Wall clock time and date at job start Tue Mar 31 2020 21:43:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81399 * 1
3 3 C 1.81398 * 102.99984 * 2 1
4 4 C 1.50702 * 109.47275 * 180.02562 * 3 2 1
5 5 C 1.38264 * 119.99779 * 270.02590 * 4 3 2
6 6 C 1.38211 * 119.99583 * 179.97438 * 5 4 3
7 7 C 1.38261 * 120.00084 * 359.81104 * 6 5 4
8 8 C 1.38216 * 119.99966 * 0.42178 * 7 6 5
9 9 C 1.50703 * 119.99851 * 179.81143 * 8 7 6
10 10 N 1.46902 * 109.46547 * 269.72236 * 9 8 7
11 11 C 1.46904 * 110.99534 * 180.02562 * 10 9 8
12 12 C 1.53000 * 109.47085 * 180.02562 * 11 10 9
13 13 H 1.09003 * 109.47253 * 305.00344 * 12 11 10
14 14 O 1.42900 * 109.47194 * 64.99751 * 12 11 10
15 15 C 1.52998 * 109.47107 * 184.99848 * 12 11 10
16 16 N 1.46899 * 109.46858 * 175.04575 * 15 12 11
17 17 C 1.46903 * 110.99991 * 163.94840 * 16 15 12
18 18 C 1.46902 * 111.00138 * 287.89426 * 16 15 12
19 19 C 1.50702 * 109.47206 * 170.00004 * 18 16 15
20 20 H 1.07990 * 119.99891 * 0.02562 * 19 18 16
21 21 C 1.37878 * 119.99588 * 179.97438 * 19 18 16
22 22 N 1.31512 * 120.00136 * 0.02562 * 21 19 18
23 23 Si 1.86805 * 119.99737 * 180.02562 * 21 19 18
24 24 H 1.48494 * 109.47193 * 60.00363 * 23 21 19
25 25 H 1.48498 * 109.46985 * 180.02562 * 23 21 19
26 26 H 1.48499 * 109.46869 * 300.00247 * 23 21 19
27 27 C 1.38205 * 119.99980 * 90.00298 * 4 3 2
28 28 H 1.08998 * 109.47460 * 59.99136 * 1 2 3
29 29 H 1.09001 * 109.47418 * 180.02562 * 1 2 3
30 30 H 1.09006 * 109.46536 * 299.99453 * 1 2 3
31 31 H 1.09001 * 109.46963 * 60.00536 * 3 2 1
32 32 H 1.09003 * 109.47570 * 300.00606 * 3 2 1
33 33 H 1.07993 * 120.00029 * 359.97438 * 5 4 3
34 34 H 1.07997 * 120.00018 * 180.02562 * 6 5 4
35 35 H 1.08004 * 119.99917 * 180.23224 * 7 6 5
36 36 H 1.08997 * 109.46893 * 149.72367 * 9 8 7
37 37 H 1.08997 * 109.46991 * 29.72252 * 9 8 7
38 38 H 1.00901 * 111.00190 * 56.04996 * 10 9 8
39 39 H 1.08996 * 109.47355 * 59.99871 * 11 10 9
40 40 H 1.09001 * 109.46826 * 299.99768 * 11 10 9
41 41 H 0.96698 * 114.00266 * 60.00042 * 14 12 11
42 42 H 1.08997 * 109.47560 * 55.04389 * 15 12 11
43 43 H 1.08998 * 109.46907 * 295.04026 * 15 12 11
44 44 H 1.08998 * 109.47439 * 189.27288 * 17 16 15
45 45 H 1.08994 * 109.47470 * 69.26701 * 17 16 15
46 46 H 1.09004 * 109.46549 * 309.26905 * 17 16 15
47 47 H 1.08997 * 109.47475 * 290.00611 * 18 16 15
48 48 H 1.09000 * 109.46537 * 50.00068 * 18 16 15
49 49 H 0.97003 * 119.99947 * 179.97438 * 22 21 19
50 50 H 1.07998 * 120.00203 * 359.97438 * 27 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2220 1.7675 0.0000
4 6 3.7195 1.9374 -0.0006
5 6 4.4069 2.0147 1.1965
6 6 5.7803 2.1699 1.1959
7 6 6.4671 2.2441 -0.0018
8 6 5.7793 2.1716 -1.1985
9 6 6.5274 2.2567 -2.5039
10 7 6.6139 3.6605 -2.9280
11 6 7.3380 3.7823 -4.2004
12 6 7.4080 5.2553 -4.6083
13 1 6.4013 5.6720 -4.6395
14 8 8.1926 5.9765 -3.6563
15 6 8.0512 5.3713 -5.9917
16 7 8.0110 6.7714 -6.4344
17 6 8.9344 6.9960 -7.5546
18 6 6.6434 7.1718 -6.7913
19 6 6.5954 8.6632 -7.0020
20 1 7.4912 9.2544 -6.8831
21 6 5.4079 9.2726 -7.3476
22 7 4.3171 8.5525 -7.4928
23 14 5.3484 11.1213 -7.6095
24 1 6.2764 11.4959 -8.7066
25 1 3.9659 11.5259 -7.9701
26 1 5.7556 11.8116 -6.3593
27 6 4.4055 2.0155 -1.1978
28 1 -0.3634 0.5139 -0.8899
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3632 0.5138 0.8901
31 1 1.8032 2.2371 0.8900
32 1 1.8030 2.2372 -0.8899
33 1 3.8708 1.9537 2.1320
34 1 6.3173 2.2299 2.1309
35 1 7.5407 2.3616 -0.0023
36 1 5.9999 1.6796 -3.2633
37 1 7.5318 1.8538 -2.3739
38 1 7.0417 4.2288 -2.2123
39 1 6.8158 3.2159 -4.9713
40 1 8.3481 3.3899 -4.0826
41 1 9.1025 5.6593 -3.5754
42 1 7.5033 4.7503 -6.7004
43 1 9.0871 5.0362 -5.9400
44 1 9.0092 8.0648 -7.7553
45 1 8.5605 6.4851 -8.4418
46 1 9.9189 6.6048 -7.2979
47 1 6.3443 6.6653 -7.7089
48 1 5.9625 6.8965 -5.9859
49 1 3.4815 8.9813 -7.7356
50 1 3.8687 1.9543 -2.1329
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000572028966.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:43:29
Heat of formation + Delta-G solvation = -50.120251 kcal
Electronic energy + Delta-G solvation = -26070.542626 eV
Core-core repulsion = 22415.471340 eV
Total energy + Delta-G solvation = -3655.071286 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 338.177 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-40.48112 -39.53018 -37.49717 -36.25979 -34.60406 -33.81836 -32.50277 -30.79650
-29.88610 -29.32798 -28.03443 -27.46737 -25.90781 -24.67336 -23.05760 -22.79732
-21.81024 -21.42753 -18.61942 -17.89193 -17.38475 -17.27761 -17.02422 -16.65435
-16.45440 -16.35113 -15.92488 -15.75869 -15.43226 -15.22571 -14.91068 -14.88911
-14.72275 -14.39938 -14.22455 -13.96560 -13.85483 -13.60414 -13.50726 -13.21733
-13.11083 -12.95976 -12.88959 -12.72487 -12.58077 -12.51846 -12.31907 -12.14945
-11.99025 -11.86087 -11.49826 -11.33140 -11.09770 -10.77590 -10.59428 -9.75424
-9.61811 -9.30179 -8.94854 -8.72238 -8.19679 -6.29343 0.04648 0.44656
1.03471 1.39563 1.43814 1.51362 1.64685 2.40579 2.77178 3.10562
3.14344 3.52277 3.60903 3.70350 3.75322 3.96613 4.01522 4.16189
4.19177 4.22092 4.31648 4.33249 4.34408 4.35804 4.45437 4.51684
4.54739 4.60334 4.61976 4.66559 4.77321 4.78382 4.80449 4.87132
5.08056 5.08930 5.13119 5.13461 5.26890 5.32064 5.52507 5.58314
5.65144 5.66846 5.99500 6.07272 6.10160 6.35304 6.43280 6.65974
6.86404 7.06588 7.39883 8.91342
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.011087 B = 0.002054 C = 0.001850
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2524.925907 B =13626.114417 C =15134.760407
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 S -0.304 6.304
3 C -0.034 4.034
4 C -0.089 4.089
5 C -0.108 4.108
6 C -0.123 4.123
7 C -0.112 4.112
8 C -0.092 4.092
9 C 0.104 3.896
10 N -0.695 5.695
11 C 0.044 3.956
12 C 0.124 3.876
13 H 0.062 0.938
14 O -0.560 6.560
15 C 0.027 3.973
16 N -0.543 5.543
17 C 0.042 3.958
18 C 0.210 3.790
19 C -0.524 4.524
20 H 0.061 0.939
21 C -0.001 4.001
22 N -0.935 5.935
23 Si 0.969 3.031
24 H -0.265 1.265
25 H -0.282 1.282
26 H -0.270 1.270
27 C -0.096 4.096
28 H 0.082 0.918
29 H 0.111 0.889
30 H 0.089 0.911
31 H 0.104 0.896
32 H 0.089 0.911
33 H 0.138 0.862
34 H 0.147 0.853
35 H 0.138 0.862
36 H 0.076 0.924
37 H 0.055 0.945
38 H 0.348 0.652
39 H 0.077 0.923
40 H 0.060 0.940
41 H 0.380 0.620
42 H 0.027 0.973
43 H 0.099 0.901
44 H 0.053 0.947
45 H 0.007 0.993
46 H 0.084 0.916
47 H -0.042 1.042
48 H 0.004 0.996
49 H 0.264 0.736
50 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.632 -19.269 17.637 26.173
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.283 4.283
2 S -0.076 6.076
3 C -0.181 4.181
4 C -0.090 4.090
5 C -0.128 4.128
6 C -0.141 4.141
7 C -0.132 4.132
8 C -0.092 4.092
9 C -0.025 4.025
10 N -0.327 5.327
11 C -0.085 4.085
12 C 0.064 3.936
13 H 0.080 0.920
14 O -0.366 6.366
15 C -0.102 4.102
16 N -0.267 5.267
17 C -0.106 4.106
18 C 0.083 3.917
19 C -0.562 4.562
20 H 0.079 0.921
21 C -0.199 4.199
22 N -0.576 5.576
23 Si 0.793 3.207
24 H -0.190 1.190
25 H -0.207 1.207
26 H -0.195 1.195
27 C -0.116 4.116
28 H 0.101 0.899
29 H 0.129 0.871
30 H 0.108 0.892
31 H 0.122 0.878
32 H 0.108 0.892
33 H 0.156 0.844
34 H 0.165 0.835
35 H 0.155 0.845
36 H 0.094 0.906
37 H 0.073 0.927
38 H 0.167 0.833
39 H 0.095 0.905
40 H 0.078 0.922
41 H 0.228 0.772
42 H 0.045 0.955
43 H 0.117 0.883
44 H 0.072 0.928
45 H 0.025 0.975
46 H 0.102 0.898
47 H -0.025 1.025
48 H 0.022 0.978
49 H 0.073 0.927
50 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges 1.045 -19.534 17.733 26.403
hybrid contribution -0.395 0.932 -1.029 1.443
sum 0.649 -18.602 16.704 25.010
Atomic orbital electron populations
1.23458 0.91507 1.07454 1.05859 1.87271 1.10281 1.11886 1.98167
1.22274 0.95408 0.94022 1.06409 1.19343 0.93650 1.02033 0.93957
1.21263 0.94900 0.99052 0.97573 1.21400 0.94209 0.99628 0.98860
1.21338 1.00781 0.99170 0.91866 1.19859 0.93774 1.00435 0.95167
1.20853 0.98655 0.89428 0.93514 1.60323 1.57727 1.08898 1.05761
1.22487 0.97694 0.95776 0.92589 1.21713 0.94349 0.90658 0.86893
0.91984 1.86657 1.27185 1.61541 1.61175 1.22800 1.01687 0.89377
0.96330 1.61952 1.08845 1.19526 1.36365 1.22210 0.95896 1.01376
0.91108 1.19386 0.85246 0.95095 0.91942 1.21455 0.95323 0.93466
1.45968 0.92090 1.25938 0.95116 1.03622 0.95201 1.70084 1.00462
1.37733 1.49287 0.85445 0.77232 0.79064 0.78940 1.19022 1.20735
1.19506 1.20987 0.94132 0.98896 0.97586 0.89918 0.87069 0.89239
0.87793 0.89216 0.84383 0.83517 0.84459 0.90584 0.92739 0.83262
0.90493 0.92215 0.77224 0.95484 0.88254 0.92780 0.97464 0.89762
1.02453 0.97798 0.92739 0.86611
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.30 10.76 113.37 1.22 -0.08 16
2 S -0.30 -5.55 22.36 -56.49 -1.26 -6.81 16
3 C -0.03 -0.59 6.07 71.24 0.43 -0.15 16
4 C -0.09 -1.79 5.14 -19.87 -0.10 -1.90 16
5 C -0.11 -1.91 9.70 22.27 0.22 -1.70 16
6 C -0.12 -2.03 10.05 22.27 0.22 -1.81 16
7 C -0.11 -2.02 9.70 22.27 0.22 -1.80 16
8 C -0.09 -1.94 5.39 -19.86 -0.11 -2.05 16
9 C 0.10 2.10 5.81 85.56 0.50 2.59 16
10 N -0.69 -17.22 6.49 -517.93 -3.36 -20.58 16
11 C 0.04 1.07 5.36 86.30 0.46 1.54 16
12 C 0.12 4.07 3.26 30.59 0.10 4.17 16
13 H 0.06 2.71 6.46 -2.39 -0.02 2.69 16
14 O -0.56 -17.86 12.81 -148.98 -1.91 -19.77 16
15 C 0.03 0.91 4.61 86.30 0.40 1.31 16
16 N -0.54 -23.71 4.66 -927.06 -4.32 -28.03 16
17 C 0.04 1.62 9.32 127.69 1.19 2.81 16
18 C 0.21 11.58 4.57 85.56 0.39 11.97 16
19 C -0.52 -30.89 8.58 25.60 0.22 -30.67 16
20 H 0.06 3.53 7.10 -2.92 -0.02 3.51 16
21 C 0.00 -0.06 5.46 84.66 0.46 0.40 16
22 N -0.94 -58.12 13.29 21.45 0.28 -57.83 16
23 Si 0.97 45.71 29.54 68.60 2.03 47.74 16
24 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16
25 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16
26 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16
27 C -0.10 -2.17 9.36 22.27 0.21 -1.96 16
28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16
29 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16
30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16
31 H 0.10 1.44 8.09 -2.39 -0.02 1.42 16
32 H 0.09 1.56 8.09 -2.39 -0.02 1.54 16
33 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16
34 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16
35 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16
36 H 0.08 1.57 8.09 -2.39 -0.02 1.56 16
37 H 0.05 0.90 8.08 -2.39 -0.02 0.88 16
38 H 0.35 8.65 8.28 -89.69 -0.74 7.91 16
39 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16
40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16
41 H 0.38 8.23 9.05 -74.06 -0.67 7.56 16
42 H 0.03 0.94 8.05 -2.39 -0.02 0.92 16
43 H 0.10 2.56 7.82 -2.39 -0.02 2.54 16
44 H 0.05 2.23 7.02 -2.39 -0.02 2.22 16
45 H 0.01 0.27 8.07 -2.39 -0.02 0.25 16
46 H 0.08 2.49 7.88 -2.39 -0.02 2.47 16
47 H -0.04 -2.52 8.07 -2.39 -0.02 -2.54 16
48 H 0.00 0.24 6.34 -2.39 -0.02 0.23 16
49 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16
50 H 0.12 2.72 8.06 -2.91 -0.02 2.70 16
Total: -1.00 -73.28 421.31 -3.00 -76.28
By element:
Atomic # 1 Polarization: 26.82 SS G_CDS: -0.49 Total: 26.32 kcal
Atomic # 6 Polarization: -23.35 SS G_CDS: 6.03 Total: -17.33 kcal
Atomic # 7 Polarization: -99.04 SS G_CDS: -7.39 Total: -106.44 kcal
Atomic # 8 Polarization: -17.86 SS G_CDS: -1.91 Total: -19.77 kcal
Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal
Atomic # 16 Polarization: -5.55 SS G_CDS: -1.26 Total: -6.81 kcal
Total: -73.28 -3.00 -76.28 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000572028966.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.161 kcal
(2) G-P(sol) polarization free energy of solvation -73.277 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.116 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.004 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.281 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.120 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds