Wall clock time and date at job start Tue Mar 31 2020 21:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76207 * 102.99936 * 2 1 4 4 C 1.38975 * 120.08266 * 179.97438 * 3 2 1 5 5 C 1.38076 * 119.91947 * 180.02562 * 4 3 2 6 6 C 1.38299 * 120.08371 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.92296 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47307 * 89.99391 * 7 6 5 9 9 N 1.46905 * 109.46924 * 179.97438 * 8 7 6 10 10 C 1.46897 * 110.99692 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47003 * 180.02562 * 10 9 8 12 12 H 1.09005 * 109.47516 * 305.00132 * 11 10 9 13 13 O 1.42898 * 109.47398 * 65.00072 * 11 10 9 14 14 C 1.52997 * 109.47312 * 185.00128 * 11 10 9 15 15 N 1.46898 * 109.47357 * 178.51204 * 14 11 10 16 16 C 1.46907 * 111.00167 * 164.01286 * 15 14 11 17 17 C 1.46908 * 110.99664 * 287.96096 * 15 14 11 18 18 C 1.50699 * 109.46727 * 169.99937 * 17 15 14 19 19 H 1.07995 * 120.00637 * 0.02562 * 18 17 15 20 20 C 1.37882 * 119.99725 * 179.97438 * 18 17 15 21 21 N 1.31512 * 119.99971 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00000 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46775 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46745 * 120.00353 * 22 20 18 25 25 H 1.48494 * 109.46889 * 240.00472 * 22 20 18 26 26 C 1.38301 * 120.15805 * 0.26667 * 6 5 4 27 27 C 1.38088 * 120.08264 * 359.45541 * 26 6 5 28 28 H 1.09000 * 109.47287 * 299.99767 * 1 2 3 29 29 H 1.08994 * 109.47068 * 60.00113 * 1 2 3 30 30 H 1.08999 * 109.47048 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.03639 * 0.02562 * 4 3 2 32 32 H 1.08005 * 119.95502 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.47071 * 209.99866 * 7 6 5 34 34 H 1.09004 * 109.46859 * 329.99893 * 7 6 5 35 35 H 1.08998 * 109.47443 * 300.00247 * 8 7 6 36 36 H 1.09004 * 109.46751 * 60.00436 * 8 7 6 37 37 H 1.00904 * 110.99767 * 56.05059 * 9 8 7 38 38 H 1.09001 * 109.47457 * 300.00234 * 10 9 8 39 39 H 1.09004 * 109.47010 * 60.00269 * 10 9 8 40 40 H 0.96700 * 113.99632 * 59.99604 * 13 11 10 41 41 H 1.09002 * 109.47137 * 298.50991 * 14 11 10 42 42 H 1.09005 * 109.47173 * 58.50938 * 14 11 10 43 43 H 1.08996 * 109.47116 * 65.47865 * 16 15 14 44 44 H 1.08998 * 109.46772 * 185.48575 * 16 15 14 45 45 H 1.08997 * 109.46511 * 305.47999 * 16 15 14 46 46 H 1.08999 * 109.47199 * 289.99926 * 17 15 14 47 47 H 1.08999 * 109.46975 * 50.00558 * 17 15 14 48 48 H 0.97005 * 119.99969 * 180.02562 * 21 20 18 49 49 H 1.08003 * 119.95947 * 179.72866 * 26 6 5 50 50 H 1.08001 * 120.04072 * 180.27044 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5388 2.1252 0.0005 5 6 3.8455 3.4714 0.0011 6 6 2.8328 4.4132 0.0016 7 6 3.1717 5.8816 0.0028 8 6 3.2868 6.3796 -1.4393 9 7 3.6166 7.8112 -1.4381 10 6 3.7347 8.3253 -2.8091 11 6 4.0787 9.8155 -2.7670 12 1 3.3367 10.3429 -2.1675 13 8 5.3722 9.9896 -2.1852 14 6 4.0792 10.3791 -4.1894 15 7 4.3744 11.8175 -4.1461 16 6 4.7561 12.3169 -5.4739 17 6 3.2354 12.5726 -3.6071 18 6 3.6545 13.9967 -3.3477 19 1 4.6656 14.3097 -3.5621 20 6 2.7467 14.9004 -2.8375 21 7 1.5152 14.5195 -2.5768 22 14 3.2663 16.6656 -2.5152 23 1 4.6931 16.8376 -2.8892 24 1 2.4281 17.5843 -3.3267 25 1 3.0907 16.9780 -1.0742 26 6 1.5096 4.0107 0.0072 27 6 1.1952 2.6661 0.0009 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 4.3302 1.3903 0.0005 32 1 4.8777 3.7893 0.0019 33 1 2.3861 6.4353 0.5169 34 1 4.1205 6.0350 0.5169 35 1 4.0723 5.8258 -1.9534 36 1 2.3380 6.2262 -1.9535 37 1 4.4590 7.9877 -0.9115 38 1 4.5235 7.7853 -3.3329 39 1 2.7889 8.1849 -3.3325 40 1 6.0833 9.5460 -2.6676 41 1 4.8395 9.8699 -4.7817 42 1 3.1003 10.2226 -4.6426 43 1 3.9049 12.2383 -6.1501 44 1 5.0629 13.3598 -5.3953 45 1 5.5839 11.7229 -5.8612 46 1 2.4175 12.5600 -4.3275 47 1 2.9051 12.1155 -2.6743 48 1 0.8764 15.1554 -2.2182 49 1 0.7213 4.7489 0.0120 50 1 0.1617 2.3525 0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577603411.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:45 Heat of formation + Delta-G solvation = -29.014086 kcal Electronic energy + Delta-G solvation = -25703.793680 eV Core-core repulsion = 22049.637625 eV Total energy + Delta-G solvation = -3654.156054 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.67074 -38.24803 -36.29730 -35.20725 -33.08706 -32.44362 -31.56672 -30.16158 -29.36344 -28.10424 -27.23070 -25.38015 -23.61694 -23.00827 -22.71128 -21.63678 -21.11631 -19.98386 -18.13532 -16.69021 -16.32653 -16.25726 -15.92481 -15.70490 -15.17117 -15.00202 -14.73865 -14.56635 -14.37641 -14.33087 -14.09091 -13.75588 -13.66041 -13.41402 -13.32633 -13.08062 -12.79736 -12.43234 -12.36364 -11.93841 -11.80462 -11.70405 -11.51423 -11.35804 -11.13468 -11.10146 -10.90853 -10.67672 -10.65973 -10.59358 -10.31643 -9.92014 -9.71459 -9.55128 -9.34659 -9.08604 -8.44921 -8.37827 -7.77314 -7.17570 -5.97635 -3.97914 0.81511 1.01414 1.09271 1.96011 3.29233 3.34833 3.41990 3.47296 3.98200 4.41264 4.47130 4.55325 4.55656 4.55766 4.65873 4.78850 4.86256 4.97841 5.02375 5.05590 5.11998 5.20346 5.29936 5.33726 5.37194 5.43608 5.46687 5.59064 5.60619 5.72516 5.78546 5.82865 5.88725 5.89591 5.97333 6.06571 6.11117 6.31455 6.35931 6.54462 6.56540 6.73450 6.96113 7.32766 7.35578 7.38900 7.84516 8.08864 8.15380 8.24939 8.60089 9.09483 9.65763 11.13519 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022052 B = 0.001524 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.395980 B =18373.104872 C =18849.832447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.126 6.126 3 C -0.090 4.090 4 C -0.098 4.098 5 C -0.098 4.098 6 C -0.079 4.079 7 C -0.081 4.081 8 C 0.066 3.934 9 N -0.685 5.685 10 C 0.031 3.969 11 C 0.114 3.886 12 H 0.113 0.887 13 O -0.541 6.541 14 C 0.027 3.973 15 N -0.531 5.531 16 C 0.040 3.960 17 C 0.192 3.808 18 C -0.503 4.503 19 H 0.063 0.937 20 C 0.054 3.946 21 N -0.899 5.899 22 Si 0.897 3.103 23 H -0.272 1.272 24 H -0.286 1.286 25 H -0.284 1.284 26 C -0.095 4.095 27 C -0.131 4.131 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.027 0.973 36 H 0.071 0.929 37 H 0.348 0.652 38 H 0.028 0.972 39 H 0.077 0.923 40 H 0.359 0.641 41 H 0.058 0.942 42 H 0.031 0.969 43 H 0.010 0.990 44 H 0.073 0.927 45 H 0.042 0.958 46 H -0.012 1.012 47 H 0.033 0.967 48 H 0.260 0.740 49 H 0.128 0.872 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.875 -29.602 3.702 29.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.116 5.884 3 C -0.202 4.202 4 C -0.121 4.121 5 C -0.118 4.118 6 C -0.082 4.082 7 C -0.118 4.118 8 C -0.063 4.063 9 N -0.316 5.316 10 C -0.099 4.099 11 C 0.054 3.946 12 H 0.131 0.869 13 O -0.344 6.344 14 C -0.103 4.103 15 N -0.255 5.255 16 C -0.109 4.109 17 C 0.067 3.933 18 C -0.542 4.542 19 H 0.081 0.919 20 C -0.147 4.147 21 N -0.539 5.539 22 Si 0.725 3.275 23 H -0.197 1.197 24 H -0.212 1.212 25 H -0.210 1.210 26 C -0.114 4.114 27 C -0.154 4.154 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.126 0.874 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.045 0.955 36 H 0.089 0.911 37 H 0.167 0.833 38 H 0.046 0.954 39 H 0.096 0.904 40 H 0.204 0.796 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.028 0.972 44 H 0.092 0.908 45 H 0.060 0.940 46 H 0.006 0.994 47 H 0.051 0.949 48 H 0.069 0.931 49 H 0.146 0.854 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.736 -29.971 4.587 30.329 hybrid contribution -0.410 1.150 -1.136 1.668 sum 0.325 -28.821 3.451 29.029 Atomic orbital electron populations 1.23667 0.94599 1.07128 1.05784 1.85482 1.06650 1.03520 1.92789 1.21693 0.96763 0.96225 1.05560 1.20731 0.94187 0.96128 1.01090 1.21016 0.99305 0.92042 0.99426 1.19936 0.93158 0.95694 0.99385 1.20596 1.03262 0.90614 0.97350 1.21909 1.00663 0.88049 0.95692 1.60334 1.42645 1.14506 1.14166 1.22671 1.00910 0.96678 0.89610 1.22014 0.86133 0.91888 0.94542 0.86917 1.86703 1.16094 1.77436 1.54151 1.22659 0.99049 0.92337 0.96278 1.62053 1.40979 1.00198 1.22280 1.22195 0.97735 1.01391 0.89541 1.19793 0.85892 0.93161 0.94499 1.21194 0.97319 0.93893 1.41784 0.91865 1.24989 0.94906 0.99012 0.95798 1.69968 1.03825 1.34982 1.45161 0.86449 0.78639 0.84529 0.77848 1.19677 1.21227 1.21008 1.21020 0.96262 0.95228 0.98928 1.21154 0.98127 0.93174 1.02988 0.89675 0.89659 0.87392 0.85563 0.85466 0.89694 0.90796 0.95452 0.91060 0.83280 0.95412 0.90430 0.79637 0.92331 0.95097 0.97177 0.90791 0.93958 0.99424 0.94872 0.93058 0.85387 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.67 9.15 101.05 0.92 0.26 16 2 S -0.13 -0.96 22.57 -107.50 -2.43 -3.39 16 3 C -0.09 -0.79 6.11 -39.04 -0.24 -1.03 16 4 C -0.10 -0.84 9.79 -39.37 -0.39 -1.23 16 5 C -0.10 -0.82 9.69 -39.62 -0.38 -1.20 16 6 C -0.08 -0.69 5.14 -104.58 -0.54 -1.23 16 7 C -0.08 -0.71 5.60 -27.88 -0.16 -0.86 16 8 C 0.07 0.66 5.67 -3.82 -0.02 0.64 16 9 N -0.68 -8.29 6.50 -113.78 -0.74 -9.03 16 10 C 0.03 0.40 5.36 -3.83 -0.02 0.38 16 11 C 0.11 1.86 3.23 -26.73 -0.09 1.78 16 12 H 0.11 2.27 6.55 -51.93 -0.34 1.93 16 13 O -0.54 -8.89 12.75 -35.23 -0.45 -9.34 16 14 C 0.03 0.46 4.63 -3.83 -0.02 0.44 16 15 N -0.53 -11.56 4.60 -244.36 -1.12 -12.68 16 16 C 0.04 0.79 9.33 60.07 0.56 1.35 16 17 C 0.19 5.07 4.57 -4.97 -0.02 5.05 16 18 C -0.50 -14.48 8.54 -34.44 -0.29 -14.77 16 19 H 0.06 1.81 7.10 -52.49 -0.37 1.44 16 20 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 22 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 C -0.09 -0.82 9.69 -39.61 -0.38 -1.20 16 27 C -0.13 -1.09 9.36 -39.36 -0.37 -1.46 16 28 H 0.08 0.35 7.75 -51.92 -0.40 -0.05 16 29 H 0.08 0.36 7.75 -51.93 -0.40 -0.04 16 30 H 0.11 0.34 8.14 -51.92 -0.42 -0.08 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 33 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 34 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 35 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.35 4.13 8.29 -39.29 -0.33 3.81 16 38 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.36 4.40 9.04 45.56 0.41 4.82 16 41 H 0.06 0.86 7.88 -51.93 -0.41 0.45 16 42 H 0.03 0.55 8.05 -51.93 -0.42 0.13 16 43 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 44 H 0.07 1.55 6.90 -51.93 -0.36 1.19 16 45 H 0.04 0.69 7.97 -51.93 -0.41 0.28 16 46 H -0.01 -0.34 8.11 -51.93 -0.42 -0.76 16 47 H 0.03 0.94 6.38 -51.93 -0.33 0.61 16 48 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 49 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 50 H 0.12 0.80 5.88 -52.49 -0.31 0.49 16 LS Contribution 417.02 15.07 6.28 6.28 Total: -1.00 -32.59 417.02 -12.14 -44.73 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.87 Total: 4.45 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -1.53 Total: -11.64 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: -1.13 Total: -48.14 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.45 Total: -9.34 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: -0.96 SS G_CDS: -2.43 Total: -3.39 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.59 -12.14 -44.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577603411.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.714 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds