Wall clock time and date at job start Tue Mar 31 2020 21:43:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81399 * 1
3 3 C 1.81398 * 102.99984 * 2 1
4 4 C 1.50702 * 109.47275 * 180.02562 * 3 2 1
5 5 C 1.38264 * 119.99779 * 270.02590 * 4 3 2
6 6 C 1.38211 * 119.99583 * 179.97438 * 5 4 3
7 7 C 1.38261 * 120.00084 * 359.81104 * 6 5 4
8 8 C 1.38216 * 119.99966 * 0.42178 * 7 6 5
9 9 C 1.50703 * 119.99851 * 179.81143 * 8 7 6
10 10 N 1.46902 * 109.46547 * 269.72236 * 9 8 7
11 11 C 1.46904 * 110.99534 * 180.02562 * 10 9 8
12 12 C 1.53000 * 109.47085 * 180.02562 * 11 10 9
13 13 H 1.09003 * 109.47253 * 305.00344 * 12 11 10
14 14 O 1.42900 * 109.47194 * 64.99751 * 12 11 10
15 15 C 1.52998 * 109.47107 * 184.99848 * 12 11 10
16 16 N 1.46899 * 109.46858 * 175.04575 * 15 12 11
17 17 C 1.46903 * 110.99991 * 163.94840 * 16 15 12
18 18 C 1.46902 * 111.00138 * 287.89426 * 16 15 12
19 19 C 1.50702 * 109.47206 * 170.00004 * 18 16 15
20 20 H 1.07990 * 119.99891 * 0.02562 * 19 18 16
21 21 C 1.37878 * 119.99588 * 179.97438 * 19 18 16
22 22 N 1.31512 * 120.00136 * 0.02562 * 21 19 18
23 23 Si 1.86805 * 119.99737 * 180.02562 * 21 19 18
24 24 H 1.48494 * 109.47193 * 60.00363 * 23 21 19
25 25 H 1.48498 * 109.46985 * 180.02562 * 23 21 19
26 26 H 1.48499 * 109.46869 * 300.00247 * 23 21 19
27 27 C 1.38205 * 119.99980 * 90.00298 * 4 3 2
28 28 H 1.08998 * 109.47460 * 59.99136 * 1 2 3
29 29 H 1.09001 * 109.47418 * 180.02562 * 1 2 3
30 30 H 1.09006 * 109.46536 * 299.99453 * 1 2 3
31 31 H 1.09001 * 109.46963 * 60.00536 * 3 2 1
32 32 H 1.09003 * 109.47570 * 300.00606 * 3 2 1
33 33 H 1.07993 * 120.00029 * 359.97438 * 5 4 3
34 34 H 1.07997 * 120.00018 * 180.02562 * 6 5 4
35 35 H 1.08004 * 119.99917 * 180.23224 * 7 6 5
36 36 H 1.08997 * 109.46893 * 149.72367 * 9 8 7
37 37 H 1.08997 * 109.46991 * 29.72252 * 9 8 7
38 38 H 1.00901 * 111.00190 * 56.04996 * 10 9 8
39 39 H 1.08996 * 109.47355 * 59.99871 * 11 10 9
40 40 H 1.09001 * 109.46826 * 299.99768 * 11 10 9
41 41 H 0.96698 * 114.00266 * 60.00042 * 14 12 11
42 42 H 1.08997 * 109.47560 * 55.04389 * 15 12 11
43 43 H 1.08998 * 109.46907 * 295.04026 * 15 12 11
44 44 H 1.08998 * 109.47439 * 189.27288 * 17 16 15
45 45 H 1.08994 * 109.47470 * 69.26701 * 17 16 15
46 46 H 1.09004 * 109.46549 * 309.26905 * 17 16 15
47 47 H 1.08997 * 109.47475 * 290.00611 * 18 16 15
48 48 H 1.09000 * 109.46537 * 50.00068 * 18 16 15
49 49 H 0.97003 * 119.99947 * 179.97438 * 22 21 19
50 50 H 1.07998 * 120.00203 * 359.97438 * 27 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2220 1.7675 0.0000
4 6 3.7195 1.9374 -0.0006
5 6 4.4069 2.0147 1.1965
6 6 5.7803 2.1699 1.1959
7 6 6.4671 2.2441 -0.0018
8 6 5.7793 2.1716 -1.1985
9 6 6.5274 2.2567 -2.5039
10 7 6.6139 3.6605 -2.9280
11 6 7.3380 3.7823 -4.2004
12 6 7.4080 5.2553 -4.6083
13 1 6.4013 5.6720 -4.6395
14 8 8.1926 5.9765 -3.6563
15 6 8.0512 5.3713 -5.9917
16 7 8.0110 6.7714 -6.4344
17 6 8.9344 6.9960 -7.5546
18 6 6.6434 7.1718 -6.7913
19 6 6.5954 8.6632 -7.0020
20 1 7.4912 9.2544 -6.8831
21 6 5.4079 9.2726 -7.3476
22 7 4.3171 8.5525 -7.4928
23 14 5.3484 11.1213 -7.6095
24 1 6.2764 11.4959 -8.7066
25 1 3.9659 11.5259 -7.9701
26 1 5.7556 11.8116 -6.3593
27 6 4.4055 2.0155 -1.1978
28 1 -0.3634 0.5139 -0.8899
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3632 0.5138 0.8901
31 1 1.8032 2.2371 0.8900
32 1 1.8030 2.2372 -0.8899
33 1 3.8708 1.9537 2.1320
34 1 6.3173 2.2299 2.1309
35 1 7.5407 2.3616 -0.0023
36 1 5.9999 1.6796 -3.2633
37 1 7.5318 1.8538 -2.3739
38 1 7.0417 4.2288 -2.2123
39 1 6.8158 3.2159 -4.9713
40 1 8.3481 3.3899 -4.0826
41 1 9.1025 5.6593 -3.5754
42 1 7.5033 4.7503 -6.7004
43 1 9.0871 5.0362 -5.9400
44 1 9.0092 8.0648 -7.7553
45 1 8.5605 6.4851 -8.4418
46 1 9.9189 6.6048 -7.2979
47 1 6.3443 6.6653 -7.7089
48 1 5.9625 6.8965 -5.9859
49 1 3.4815 8.9813 -7.7356
50 1 3.8687 1.9543 -2.1329
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000572028966.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:43:30
Heat of formation + Delta-G solvation = -26.936786 kcal
Electronic energy + Delta-G solvation = -26069.537316 eV
Core-core repulsion = 22415.471340 eV
Total energy + Delta-G solvation = -3654.065976 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 338.177 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-39.72784 -38.19280 -36.09107 -35.06870 -33.04821 -32.44819 -31.63822 -29.54223
-29.35059 -27.36269 -27.22972 -26.35399 -24.44178 -23.11617 -22.31743 -21.50406
-20.78320 -19.98545 -17.07694 -16.60558 -16.35904 -16.21699 -16.03062 -15.59177
-15.23874 -14.89618 -14.71115 -14.53536 -14.36777 -14.22690 -14.03285 -13.77744
-13.68655 -13.28224 -13.19852 -12.94245 -12.85801 -12.46756 -12.35441 -12.13911
-11.93314 -11.81051 -11.35599 -11.26563 -11.15462 -11.08459 -10.91225 -10.69287
-10.61611 -10.44726 -10.31607 -9.71428 -9.60701 -9.12524 -8.97669 -8.86784
-8.40491 -8.36699 -8.01388 -7.17372 -5.97266 -3.97733 0.75068 1.20561
1.68797 2.26434 3.37487 3.41056 3.44678 3.56575 4.18666 4.32314
4.45931 4.48155 4.69780 4.76369 4.77623 4.78841 4.86497 4.91966
4.95511 5.10325 5.22268 5.23644 5.32483 5.33508 5.37396 5.41154
5.46399 5.48447 5.60754 5.74666 5.81814 5.82682 5.87220 6.06407
6.10194 6.24603 6.31707 6.37100 6.43370 6.56920 6.73104 6.77717
6.96108 7.32353 7.35495 7.39067 7.84237 8.08338 8.15186 8.24942
8.60118 9.09041 9.65798 11.13791
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.011087 B = 0.002054 C = 0.001850
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2524.925907 B =13626.114417 C =15134.760407
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 S -0.257 6.257
3 C -0.043 4.043
4 C -0.079 4.079
5 C -0.101 4.101
6 C -0.121 4.121
7 C -0.106 4.106
8 C -0.079 4.079
9 C 0.098 3.902
10 N -0.678 5.678
11 C 0.030 3.970
12 C 0.114 3.886
13 H 0.114 0.886
14 O -0.542 6.542
15 C 0.027 3.973
16 N -0.532 5.532
17 C 0.041 3.959
18 C 0.192 3.808
19 C -0.504 4.504
20 H 0.062 0.938
21 C 0.054 3.946
22 N -0.900 5.900
23 Si 0.898 3.102
24 H -0.278 1.278
25 H -0.288 1.288
26 H -0.276 1.276
27 C -0.075 4.075
28 H 0.078 0.922
29 H 0.100 0.900
30 H 0.076 0.924
31 H 0.090 0.910
32 H 0.093 0.907
33 H 0.121 0.879
34 H 0.123 0.877
35 H 0.120 0.880
36 H 0.080 0.920
37 H 0.036 0.964
38 H 0.349 0.651
39 H 0.079 0.921
40 H 0.028 0.972
41 H 0.358 0.642
42 H 0.031 0.969
43 H 0.059 0.941
44 H 0.072 0.928
45 H 0.011 0.989
46 H 0.041 0.959
47 H -0.012 1.012
48 H 0.033 0.967
49 H 0.261 0.739
50 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.142 -19.157 16.488 25.276
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.295 4.295
2 S -0.029 6.029
3 C -0.190 4.190
4 C -0.080 4.080
5 C -0.121 4.121
6 C -0.139 4.139
7 C -0.126 4.126
8 C -0.079 4.079
9 C -0.031 4.031
10 N -0.310 5.310
11 C -0.100 4.100
12 C 0.054 3.946
13 H 0.132 0.868
14 O -0.345 6.345
15 C -0.103 4.103
16 N -0.256 5.256
17 C -0.108 4.108
18 C 0.067 3.933
19 C -0.543 4.543
20 H 0.080 0.920
21 C -0.147 4.147
22 N -0.539 5.539
23 Si 0.726 3.274
24 H -0.204 1.204
25 H -0.214 1.214
26 H -0.201 1.201
27 C -0.095 4.095
28 H 0.097 0.903
29 H 0.119 0.881
30 H 0.095 0.905
31 H 0.108 0.892
32 H 0.111 0.889
33 H 0.139 0.861
34 H 0.141 0.859
35 H 0.138 0.862
36 H 0.098 0.902
37 H 0.054 0.946
38 H 0.169 0.831
39 H 0.097 0.903
40 H 0.046 0.954
41 H 0.203 0.797
42 H 0.049 0.951
43 H 0.077 0.923
44 H 0.090 0.910
45 H 0.030 0.970
46 H 0.060 0.940
47 H 0.006 0.994
48 H 0.051 0.949
49 H 0.071 0.929
50 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -0.479 -19.401 16.582 25.526
hybrid contribution 0.058 0.956 -0.724 1.201
sum -0.421 -18.445 15.858 24.328
Atomic orbital electron populations
1.23414 0.94525 1.06498 1.05016 1.87162 1.06854 1.10853 1.98050
1.22314 0.96083 0.94665 1.05924 1.19141 0.92847 1.02133 0.93890
1.20984 0.94415 0.99506 0.97222 1.21059 0.94153 1.00666 0.98008
1.21095 0.99824 0.99559 0.92110 1.19751 0.93820 0.99811 0.94566
1.20886 0.97773 0.90777 0.93647 1.60383 1.57282 1.07508 1.05807
1.22707 0.95942 0.98762 0.92560 1.22030 0.96888 0.88650 0.87013
0.86796 1.86711 1.25534 1.60845 1.61412 1.22665 0.99239 0.92065
0.96293 1.62059 1.11437 1.16352 1.35746 1.22184 0.94511 1.02254
0.91806 1.19791 0.82783 0.96166 0.94543 1.21110 0.95142 0.92223
1.45827 0.91988 1.24984 0.95601 0.98363 0.95721 1.69948 0.99835
1.35556 1.48605 0.86565 0.76802 0.85437 0.78627 1.20369 1.21401
1.20132 1.20908 0.93581 0.97568 0.97444 0.90334 0.88100 0.90524
0.89187 0.88889 0.86052 0.85890 0.86184 0.90171 0.94559 0.83141
0.90272 0.95353 0.79679 0.95081 0.92282 0.90966 0.97018 0.94004
0.99394 0.94907 0.92942 0.85607
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -0.78 10.76 101.05 1.09 0.31 16
2 S -0.26 -2.36 22.36 -107.50 -2.40 -4.76 16
3 C -0.04 -0.37 6.07 36.01 0.22 -0.15 16
4 C -0.08 -0.80 5.14 -104.62 -0.54 -1.33 16
5 C -0.10 -0.95 9.70 -39.58 -0.38 -1.33 16
6 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16
7 C -0.11 -1.03 9.70 -39.58 -0.38 -1.41 16
8 C -0.08 -0.85 5.39 -104.62 -0.56 -1.41 16
9 C 0.10 1.03 5.81 -4.97 -0.03 1.00 16
10 N -0.68 -8.52 6.49 -115.06 -0.75 -9.26 16
11 C 0.03 0.38 5.36 -3.82 -0.02 0.36 16
12 C 0.11 1.87 3.26 -26.73 -0.09 1.78 16
13 H 0.11 2.33 6.46 -51.93 -0.34 1.99 16
14 O -0.54 -8.90 12.81 -35.23 -0.45 -9.35 16
15 C 0.03 0.47 4.61 -3.83 -0.02 0.45 16
16 N -0.53 -11.59 4.66 -244.37 -1.14 -12.73 16
17 C 0.04 0.81 9.32 60.07 0.56 1.37 16
18 C 0.19 5.09 4.57 -4.97 -0.02 5.07 16
19 C -0.50 -14.53 8.58 -34.44 -0.30 -14.83 16
20 H 0.06 1.77 7.10 -52.49 -0.37 1.40 16
21 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16
22 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16
23 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16
24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16
25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
26 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16
27 C -0.07 -0.82 9.36 -39.59 -0.37 -1.19 16
28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16
29 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16
30 H 0.08 0.40 8.14 -51.92 -0.42 -0.03 16
31 H 0.09 0.66 8.09 -51.92 -0.42 0.24 16
32 H 0.09 0.78 8.09 -51.92 -0.42 0.36 16
33 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16
34 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16
35 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16
36 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16
37 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16
38 H 0.35 4.44 8.28 -39.29 -0.33 4.12 16
39 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16
40 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16
41 H 0.36 4.34 9.05 45.56 0.41 4.75 16
42 H 0.03 0.55 8.05 -51.93 -0.42 0.13 16
43 H 0.06 0.86 7.82 -51.93 -0.41 0.46 16
44 H 0.07 1.51 7.02 -51.93 -0.36 1.14 16
45 H 0.01 0.22 8.07 -51.93 -0.42 -0.20 16
46 H 0.04 0.68 7.88 -51.93 -0.41 0.27 16
47 H -0.01 -0.33 8.07 -51.93 -0.42 -0.75 16
48 H 0.03 0.93 6.34 -51.93 -0.33 0.60 16
49 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16
50 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16
LS Contribution 421.31 15.07 6.35 6.35
Total: -1.00 -32.72 421.31 -12.02 -44.74
By element:
Atomic # 1 Polarization: 13.71 SS G_CDS: -8.01 Total: 5.70 kcal
Atomic # 6 Polarization: -9.98 SS G_CDS: -1.34 Total: -11.32 kcal
Atomic # 7 Polarization: -47.32 SS G_CDS: -1.15 Total: -48.46 kcal
Atomic # 8 Polarization: -8.90 SS G_CDS: -0.45 Total: -9.35 kcal
Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal
Atomic # 16 Polarization: -2.36 SS G_CDS: -2.40 Total: -4.76 kcal
Total LS contribution 6.35 Total: 6.35 kcal
Total: -32.72 -12.02 -44.74 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000572028966.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.805 kcal
(2) G-P(sol) polarization free energy of solvation -32.719 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.914 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.023 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.741 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.937 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds