Wall clock time and date at job start Tue Mar 31 2020 21:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 110.99788 * 2 1 4 4 C 1.50697 * 109.47419 * 293.95759 * 3 2 1 5 5 H 1.08001 * 120.00236 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00096 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99751 * 359.97438 * 6 4 3 8 8 Si 1.86792 * 120.00291 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47139 * 89.99709 * 8 6 4 10 10 H 1.48500 * 109.47583 * 210.00160 * 8 6 4 11 11 H 1.48509 * 109.46957 * 330.00104 * 8 6 4 12 12 C 1.46898 * 111.00171 * 123.95873 * 2 1 3 13 13 C 1.53005 * 109.46876 * 164.68122 * 12 2 1 14 14 H 1.08991 * 109.47382 * 57.69320 * 13 12 2 15 15 O 1.42898 * 109.46887 * 297.68736 * 13 12 2 16 16 C 1.52996 * 109.46832 * 177.69385 * 13 12 2 17 17 N 1.46903 * 109.47270 * 184.99768 * 16 13 12 18 18 C 1.46898 * 111.00232 * 184.08141 * 17 16 13 19 19 H 1.08991 * 109.40511 * 323.31076 * 18 17 16 20 20 C 1.53071 * 109.43450 * 83.20841 * 18 17 16 21 21 C 1.53411 * 108.28937 * 168.33851 * 20 18 17 22 22 O 1.42822 * 108.39352 * 295.30515 * 21 20 18 23 23 C 1.35902 * 117.87110 * 49.14185 * 22 21 20 24 24 C 1.39126 * 118.47651 * 163.06944 * 23 22 21 25 25 C 1.37972 * 120.24956 * 179.76706 * 24 23 22 26 26 C 1.38480 * 119.93288 * 359.49402 * 25 24 23 27 27 F 1.35096 * 120.03376 * 180.35976 * 26 25 24 28 28 C 1.38285 * 119.92901 * 0.59484 * 26 25 24 29 29 C 1.38363 * 121.78862 * 342.74138 * 23 22 21 30 30 H 1.09005 * 109.46974 * 301.39782 * 1 2 3 31 31 H 1.08996 * 109.47433 * 61.39886 * 1 2 3 32 32 H 1.09002 * 109.47212 * 181.40354 * 1 2 3 33 33 H 1.08996 * 109.47173 * 53.96199 * 3 2 1 34 34 H 1.09001 * 109.47154 * 173.95778 * 3 2 1 35 35 H 0.97003 * 120.00042 * 179.97438 * 7 6 4 36 36 H 1.08994 * 109.47178 * 44.67931 * 12 2 1 37 37 H 1.08999 * 109.46890 * 284.67967 * 12 2 1 38 38 H 0.96702 * 114.00878 * 300.00409 * 15 13 12 39 39 H 1.09001 * 109.47790 * 64.99849 * 16 13 12 40 40 H 1.08997 * 109.47389 * 304.99795 * 16 13 12 41 41 H 1.00897 * 110.99632 * 308.04011 * 17 16 13 42 42 H 1.08991 * 109.70133 * 288.04022 * 20 18 17 43 43 H 1.09005 * 109.70055 * 48.64393 * 20 18 17 44 44 H 1.09000 * 109.67603 * 55.03603 * 21 20 18 45 45 H 1.09000 * 109.68051 * 175.54410 * 21 20 18 46 46 H 1.08000 * 119.87600 * 359.48444 * 24 23 22 47 47 H 1.08002 * 120.03233 * 179.75273 * 25 24 23 48 48 H 1.07999 * 119.85717 * 179.76200 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0738 1.5116 -2.0484 6 6 2.0275 3.3492 -1.5288 7 7 2.7127 4.0016 -0.6152 8 14 1.5825 4.1871 -3.1378 9 1 0.2706 4.8681 -2.9950 10 1 2.6250 5.1878 -3.4798 11 1 1.4979 3.1715 -4.2180 12 6 1.9955 -0.7661 1.1375 13 6 3.4772 -1.0696 0.9059 14 1 4.0225 -0.1357 0.7702 15 8 3.6205 -1.8791 -0.2629 16 6 4.0398 -1.8173 2.1163 17 7 5.4872 -2.0034 1.9476 18 6 6.0467 -2.8031 3.0455 19 1 5.5386 -2.5474 3.9752 20 6 5.8441 -4.2906 2.7467 21 6 6.6832 -5.1005 3.7436 22 8 8.0629 -4.8198 3.5039 23 6 8.4386 -3.5173 3.4065 24 6 9.7886 -3.2052 3.5323 25 6 10.2111 -1.8954 3.4348 26 6 9.2904 -0.8880 3.2004 27 9 9.7029 0.3944 3.0972 28 6 7.9478 -1.1953 3.0768 29 6 7.5191 -2.5084 3.1810 30 1 -0.3633 0.5354 0.8772 31 1 -0.3634 0.4919 -0.9022 32 1 -0.3634 -1.0274 0.0252 33 1 1.5612 1.9273 0.8310 34 1 3.0797 1.3444 0.1082 35 1 2.9880 4.9175 -0.7774 36 1 1.4436 -1.7011 1.2324 37 1 1.8826 -0.1831 2.0515 38 1 3.1598 -2.7279 -0.2125 39 1 3.5557 -2.7904 2.1995 40 1 3.8508 -1.2391 3.0207 41 1 5.6961 -2.4209 1.0531 42 1 4.7909 -4.5478 2.8588 43 1 6.1701 -4.5089 1.7297 44 1 6.4215 -4.8132 4.7620 45 1 6.4947 -6.1647 3.6025 46 1 10.5079 -3.9906 3.7116 47 1 11.2595 -1.6567 3.5370 48 1 7.2303 -0.4082 2.8979 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578859477.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:01 Heat of formation + Delta-G solvation = -99.692297 kcal Electronic energy + Delta-G solvation = -29412.451307 eV Core-core repulsion = 25189.017239 eV Total energy + Delta-G solvation = -4223.434068 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.83751 -41.05060 -38.36719 -37.53413 -36.57389 -35.32274 -32.50055 -32.30914 -30.95588 -30.13200 -29.25425 -27.30317 -26.06301 -24.49294 -24.03189 -23.29397 -22.52210 -21.63903 -20.50000 -20.02042 -18.11177 -17.63178 -17.17192 -16.60878 -16.19954 -16.02740 -15.69146 -15.40685 -15.25146 -15.05272 -14.81570 -14.56339 -14.33558 -14.06611 -13.87398 -13.63259 -13.46235 -13.32026 -13.08908 -12.95524 -12.58938 -12.36470 -12.15709 -11.92219 -11.81207 -11.49225 -11.38594 -11.19019 -11.12210 -10.92501 -10.73604 -10.72802 -10.64678 -10.33527 -9.74815 -9.64539 -9.19133 -9.11796 -8.59338 -8.39116 -8.26627 -7.21559 -5.98661 -3.99231 0.92568 1.05841 2.91784 3.32607 3.34774 3.41187 3.46036 3.83398 4.07156 4.28257 4.35916 4.39080 4.46096 4.63348 4.66899 4.76222 4.87521 4.92523 4.99832 5.09724 5.15302 5.17768 5.27999 5.33465 5.39100 5.46423 5.51788 5.58409 5.66654 5.70182 5.75476 5.93291 6.00753 6.01920 6.06949 6.15549 6.32075 6.47953 6.54367 6.70059 6.81924 7.09980 7.23144 7.29796 7.32579 7.81914 8.02521 8.11660 8.21636 8.57408 9.07569 9.64501 11.12408 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012648 B = 0.002609 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.333138 B =10727.581193 C =12470.830127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.028 3.972 13 C 0.113 3.887 14 H 0.114 0.886 15 O -0.541 6.541 16 C 0.030 3.970 17 N -0.672 5.672 18 C 0.132 3.868 19 H 0.093 0.907 20 C -0.191 4.191 21 C 0.066 3.934 22 O -0.315 6.315 23 C 0.123 3.877 24 C -0.129 4.129 25 C -0.119 4.119 26 C 0.060 3.940 27 F -0.140 7.140 28 C -0.084 4.084 29 C -0.127 4.127 30 H 0.010 0.990 31 H 0.074 0.926 32 H 0.042 0.958 33 H -0.012 1.012 34 H 0.033 0.967 35 H 0.261 0.739 36 H 0.058 0.942 37 H 0.031 0.969 38 H 0.359 0.641 39 H 0.031 0.969 40 H 0.080 0.920 41 H 0.354 0.646 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.108 0.892 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.542 -19.762 12.608 25.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.256 5.256 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.080 0.920 6 C -0.147 4.147 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.102 4.102 13 C 0.053 3.947 14 H 0.132 0.868 15 O -0.343 6.343 16 C -0.100 4.100 17 N -0.303 5.303 18 C 0.021 3.979 19 H 0.111 0.889 20 C -0.230 4.230 21 C -0.010 4.010 22 O -0.229 6.229 23 C 0.077 3.923 24 C -0.147 4.147 25 C -0.138 4.138 26 C 0.041 3.959 27 F -0.118 7.118 28 C -0.103 4.103 29 C -0.128 4.128 30 H 0.028 0.972 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.006 0.994 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.204 0.796 39 H 0.049 0.951 40 H 0.098 0.902 41 H 0.175 0.825 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.126 0.874 46 H 0.156 0.844 47 H 0.157 0.843 48 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.406 -18.790 12.257 24.731 hybrid contribution -1.332 0.019 -0.026 1.332 sum 9.074 -18.771 12.231 24.172 Atomic orbital electron populations 1.22193 0.88882 0.98812 1.00963 1.62052 1.06483 1.17981 1.39045 1.19786 0.95610 0.81350 0.96547 1.21132 1.34667 0.96815 1.01704 0.91958 1.24984 0.95327 0.97393 0.96958 1.69955 1.38377 1.11433 1.34082 0.86509 0.77900 0.79229 0.83856 1.20845 1.21239 1.19760 1.22643 0.95609 0.98183 0.93800 1.22031 0.94864 0.94705 0.83115 0.86796 1.86720 1.75538 1.32334 1.39747 1.22755 0.87462 0.99159 1.00655 1.60425 1.12588 1.52128 1.05176 1.20311 0.90927 0.90161 0.96465 0.88935 1.23022 1.01784 0.96971 1.01237 1.22923 0.78720 1.00836 0.98476 1.85997 1.27655 1.22063 1.87180 1.18729 0.93044 0.82906 0.97589 1.20337 0.93435 0.96214 1.04762 1.20925 0.99930 0.91567 1.01379 1.17601 0.93112 0.79062 1.06157 1.91509 1.90868 1.35539 1.93932 1.21021 0.94165 0.97339 0.97758 1.19579 0.95188 0.92603 1.05460 0.97159 0.90761 0.93962 0.99420 0.94889 0.92958 0.92314 0.95084 0.79631 0.95061 0.90180 0.82519 0.89593 0.89883 0.91619 0.87377 0.84416 0.84303 0.83241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 9.33 60.07 0.56 1.33 16 2 N -0.53 -11.33 4.62 -244.37 -1.13 -12.46 16 3 C 0.19 5.02 4.57 -4.98 -0.02 5.00 16 4 C -0.50 -14.42 8.53 -34.44 -0.29 -14.71 16 5 H 0.06 1.77 7.10 -52.49 -0.37 1.40 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 8 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.03 0.46 4.62 -3.82 -0.02 0.44 16 13 C 0.11 1.74 3.21 -26.73 -0.09 1.65 16 14 H 0.11 2.22 6.50 -51.93 -0.34 1.88 16 15 O -0.54 -8.49 12.71 -35.23 -0.45 -8.93 16 16 C 0.03 0.33 5.16 -3.82 -0.02 0.31 16 17 N -0.67 -7.55 5.47 -107.88 -0.59 -8.14 16 18 C 0.13 1.23 2.59 -68.79 -0.18 1.06 16 19 H 0.09 0.83 7.87 -51.93 -0.41 0.42 16 20 C -0.19 -1.39 5.42 -26.48 -0.14 -1.53 16 21 C 0.07 0.44 7.03 37.37 0.26 0.71 16 22 O -0.31 -3.02 10.27 -19.43 -0.20 -3.22 16 23 C 0.12 1.28 6.47 -39.21 -0.25 1.02 16 24 C -0.13 -1.22 9.93 -39.35 -0.39 -1.61 16 25 C -0.12 -1.17 10.02 -39.59 -0.40 -1.57 16 26 C 0.06 0.72 7.30 -39.47 -0.29 0.44 16 27 F -0.14 -1.89 17.27 2.25 0.04 -1.85 16 28 C -0.08 -1.02 9.25 -39.46 -0.36 -1.38 16 29 C -0.13 -1.37 5.56 -104.44 -0.58 -1.95 16 30 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 31 H 0.07 1.54 6.90 -51.93 -0.36 1.18 16 32 H 0.04 0.67 7.98 -51.93 -0.41 0.26 16 33 H -0.01 -0.33 8.11 -51.93 -0.42 -0.76 16 34 H 0.03 0.92 6.33 -51.93 -0.33 0.59 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.06 0.82 7.89 -51.93 -0.41 0.41 16 37 H 0.03 0.52 8.06 -51.93 -0.42 0.11 16 38 H 0.36 4.12 9.05 45.56 0.41 4.53 16 39 H 0.03 0.29 7.47 -51.93 -0.39 -0.10 16 40 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 41 H 0.35 4.19 7.82 -39.29 -0.31 3.88 16 42 H 0.09 0.51 7.64 -51.93 -0.40 0.11 16 43 H 0.08 0.68 7.92 -51.93 -0.41 0.27 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 48 H 0.15 1.95 7.69 -52.49 -0.40 1.55 16 LS Contribution 390.24 15.07 5.88 5.88 Total: -1.00 -32.55 390.24 -9.68 -42.23 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.64 Total: 5.14 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -2.31 Total: -9.33 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -0.98 Total: -46.96 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -0.65 Total: -12.15 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.55 -9.68 -42.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578859477.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.466 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds