Wall clock time and date at job start Tue Mar 31 2020 21:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81398 * 102.99699 * 2 1 4 4 C 1.50703 * 109.46737 * 180.02562 * 3 2 1 5 5 C 1.38261 * 119.99879 * 270.01668 * 4 3 2 6 6 C 1.38212 * 119.99745 * 179.97438 * 5 4 3 7 7 C 1.38255 * 120.00049 * 0.09547 * 6 5 4 8 8 C 1.38212 * 120.00393 * 359.86133 * 7 6 5 9 9 C 1.50701 * 120.00210 * 180.36542 * 8 7 6 10 10 N 1.46895 * 109.47121 * 269.72351 * 9 8 7 11 11 C 1.46902 * 110.99758 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.46804 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.46914 * 60.00372 * 12 11 10 14 14 O 1.42894 * 109.47405 * 300.00287 * 12 11 10 15 15 C 1.53003 * 109.46862 * 180.02562 * 12 11 10 16 16 N 1.46902 * 109.47099 * 180.46386 * 15 12 11 17 17 C 1.46895 * 110.99784 * 199.84846 * 16 15 12 18 18 C 1.46906 * 110.99663 * 75.89616 * 16 15 12 19 19 C 1.50703 * 109.46528 * 189.99900 * 18 16 15 20 20 H 1.07998 * 120.00180 * 0.02562 * 19 18 16 21 21 C 1.37878 * 119.99627 * 180.02562 * 19 18 16 22 22 N 1.31513 * 120.00174 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99726 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47114 * 60.00240 * 23 21 19 25 25 H 1.48504 * 109.46989 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47312 * 299.99703 * 23 21 19 27 27 C 1.38209 * 119.99964 * 90.00465 * 4 3 2 28 28 H 1.08990 * 109.47155 * 299.99699 * 1 2 3 29 29 H 1.08998 * 109.47493 * 60.00525 * 1 2 3 30 30 H 1.09001 * 109.46896 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47281 * 60.00246 * 3 2 1 32 32 H 1.08995 * 109.47305 * 299.99678 * 3 2 1 33 33 H 1.07996 * 119.99625 * 0.02562 * 5 4 3 34 34 H 1.08001 * 120.00069 * 180.02562 * 6 5 4 35 35 H 1.08000 * 119.99576 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.46819 * 29.72583 * 9 8 7 37 37 H 1.08999 * 109.46432 * 149.72542 * 9 8 7 38 38 H 1.00897 * 111.00803 * 303.95608 * 10 9 8 39 39 H 1.08998 * 109.47331 * 300.00003 * 11 10 9 40 40 H 1.08998 * 109.46730 * 60.00546 * 11 10 9 41 41 H 0.96703 * 113.99833 * 300.00028 * 14 12 11 42 42 H 1.09004 * 109.46829 * 300.46266 * 15 12 11 43 43 H 1.08997 * 109.47005 * 60.46111 * 15 12 11 44 44 H 1.09003 * 109.46954 * 64.82253 * 17 16 15 45 45 H 1.09004 * 109.46621 * 184.81950 * 17 16 15 46 46 H 1.09001 * 109.47564 * 304.82270 * 17 16 15 47 47 H 1.08993 * 109.47226 * 310.00089 * 18 16 15 48 48 H 1.09003 * 109.47111 * 70.00046 * 18 16 15 49 49 H 0.97003 * 119.99937 * 180.02562 * 22 21 19 50 50 H 1.07996 * 120.00264 * 359.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9373 -0.0006 5 6 4.4069 2.0148 1.1965 6 6 5.7802 2.1700 1.1959 7 6 6.4664 2.2498 -0.0018 8 6 5.7793 2.1715 -1.1985 9 6 6.5282 2.2502 -2.5039 10 7 6.6149 3.6519 -2.9348 11 6 7.3408 3.7675 -4.2068 12 6 7.4109 5.2385 -4.6219 13 1 7.9323 5.8086 -3.8529 14 8 6.0871 5.7525 -4.7805 15 6 8.1664 5.3589 -5.9470 16 7 8.2434 6.7723 -6.3400 17 6 8.5215 6.9048 -7.7763 18 6 9.2481 7.4868 -5.5411 19 6 9.1303 8.9678 -5.7939 20 1 8.3835 9.3409 -6.4791 21 6 9.9758 9.8464 -5.1504 22 7 10.8855 9.3920 -4.3164 23 14 9.8293 11.6821 -5.4632 24 1 8.4716 12.1432 -5.0772 25 1 10.8450 12.4045 -4.6557 26 1 10.0547 11.9582 -6.9048 27 6 4.4055 2.0154 -1.1979 28 1 -0.3633 0.5137 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8031 2.2371 0.8900 32 1 1.8031 2.2371 -0.8900 33 1 3.8707 1.9531 2.1319 34 1 6.3173 2.2301 2.1309 35 1 7.5395 2.3715 -0.0022 36 1 7.5325 1.8480 -2.3714 37 1 6.0010 1.6694 -3.2607 38 1 5.6978 4.0669 -3.0025 39 1 8.3507 3.3760 -4.0857 40 1 6.8196 3.1971 -4.9756 41 1 5.5639 5.2915 -5.4505 42 1 9.1736 4.9593 -5.8286 43 1 7.6402 4.7956 -6.7176 44 1 7.6844 6.5028 -8.3471 45 1 8.6582 7.9575 -8.0242 46 1 9.4282 6.3526 -8.0234 47 1 9.0820 7.2844 -4.4831 48 1 10.2449 7.1481 -5.8236 49 1 11.4802 10.0101 -3.8634 50 1 3.8686 1.9543 -2.1329 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572028956.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:25 Heat of formation + Delta-G solvation = -49.957369 kcal Electronic energy + Delta-G solvation = -26002.611909 eV Core-core repulsion = 22347.547686 eV Total energy + Delta-G solvation = -3655.064223 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.48378 -39.51328 -37.49878 -36.22558 -34.59596 -33.82492 -32.51027 -30.80023 -29.86695 -29.30166 -28.02051 -27.47671 -25.92009 -24.66648 -22.98898 -22.75045 -21.83321 -21.48080 -18.60742 -17.87958 -17.36517 -17.23770 -17.02683 -16.67448 -16.44760 -16.35470 -15.88771 -15.78364 -15.46577 -15.22363 -14.96569 -14.83548 -14.61968 -14.43620 -14.17620 -13.95250 -13.83281 -13.60230 -13.51938 -13.22997 -13.12845 -12.96658 -12.83172 -12.72309 -12.57114 -12.51780 -12.29461 -12.13916 -11.93369 -11.91975 -11.50791 -11.33116 -11.06324 -10.76687 -10.59549 -9.79702 -9.57115 -9.30481 -8.93574 -8.70517 -8.19235 -6.28865 0.05680 0.43168 1.05420 1.40148 1.44377 1.51920 1.67323 2.41017 2.77002 3.10388 3.14252 3.51694 3.64240 3.72477 3.76791 3.91837 4.03193 4.16450 4.18822 4.23093 4.34111 4.35256 4.35853 4.36309 4.46280 4.54670 4.56160 4.59233 4.63522 4.67113 4.74600 4.78930 4.81089 4.89414 5.06840 5.09376 5.14053 5.15192 5.26755 5.31705 5.51843 5.57816 5.65369 5.68431 5.99384 6.07468 6.09883 6.36161 6.43196 6.66238 6.86871 7.06642 7.40243 8.91670 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015915 B = 0.001796 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.948250 B =15583.303489 C =15986.234404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.307 6.307 3 C -0.032 4.032 4 C -0.086 4.086 5 C -0.108 4.108 6 C -0.127 4.127 7 C -0.107 4.107 8 C -0.091 4.091 9 C 0.103 3.897 10 N -0.692 5.692 11 C 0.044 3.956 12 C 0.126 3.874 13 H 0.061 0.939 14 O -0.558 6.558 15 C 0.027 3.973 16 N -0.541 5.541 17 C 0.039 3.961 18 C 0.210 3.790 19 C -0.524 4.524 20 H 0.061 0.939 21 C -0.001 4.001 22 N -0.935 5.935 23 Si 0.970 3.030 24 H -0.270 1.270 25 H -0.282 1.282 26 H -0.265 1.265 27 C -0.101 4.101 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.050 0.950 38 H 0.348 0.652 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.378 0.622 42 H 0.028 0.972 43 H 0.097 0.903 44 H 0.082 0.918 45 H 0.054 0.946 46 H 0.012 0.988 47 H 0.002 0.998 48 H -0.042 1.042 49 H 0.264 0.736 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.825 -21.711 7.400 29.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.080 6.080 3 C -0.179 4.179 4 C -0.087 4.087 5 C -0.128 4.128 6 C -0.145 4.145 7 C -0.126 4.126 8 C -0.091 4.091 9 C -0.025 4.025 10 N -0.325 5.325 11 C -0.086 4.086 12 C 0.066 3.934 13 H 0.079 0.921 14 O -0.363 6.363 15 C -0.103 4.103 16 N -0.265 5.265 17 C -0.109 4.109 18 C 0.084 3.916 19 C -0.562 4.562 20 H 0.080 0.920 21 C -0.199 4.199 22 N -0.575 5.575 23 Si 0.794 3.206 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.190 1.190 27 C -0.121 4.121 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.127 0.873 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.144 0.856 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.167 0.833 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.226 0.774 42 H 0.046 0.954 43 H 0.115 0.885 44 H 0.100 0.900 45 H 0.073 0.927 46 H 0.030 0.970 47 H 0.020 0.980 48 H -0.024 1.024 49 H 0.072 0.928 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.777 -21.800 8.429 29.365 hybrid contribution -0.238 0.940 -1.039 1.421 sum -18.015 -20.860 7.389 28.535 Atomic orbital electron populations 1.23451 0.91422 1.07394 1.05930 1.87376 1.10339 1.12070 1.98183 1.22264 0.94997 0.93900 1.06711 1.19325 0.93802 1.01821 0.93768 1.21254 0.94526 0.99058 0.97941 1.21388 0.94547 0.99922 0.98654 1.21283 1.00619 0.98420 0.92286 1.19851 0.93719 1.00342 0.95237 1.20862 0.99947 0.88909 0.92754 1.60309 1.24599 1.16504 1.31081 1.22481 0.99976 0.95500 0.90651 1.21681 0.83424 0.93069 0.95214 0.92094 1.86656 1.24770 1.62605 1.62316 1.22787 0.99160 0.89909 0.98399 1.61940 1.49367 1.10745 1.04481 1.22249 0.98878 1.01504 0.88300 1.19365 0.86779 0.93366 0.92137 1.21459 1.16775 0.92272 1.25732 0.92047 1.25937 0.94832 1.04277 0.94832 1.70084 1.21172 1.36666 1.29581 0.85436 0.77940 0.78699 0.78535 1.19554 1.20779 1.19009 1.21029 0.93557 0.99516 0.98000 0.89386 0.89566 0.87262 0.87960 0.88398 0.84445 0.84168 0.85645 0.90116 0.93220 0.83307 0.90294 0.92471 0.77386 0.95421 0.88469 0.89981 0.92735 0.96983 0.97982 1.02405 0.92751 0.85358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.76 113.37 1.22 0.26 16 2 S -0.31 -4.80 22.36 -56.49 -1.26 -6.06 16 3 C -0.03 -0.44 6.07 71.24 0.43 0.00 16 4 C -0.09 -1.53 5.14 -19.86 -0.10 -1.63 16 5 C -0.11 -1.89 9.70 22.27 0.22 -1.67 16 6 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 7 C -0.11 -2.22 9.70 22.27 0.22 -2.01 16 8 C -0.09 -1.89 5.39 -19.86 -0.11 -1.99 16 9 C 0.10 2.05 5.81 85.56 0.50 2.54 16 10 N -0.69 -16.77 6.49 -517.94 -3.36 -20.13 16 11 C 0.04 1.04 5.39 86.30 0.47 1.51 16 12 C 0.13 4.11 3.30 30.60 0.10 4.21 16 13 H 0.06 2.60 6.79 -2.38 -0.02 2.59 16 14 O -0.56 -17.94 12.55 -148.98 -1.87 -19.81 16 15 C 0.03 0.89 4.65 86.30 0.40 1.29 16 16 N -0.54 -23.55 4.56 -927.02 -4.22 -27.78 16 17 C 0.04 1.48 9.37 127.69 1.20 2.67 16 18 C 0.21 11.56 4.55 85.56 0.39 11.95 16 19 C -0.52 -30.81 8.39 25.60 0.21 -30.60 16 20 H 0.06 3.54 7.17 -2.91 -0.02 3.52 16 21 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 22 N -0.93 -57.91 13.29 21.45 0.28 -57.63 16 23 Si 0.97 45.63 29.54 68.60 2.03 47.65 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 27 C -0.10 -1.92 9.36 22.27 0.21 -1.71 16 28 H 0.09 0.56 8.14 -2.40 -0.02 0.54 16 29 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 1.13 8.09 -2.39 -0.02 1.11 16 32 H 0.10 1.18 8.08 -2.39 -0.02 1.16 16 33 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.13 2.50 8.06 -2.91 -0.02 2.47 16 36 H 0.08 1.57 8.08 -2.39 -0.02 1.55 16 37 H 0.05 0.85 8.09 -2.39 -0.02 0.83 16 38 H 0.35 8.51 8.11 -89.70 -0.73 7.78 16 39 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.38 8.45 9.04 -74.05 -0.67 7.78 16 42 H 0.03 0.97 8.00 -2.38 -0.02 0.95 16 43 H 0.10 2.53 7.94 -2.39 -0.02 2.51 16 44 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 45 H 0.05 2.30 6.67 -2.38 -0.02 2.28 16 46 H 0.01 0.43 8.13 -2.39 -0.02 0.41 16 47 H 0.00 0.13 6.63 -2.39 -0.02 0.11 16 48 H -0.04 -2.48 8.12 -2.39 -0.02 -2.50 16 49 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 50 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -72.56 421.51 -2.85 -75.41 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: -0.48 Total: 25.22 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: 6.03 Total: -16.88 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -7.30 Total: -105.54 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -1.87 Total: -19.81 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Atomic # 16 Polarization: -4.80 SS G_CDS: -1.26 Total: -6.06 kcal Total: -72.56 -2.85 -75.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572028956.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.456 kcal (2) G-P(sol) polarization free energy of solvation -72.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds