98699 0.92269 0.96724 1.62031 1.51487 1.08174 1.03770 1.22226 0.96999 1.02522 0.89352 1.19769 0.87017 0.93450 0.93016 1.21116 1.16700 0.90895 1.25661 0.91954 1.24985 0.95348 0.99071 0.95263 1.69949 1.20385 1.34868 1.28696 0.86560 0.77784 0.85002 0.78046 1.20138 1.21408 1.20373 1.20877 0.93685 0.99421 0.97299 0.90499 0.90447 0.88084 0.89175 0.89151 0.86053 0.85748 0.85602 0.90144 0.94584 0.83134 0.90268 0.95367 0.79729 0.94902 0.92391 0.93840 0.90466 0.97436 0.95000 0.99425 0.92938 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.66 10.76 101.05 1.09 0.43 16 2 S -0.26 -2.14 22.36 -107.50 -2.40 -4.54 16 3 C -0.04 -0.31 6.07 36.01 0.22 -0.10 16 4 C -0.08 -0.75 5.14 -104.62 -0.54 -1.29 16 5 C -0.10 -0.93 9.70 -39.58 -0.38 -1.31 16 6 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 7 C -0.09 -0.91 9.70 -39.58 -0.38 -1.30 16 8 C -0.08 -0.83 5.39 -104.62 -0.56 -1.39 16 9 C 0.10 1.01 5.81 -4.98 -0.03 0.98 16 10 N -0.68 -8.37 6.49 -115.06 -0.75 -9.11 16 11 C 0.03 0.37 5.39 -3.82 -0.02 0.35 16 12 C 0.12 1.90 3.30 -26.73 -0.09 1.81 16 13 H 0.11 2.22 6.79 -51.93 -0.35 1.87 16 14 O -0.54 -8.89 12.55 -35.23 -0.44 -9.34 16 15 C 0.03 0.46 4.65 -3.82 -0.02 0.44 16 16 N -0.53 -11.54 4.56 -244.36 -1.11 -12.65 16 17 C 0.04 0.74 9.37 60.06 0.56 1.30 16 18 C 0.19 5.10 4.55 -4.97 -0.02 5.08 16 19 C -0.51 -14.53 8.39 -34.44 -0.29 -14.81 16 20 H 0.06 1.78 7.17 -52.49 -0.38 1.40 16 21 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 22 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 23 Si 0.90 22.11 29.54 -169.99 -5.02 17.08 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C -0.09 -0.91 9.36 -39.58 -0.37 -1.28 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.10 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 32 H 0.09 0.62 8.08 -51.93 -0.42 0.20 16 33 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 37 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 38 H 0.35 4.38 8.11 -39.29 -0.32 4.06 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.36 4.41 9.04 45.56 0.41 4.82 16 42 H 0.03 0.58 8.00 -51.93 -0.42 0.16 16 43 H 0.06 0.85 7.94 -51.93 -0.41 0.44 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 1.64 6.67 -51.93 -0.35 1.30 16 46 H 0.01 0.14 8.13 -51.93 -0.42 -0.29 16 47 H 0.03 0.91 6.63 -51.93 -0.34 0.56 16 48 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 49 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 50 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 421.51 15.07 6.35 6.35 Total: -1.00 -32.64 421.51 -12.01 -44.65 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -8.04 Total: 5.13 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -1.33 Total: -11.15 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -1.12 Total: -48.19 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.44 Total: -9.34 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: -2.14 SS G_CDS: -2.40 Total: -4.54 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -32.64 -12.01 -44.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572028956.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.573 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds