Wall clock time and date at job start Tue Mar 31 2020 21:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81407 * 102.99916 * 2 1 4 4 C 1.50697 * 109.46965 * 179.97438 * 3 2 1 5 5 C 1.38236 * 120.00204 * 269.72523 * 4 3 2 6 6 C 1.38235 * 120.00159 * 179.76538 * 5 4 3 7 7 C 1.38236 * 119.99698 * 0.50958 * 6 5 4 8 8 C 1.50698 * 120.00163 * 179.72126 * 7 6 5 9 9 N 1.46900 * 109.47374 * 270.02408 * 8 7 6 10 10 C 1.46898 * 111.00138 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47080 * 179.97438 * 10 9 8 12 12 H 1.08993 * 109.47405 * 305.00410 * 11 10 9 13 13 O 1.42902 * 109.46948 * 65.00303 * 11 10 9 14 14 C 1.52998 * 109.47017 * 184.99901 * 11 10 9 15 15 N 1.46899 * 109.46992 * 178.50981 * 14 11 10 16 16 C 1.46900 * 110.99901 * 164.00987 * 15 14 11 17 17 C 1.46899 * 111.00371 * 287.96702 * 15 14 11 18 18 C 1.50701 * 109.47220 * 169.99979 * 17 15 14 19 19 H 1.07993 * 120.00342 * 359.97438 * 18 17 15 20 20 C 1.37874 * 119.99523 * 179.97438 * 18 17 15 21 21 N 1.31515 * 120.00341 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99798 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47141 * 90.00080 * 22 20 18 24 24 H 1.48500 * 109.47070 * 210.00424 * 22 20 18 25 25 H 1.48501 * 109.46864 * 330.00051 * 22 20 18 26 26 C 1.38242 * 120.00228 * 359.74522 * 7 6 5 27 27 C 1.38236 * 119.99682 * 359.97438 * 26 7 6 28 28 H 1.09003 * 109.47145 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46908 * 300.00521 * 1 2 3 30 30 H 1.09000 * 109.47098 * 60.00267 * 1 2 3 31 31 H 1.09001 * 109.46781 * 299.99810 * 3 2 1 32 32 H 1.08996 * 109.46965 * 59.99539 * 3 2 1 33 33 H 1.08001 * 119.99416 * 359.97438 * 5 4 3 34 34 H 1.07988 * 120.00080 * 180.22913 * 6 5 4 35 35 H 1.09008 * 109.46805 * 30.01979 * 8 7 6 36 36 H 1.09002 * 109.47579 * 150.01979 * 8 7 6 37 37 H 1.00906 * 111.00205 * 56.04340 * 9 8 7 38 38 H 1.08999 * 109.47154 * 299.99948 * 10 9 8 39 39 H 1.09000 * 109.47098 * 59.99834 * 10 9 8 40 40 H 0.96702 * 114.00411 * 59.99900 * 13 11 10 41 41 H 1.08995 * 109.47341 * 298.51027 * 14 11 10 42 42 H 1.08998 * 109.46933 * 58.51450 * 14 11 10 43 43 H 1.09004 * 109.47050 * 65.48832 * 16 15 14 44 44 H 1.09005 * 109.47378 * 185.48382 * 16 15 14 45 45 H 1.08997 * 109.47584 * 305.48890 * 16 15 14 46 46 H 1.09004 * 109.46797 * 290.00211 * 17 15 14 47 47 H 1.09000 * 109.47279 * 49.99845 * 17 15 14 48 48 H 0.97004 * 119.99933 * 179.97438 * 21 20 18 49 49 H 1.07998 * 119.99823 * 179.97438 * 26 7 6 50 50 H 1.07997 * 119.99540 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7195 1.9374 0.0006 5 6 4.4051 2.0211 1.1980 6 6 5.7792 2.1720 1.1986 7 6 6.4665 2.2498 0.0018 8 6 7.9637 2.4206 0.0023 9 7 8.2933 3.8522 0.0023 10 6 9.7479 4.0575 0.0034 11 6 10.0512 5.5572 0.0028 12 1 9.5462 6.0297 -0.8396 13 8 9.5865 6.1376 1.2231 14 6 11.5609 5.7721 -0.1217 15 7 11.8491 7.2120 -0.1583 16 6 13.2713 7.4710 0.1030 17 6 11.4335 7.7999 -1.4387 18 6 11.5142 9.3022 -1.3516 19 1 11.8412 9.7733 -0.4364 20 6 11.1707 10.0753 -2.4403 21 7 10.7721 9.5017 -3.5546 22 14 11.2701 11.9376 -2.3321 23 1 12.6215 12.3864 -2.7532 24 1 10.2477 12.5405 -3.2245 25 1 11.0200 12.3661 -0.9324 26 6 5.7802 2.1714 -1.1957 27 6 4.4068 2.0146 -1.1963 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8032 2.2371 -0.8900 32 1 1.8031 2.2372 0.8899 33 1 3.8675 1.9652 2.1331 34 1 6.3152 2.2337 2.1341 35 1 8.3826 1.9514 0.8926 36 1 8.3834 1.9512 -0.8875 37 1 7.8614 4.3227 0.7835 38 1 10.1788 3.5997 0.8938 39 1 10.1802 3.5994 -0.8861 40 1 9.9943 5.7644 2.0166 41 1 12.0637 5.3225 0.7344 42 1 11.9196 5.3064 -1.0396 43 1 13.8709 7.0572 -0.7078 44 1 13.4392 8.5462 0.1667 45 1 13.5593 7.0019 1.0437 46 1 12.0922 7.4460 -2.2318 47 1 10.4080 7.5033 -1.6589 48 1 10.5301 10.0457 -4.3204 49 1 6.3172 2.2326 -2.1308 50 1 3.8707 1.9538 -2.1318 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578007470.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:37 Heat of formation + Delta-G solvation = -50.091185 kcal Electronic energy + Delta-G solvation = -25852.375455 eV Core-core repulsion = 22197.305429 eV Total energy + Delta-G solvation = -3655.070026 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.47402 -39.52468 -37.50265 -36.31084 -34.59837 -33.82498 -31.85569 -31.26077 -29.90672 -29.40849 -28.81901 -26.83160 -25.45642 -24.29120 -23.67266 -22.79822 -21.83134 -21.53153 -18.61829 -17.88468 -17.44033 -17.27739 -16.74849 -16.66238 -16.44451 -16.24406 -15.93715 -15.87431 -15.42462 -15.14114 -14.94789 -14.89125 -14.66893 -14.36973 -14.24905 -14.02264 -13.87592 -13.79484 -13.49643 -13.13172 -13.11287 -12.93369 -12.82832 -12.70143 -12.59050 -12.52331 -12.29762 -12.14918 -11.97376 -11.86910 -11.48376 -11.30824 -11.06887 -10.75844 -10.59698 -9.83607 -9.57879 -9.28096 -8.94189 -8.70992 -8.19405 -6.28989 0.00762 0.50425 1.01887 1.39762 1.42167 1.53745 1.66727 2.40888 2.77137 3.10861 3.14590 3.52526 3.64632 3.72450 3.79428 3.93338 4.00452 4.11015 4.13199 4.19900 4.33704 4.35135 4.35432 4.42512 4.49250 4.51979 4.57000 4.60657 4.62632 4.67935 4.78820 4.79031 4.81465 4.88879 5.06257 5.08741 5.13955 5.15607 5.27090 5.32821 5.44138 5.59449 5.65615 5.69110 6.00045 6.07409 6.09907 6.36066 6.42891 6.66438 6.87074 7.07388 7.40305 8.91750 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015425 B = 0.001748 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.746135 B =16014.354073 C =17183.315049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.308 6.308 3 C -0.032 4.032 4 C -0.086 4.086 5 C -0.107 4.107 6 C -0.118 4.118 7 C -0.085 4.085 8 C 0.102 3.898 9 N -0.694 5.694 10 C 0.045 3.955 11 C 0.124 3.876 12 H 0.062 0.938 13 O -0.560 6.560 14 C 0.027 3.973 15 N -0.542 5.542 16 C 0.041 3.959 17 C 0.210 3.790 18 C -0.524 4.524 19 H 0.061 0.939 20 C -0.001 4.001 21 N -0.935 5.935 22 Si 0.969 3.031 23 H -0.270 1.270 24 H -0.282 1.282 25 H -0.266 1.266 26 C -0.112 4.112 27 C -0.111 4.111 28 H 0.109 0.891 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.348 0.652 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.379 0.621 41 H 0.099 0.901 42 H 0.027 0.973 43 H 0.007 0.993 44 H 0.054 0.946 45 H 0.084 0.916 46 H -0.043 1.043 47 H 0.004 0.996 48 H 0.264 0.736 49 H 0.125 0.875 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.182 -21.691 11.086 28.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.081 6.081 3 C -0.179 4.179 4 C -0.087 4.087 5 C -0.127 4.127 6 C -0.136 4.136 7 C -0.086 4.086 8 C -0.026 4.026 9 N -0.327 5.327 10 C -0.085 4.085 11 C 0.063 3.937 12 H 0.080 0.920 13 O -0.365 6.365 14 C -0.102 4.102 15 N -0.266 5.266 16 C -0.107 4.107 17 C 0.083 3.917 18 C -0.562 4.562 19 H 0.079 0.921 20 C -0.199 4.199 21 N -0.575 5.575 22 Si 0.794 3.206 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.191 1.191 26 C -0.131 4.131 27 C -0.131 4.131 28 H 0.128 0.872 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.167 0.833 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.227 0.773 41 H 0.117 0.883 42 H 0.045 0.955 43 H 0.026 0.974 44 H 0.072 0.928 45 H 0.102 0.898 46 H -0.025 1.025 47 H 0.022 0.978 48 H 0.072 0.928 49 H 0.143 0.857 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.304 -21.912 10.197 28.606 hybrid contribution 0.247 1.046 -0.116 1.081 sum -15.057 -20.866 10.081 27.635 Atomic orbital electron populations 1.23454 0.91376 1.07406 1.05933 1.87383 1.10388 1.12095 1.98185 1.22272 0.95037 0.93890 1.06718 1.19377 0.93841 1.01627 0.93876 1.21202 0.94339 0.99219 0.97938 1.21236 0.94449 0.99985 0.97959 1.19945 0.95667 0.99461 0.93538 1.20882 0.91135 0.88626 1.01954 1.60343 1.09748 1.11182 1.51409 1.22485 0.88621 0.95233 1.02170 1.21716 0.92562 0.92043 0.87332 0.92023 1.86658 1.67980 1.66278 1.15613 1.22788 0.97033 0.89268 1.01122 1.61940 1.18439 1.11738 1.34473 1.22219 0.87300 1.01617 0.99545 1.19375 0.93448 0.94295 0.84534 1.21492 1.44077 0.92227 0.98393 0.92082 1.25936 0.94859 1.04211 0.94873 1.70093 1.46369 1.37411 1.03673 0.85382 0.78046 0.78932 0.78254 1.19570 1.20754 1.19057 1.21185 0.94385 0.99282 0.98246 1.21193 0.94310 0.99512 0.98103 0.87241 0.89372 0.89562 0.88378 0.87940 0.84363 0.84512 0.92868 0.90205 0.83337 0.92281 0.90286 0.77276 0.88291 0.95500 0.97412 0.92763 0.89777 1.02494 0.97794 0.92762 0.85717 0.85042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.76 113.37 1.22 0.25 16 2 S -0.31 -4.90 22.36 -56.49 -1.26 -6.16 16 3 C -0.03 -0.45 6.07 71.23 0.43 -0.02 16 4 C -0.09 -1.56 5.14 -19.87 -0.10 -1.67 16 5 C -0.11 -1.89 9.70 22.27 0.22 -1.68 16 6 C -0.12 -2.17 9.70 22.27 0.22 -1.95 16 7 C -0.08 -1.75 5.39 -19.86 -0.11 -1.86 16 8 C 0.10 2.00 5.81 85.56 0.50 2.50 16 9 N -0.69 -16.92 6.49 -517.92 -3.36 -20.28 16 10 C 0.04 1.06 5.36 86.30 0.46 1.52 16 11 C 0.12 4.04 3.23 30.59 0.10 4.14 16 12 H 0.06 2.66 6.55 -2.39 -0.02 2.65 16 13 O -0.56 -18.07 12.75 -148.98 -1.90 -19.97 16 14 C 0.03 0.90 4.63 86.30 0.40 1.30 16 15 N -0.54 -23.60 4.60 -927.05 -4.27 -27.86 16 16 C 0.04 1.58 9.32 127.69 1.19 2.77 16 17 C 0.21 11.59 4.57 85.56 0.39 11.98 16 18 C -0.52 -30.89 8.54 25.60 0.22 -30.67 16 19 H 0.06 3.54 7.10 -2.91 -0.02 3.52 16 20 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 21 N -0.93 -58.09 13.29 21.45 0.28 -57.81 16 22 Si 0.97 45.76 29.54 68.60 2.03 47.78 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 26 C -0.11 -2.43 9.70 22.27 0.22 -2.21 16 27 C -0.11 -2.22 9.70 22.27 0.22 -2.00 16 28 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.10 1.20 8.09 -2.39 -0.02 1.18 16 32 H 0.10 1.16 8.08 -2.39 -0.02 1.14 16 33 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 34 H 0.14 1.99 8.06 -2.92 -0.02 1.96 16 35 H 0.05 0.86 8.09 -2.38 -0.02 0.84 16 36 H 0.08 1.55 8.09 -2.39 -0.02 1.53 16 37 H 0.35 8.60 8.28 -89.69 -0.74 7.86 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.38 8.44 9.05 -74.06 -0.67 7.77 16 41 H 0.10 2.54 7.88 -2.39 -0.02 2.52 16 42 H 0.03 0.94 8.05 -2.39 -0.02 0.92 16 43 H 0.01 0.28 8.13 -2.39 -0.02 0.26 16 44 H 0.05 2.25 6.90 -2.38 -0.02 2.23 16 45 H 0.08 2.49 7.97 -2.39 -0.02 2.47 16 46 H -0.04 -2.54 8.11 -2.38 -0.02 -2.56 16 47 H 0.00 0.24 6.38 -2.39 -0.02 0.23 16 48 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 49 H 0.12 2.61 8.06 -2.91 -0.02 2.59 16 50 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -73.21 421.42 -2.95 -76.16 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: -0.49 Total: 25.35 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 6.03 Total: -17.21 kcal Atomic # 7 Polarization: -98.61 SS G_CDS: -7.34 Total: -105.95 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -1.90 Total: -19.97 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Atomic # 16 Polarization: -4.90 SS G_CDS: -1.26 Total: -6.16 kcal Total: -73.21 -2.95 -76.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578007470.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.065 kcal (2) G-P(sol) polarization free energy of solvation -73.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds