Wall clock time and date at job start Tue Mar 31 2020 21:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81407 * 102.99916 * 2 1 4 4 C 1.50697 * 109.46965 * 179.97438 * 3 2 1 5 5 C 1.38236 * 120.00204 * 269.72523 * 4 3 2 6 6 C 1.38235 * 120.00159 * 179.76538 * 5 4 3 7 7 C 1.38236 * 119.99698 * 0.50958 * 6 5 4 8 8 C 1.50698 * 120.00163 * 179.72126 * 7 6 5 9 9 N 1.46900 * 109.47374 * 270.02408 * 8 7 6 10 10 C 1.46898 * 111.00138 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47080 * 179.97438 * 10 9 8 12 12 H 1.08993 * 109.47405 * 305.00410 * 11 10 9 13 13 O 1.42902 * 109.46948 * 65.00303 * 11 10 9 14 14 C 1.52998 * 109.47017 * 184.99901 * 11 10 9 15 15 N 1.46899 * 109.46992 * 178.50981 * 14 11 10 16 16 C 1.46900 * 110.99901 * 164.00987 * 15 14 11 17 17 C 1.46899 * 111.00371 * 287.96702 * 15 14 11 18 18 C 1.50701 * 109.47220 * 169.99979 * 17 15 14 19 19 H 1.07993 * 120.00342 * 359.97438 * 18 17 15 20 20 C 1.37874 * 119.99523 * 179.97438 * 18 17 15 21 21 N 1.31515 * 120.00341 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99798 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47141 * 90.00080 * 22 20 18 24 24 H 1.48500 * 109.47070 * 210.00424 * 22 20 18 25 25 H 1.48501 * 109.46864 * 330.00051 * 22 20 18 26 26 C 1.38242 * 120.00228 * 359.74522 * 7 6 5 27 27 C 1.38236 * 119.99682 * 359.97438 * 26 7 6 28 28 H 1.09003 * 109.47145 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46908 * 300.00521 * 1 2 3 30 30 H 1.09000 * 109.47098 * 60.00267 * 1 2 3 31 31 H 1.09001 * 109.46781 * 299.99810 * 3 2 1 32 32 H 1.08996 * 109.46965 * 59.99539 * 3 2 1 33 33 H 1.08001 * 119.99416 * 359.97438 * 5 4 3 34 34 H 1.07988 * 120.00080 * 180.22913 * 6 5 4 35 35 H 1.09008 * 109.46805 * 30.01979 * 8 7 6 36 36 H 1.09002 * 109.47579 * 150.01979 * 8 7 6 37 37 H 1.00906 * 111.00205 * 56.04340 * 9 8 7 38 38 H 1.08999 * 109.47154 * 299.99948 * 10 9 8 39 39 H 1.09000 * 109.47098 * 59.99834 * 10 9 8 40 40 H 0.96702 * 114.00411 * 59.99900 * 13 11 10 41 41 H 1.08995 * 109.47341 * 298.51027 * 14 11 10 42 42 H 1.08998 * 109.46933 * 58.51450 * 14 11 10 43 43 H 1.09004 * 109.47050 * 65.48832 * 16 15 14 44 44 H 1.09005 * 109.47378 * 185.48382 * 16 15 14 45 45 H 1.08997 * 109.47584 * 305.48890 * 16 15 14 46 46 H 1.09004 * 109.46797 * 290.00211 * 17 15 14 47 47 H 1.09000 * 109.47279 * 49.99845 * 17 15 14 48 48 H 0.97004 * 119.99933 * 179.97438 * 21 20 18 49 49 H 1.07998 * 119.99823 * 179.97438 * 26 7 6 50 50 H 1.07997 * 119.99540 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7195 1.9374 0.0006 5 6 4.4051 2.0211 1.1980 6 6 5.7792 2.1720 1.1986 7 6 6.4665 2.2498 0.0018 8 6 7.9637 2.4206 0.0023 9 7 8.2933 3.8522 0.0023 10 6 9.7479 4.0575 0.0034 11 6 10.0512 5.5572 0.0028 12 1 9.5462 6.0297 -0.8396 13 8 9.5865 6.1376 1.2231 14 6 11.5609 5.7721 -0.1217 15 7 11.8491 7.2120 -0.1583 16 6 13.2713 7.4710 0.1030 17 6 11.4335 7.7999 -1.4387 18 6 11.5142 9.3022 -1.3516 19 1 11.8412 9.7733 -0.4364 20 6 11.1707 10.0753 -2.4403 21 7 10.7721 9.5017 -3.5546 22 14 11.2701 11.9376 -2.3321 23 1 12.6215 12.3864 -2.7532 24 1 10.2477 12.5405 -3.2245 25 1 11.0200 12.3661 -0.9324 26 6 5.7802 2.1714 -1.1957 27 6 4.4068 2.0146 -1.1963 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8032 2.2371 -0.8900 32 1 1.8031 2.2372 0.8899 33 1 3.8675 1.9652 2.1331 34 1 6.3152 2.2337 2.1341 35 1 8.3826 1.9514 0.8926 36 1 8.3834 1.9512 -0.8875 37 1 7.8614 4.3227 0.7835 38 1 10.1788 3.5997 0.8938 39 1 10.1802 3.5994 -0.8861 40 1 9.9943 5.7644 2.0166 41 1 12.0637 5.3225 0.7344 42 1 11.9196 5.3064 -1.0396 43 1 13.8709 7.0572 -0.7078 44 1 13.4392 8.5462 0.1667 45 1 13.5593 7.0019 1.0437 46 1 12.0922 7.4460 -2.2318 47 1 10.4080 7.5033 -1.6589 48 1 10.5301 10.0457 -4.3204 49 1 6.3172 2.2326 -2.1308 50 1 3.8707 1.9538 -2.1318 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578007470.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:37 Heat of formation + Delta-G solvation = -26.913730 kcal Electronic energy + Delta-G solvation = -25851.370405 eV Core-core repulsion = 22197.305429 eV Total energy + Delta-G solvation = -3654.064976 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.72751 -38.19263 -36.13423 -35.11130 -33.00678 -32.43775 -31.12592 -30.09792 -29.39759 -28.06475 -27.23100 -25.60124 -23.98183 -23.03002 -22.89297 -21.51749 -20.93176 -19.98161 -17.08399 -16.68964 -16.35376 -16.10046 -15.87030 -15.58913 -15.29927 -14.98496 -14.70296 -14.50742 -14.38867 -14.27668 -14.04763 -13.81111 -13.59808 -13.45143 -13.27231 -13.14354 -12.85209 -12.49804 -12.24978 -12.13488 -11.93799 -11.80680 -11.35855 -11.24210 -11.15146 -11.11967 -10.89288 -10.67045 -10.62584 -10.50014 -10.30445 -9.71240 -9.58659 -9.09989 -9.08920 -8.80817 -8.40510 -8.36927 -8.08621 -7.17093 -5.96914 -3.97302 0.68732 1.25050 1.62201 2.19648 3.35735 3.41814 3.47030 3.55921 4.17898 4.31134 4.42623 4.48292 4.68373 4.69972 4.71781 4.74189 4.79667 4.81847 4.98170 5.08842 5.19673 5.24949 5.27082 5.32682 5.37256 5.40478 5.45776 5.52210 5.61487 5.74214 5.78360 5.82704 5.88347 6.06680 6.11280 6.18173 6.32052 6.36137 6.45440 6.56431 6.73486 6.77679 6.95251 7.33115 7.35989 7.38211 7.84784 8.09540 8.16011 8.25494 8.60611 9.09712 9.66269 11.14157 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015425 B = 0.001748 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.746135 B =16014.354073 C =17183.315049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.256 6.256 3 C -0.042 4.042 4 C -0.080 4.080 5 C -0.100 4.100 6 C -0.113 4.113 7 C -0.071 4.071 8 C 0.096 3.904 9 N -0.677 5.677 10 C 0.030 3.970 11 C 0.114 3.886 12 H 0.113 0.887 13 O -0.541 6.541 14 C 0.027 3.973 15 N -0.531 5.531 16 C 0.040 3.960 17 C 0.192 3.808 18 C -0.504 4.504 19 H 0.062 0.938 20 C 0.054 3.946 21 N -0.899 5.899 22 Si 0.897 3.103 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.273 1.273 26 C -0.095 4.095 27 C -0.100 4.100 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.036 0.964 36 H 0.080 0.920 37 H 0.350 0.650 38 H 0.029 0.971 39 H 0.079 0.921 40 H 0.359 0.641 41 H 0.058 0.942 42 H 0.031 0.969 43 H 0.010 0.990 44 H 0.073 0.927 45 H 0.042 0.958 46 H -0.012 1.012 47 H 0.033 0.967 48 H 0.260 0.740 49 H 0.127 0.873 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.911 -21.346 9.129 27.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S -0.028 6.028 3 C -0.189 4.189 4 C -0.082 4.082 5 C -0.120 4.120 6 C -0.132 4.132 7 C -0.073 4.073 8 C -0.032 4.032 9 N -0.310 5.310 10 C -0.100 4.100 11 C 0.055 3.945 12 H 0.131 0.869 13 O -0.344 6.344 14 C -0.103 4.103 15 N -0.255 5.255 16 C -0.108 4.108 17 C 0.067 3.933 18 C -0.543 4.543 19 H 0.081 0.919 20 C -0.147 4.147 21 N -0.539 5.539 22 Si 0.725 3.275 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.198 1.198 26 C -0.114 4.114 27 C -0.120 4.120 28 H 0.119 0.881 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.054 0.946 36 H 0.098 0.902 37 H 0.169 0.831 38 H 0.047 0.953 39 H 0.097 0.903 40 H 0.203 0.797 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.028 0.972 44 H 0.092 0.908 45 H 0.060 0.940 46 H 0.006 0.994 47 H 0.051 0.949 48 H 0.070 0.930 49 H 0.145 0.855 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.049 -21.542 8.215 27.532 hybrid contribution 0.219 1.009 0.453 1.127 sum -14.830 -20.534 8.668 26.771 Atomic orbital electron populations 1.23414 0.94644 1.06512 1.04924 1.87232 1.06695 1.10862 1.98036 1.22303 0.96217 0.94656 1.05726 1.19128 0.92721 1.02329 0.94018 1.20933 0.94215 0.99641 0.97228 1.21010 0.94089 1.00456 0.97632 1.19845 0.95444 0.98766 0.93227 1.20908 0.91116 0.89987 1.01222 1.60396 1.09818 1.09624 1.51122 1.22707 0.88193 0.98298 1.00777 1.22010 0.93861 0.89948 0.88729 0.86921 1.86711 1.67448 1.65439 1.14768 1.22655 0.95996 0.91973 0.99670 1.62045 1.16944 1.08813 1.37717 1.22193 0.88672 1.02374 0.97609 1.19785 0.95696 0.94856 0.82952 1.21151 1.43963 0.90851 0.98298 0.91932 1.24984 0.95491 0.98847 0.95360 1.69959 1.45656 1.35394 1.02896 0.86508 0.77550 0.85420 0.78001 1.20849 1.21278 1.19776 1.21043 0.93805 0.98527 0.98008 1.21015 0.94374 0.99315 0.97288 0.88086 0.90507 0.90462 0.89135 0.89211 0.85997 0.86074 0.94567 0.90159 0.83117 0.95329 0.90300 0.79658 0.92319 0.95071 0.97180 0.90811 0.93958 0.99430 0.94876 0.93004 0.85495 0.85862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.65 10.76 101.05 1.09 0.44 16 2 S -0.26 -2.14 22.36 -107.50 -2.40 -4.54 16 3 C -0.04 -0.32 6.07 36.00 0.22 -0.10 16 4 C -0.08 -0.76 5.14 -104.62 -0.54 -1.29 16 5 C -0.10 -0.94 9.70 -39.58 -0.38 -1.32 16 6 C -0.11 -1.10 9.70 -39.58 -0.38 -1.48 16 7 C -0.07 -0.75 5.39 -104.62 -0.56 -1.32 16 8 C 0.10 0.99 5.81 -4.98 -0.03 0.96 16 9 N -0.68 -8.44 6.49 -115.06 -0.75 -9.18 16 10 C 0.03 0.38 5.36 -3.82 -0.02 0.36 16 11 C 0.11 1.87 3.23 -26.73 -0.09 1.78 16 12 H 0.11 2.29 6.55 -51.93 -0.34 1.95 16 13 O -0.54 -8.96 12.75 -35.23 -0.45 -9.41 16 14 C 0.03 0.46 4.63 -3.83 -0.02 0.45 16 15 N -0.53 -11.56 4.60 -244.37 -1.12 -12.68 16 16 C 0.04 0.79 9.32 60.06 0.56 1.35 16 17 C 0.19 5.10 4.57 -4.98 -0.02 5.07 16 18 C -0.50 -14.53 8.54 -34.44 -0.29 -14.83 16 19 H 0.06 1.79 7.10 -52.49 -0.37 1.42 16 20 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 22 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 26 C -0.10 -1.01 9.70 -39.58 -0.38 -1.39 16 27 C -0.10 -0.99 9.70 -39.58 -0.38 -1.37 16 28 H 0.10 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 30 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 31 H 0.09 0.60 8.09 -51.92 -0.42 0.18 16 32 H 0.09 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.04 0.33 8.09 -51.92 -0.42 -0.09 16 36 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 37 H 0.35 4.43 8.28 -39.29 -0.33 4.11 16 38 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.36 4.42 9.05 45.56 0.41 4.83 16 41 H 0.06 0.86 7.88 -51.93 -0.41 0.45 16 42 H 0.03 0.55 8.05 -51.93 -0.42 0.13 16 43 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 44 H 0.07 1.55 6.90 -51.93 -0.36 1.19 16 45 H 0.04 0.69 7.97 -51.93 -0.41 0.28 16 46 H -0.01 -0.34 8.11 -51.93 -0.42 -0.76 16 47 H 0.03 0.94 6.38 -51.93 -0.33 0.61 16 48 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 49 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 50 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 421.42 15.07 6.35 6.35 Total: -1.00 -32.81 421.42 -12.02 -44.82 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -8.02 Total: 5.23 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -1.34 Total: -11.23 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -1.13 Total: -48.35 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.45 Total: -9.41 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: -2.14 SS G_CDS: -2.40 Total: -4.54 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -32.81 -12.02 -44.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578007470.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.911 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds