Wall clock time and date at job start Tue Mar 31 2020 21:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 110.99788 * 2 1 4 4 C 1.50697 * 109.47419 * 293.95759 * 3 2 1 5 5 H 1.08001 * 120.00236 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00096 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99751 * 359.97438 * 6 4 3 8 8 Si 1.86792 * 120.00291 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47139 * 89.99709 * 8 6 4 10 10 H 1.48500 * 109.47583 * 210.00160 * 8 6 4 11 11 H 1.48509 * 109.46957 * 330.00104 * 8 6 4 12 12 C 1.46898 * 111.00171 * 123.95873 * 2 1 3 13 13 C 1.53005 * 109.46876 * 164.68122 * 12 2 1 14 14 H 1.08991 * 109.47382 * 57.69320 * 13 12 2 15 15 O 1.42898 * 109.46887 * 297.68736 * 13 12 2 16 16 C 1.52996 * 109.46832 * 177.69385 * 13 12 2 17 17 N 1.46903 * 109.47270 * 184.99768 * 16 13 12 18 18 C 1.46898 * 111.00232 * 184.08141 * 17 16 13 19 19 H 1.08991 * 109.40511 * 323.31076 * 18 17 16 20 20 C 1.53071 * 109.43450 * 83.20841 * 18 17 16 21 21 C 1.53411 * 108.28937 * 168.33851 * 20 18 17 22 22 O 1.42822 * 108.39352 * 295.30515 * 21 20 18 23 23 C 1.35902 * 117.87110 * 49.14185 * 22 21 20 24 24 C 1.39126 * 118.47651 * 163.06944 * 23 22 21 25 25 C 1.37972 * 120.24956 * 179.76706 * 24 23 22 26 26 C 1.38480 * 119.93288 * 359.49402 * 25 24 23 27 27 F 1.35096 * 120.03376 * 180.35976 * 26 25 24 28 28 C 1.38285 * 119.92901 * 0.59484 * 26 25 24 29 29 C 1.38363 * 121.78862 * 342.74138 * 23 22 21 30 30 H 1.09005 * 109.46974 * 301.39782 * 1 2 3 31 31 H 1.08996 * 109.47433 * 61.39886 * 1 2 3 32 32 H 1.09002 * 109.47212 * 181.40354 * 1 2 3 33 33 H 1.08996 * 109.47173 * 53.96199 * 3 2 1 34 34 H 1.09001 * 109.47154 * 173.95778 * 3 2 1 35 35 H 0.97003 * 120.00042 * 179.97438 * 7 6 4 36 36 H 1.08994 * 109.47178 * 44.67931 * 12 2 1 37 37 H 1.08999 * 109.46890 * 284.67967 * 12 2 1 38 38 H 0.96702 * 114.00878 * 300.00409 * 15 13 12 39 39 H 1.09001 * 109.47790 * 64.99849 * 16 13 12 40 40 H 1.08997 * 109.47389 * 304.99795 * 16 13 12 41 41 H 1.00897 * 110.99632 * 308.04011 * 17 16 13 42 42 H 1.08991 * 109.70133 * 288.04022 * 20 18 17 43 43 H 1.09005 * 109.70055 * 48.64393 * 20 18 17 44 44 H 1.09000 * 109.67603 * 55.03603 * 21 20 18 45 45 H 1.09000 * 109.68051 * 175.54410 * 21 20 18 46 46 H 1.08000 * 119.87600 * 359.48444 * 24 23 22 47 47 H 1.08002 * 120.03233 * 179.75273 * 25 24 23 48 48 H 1.07999 * 119.85717 * 179.76200 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0738 1.5116 -2.0484 6 6 2.0275 3.3492 -1.5288 7 7 2.7127 4.0016 -0.6152 8 14 1.5825 4.1871 -3.1378 9 1 0.2706 4.8681 -2.9950 10 1 2.6250 5.1878 -3.4798 11 1 1.4979 3.1715 -4.2180 12 6 1.9955 -0.7661 1.1375 13 6 3.4772 -1.0696 0.9059 14 1 4.0225 -0.1357 0.7702 15 8 3.6205 -1.8791 -0.2629 16 6 4.0398 -1.8173 2.1163 17 7 5.4872 -2.0034 1.9476 18 6 6.0467 -2.8031 3.0455 19 1 5.5386 -2.5474 3.9752 20 6 5.8441 -4.2906 2.7467 21 6 6.6832 -5.1005 3.7436 22 8 8.0629 -4.8198 3.5039 23 6 8.4386 -3.5173 3.4065 24 6 9.7886 -3.2052 3.5323 25 6 10.2111 -1.8954 3.4348 26 6 9.2904 -0.8880 3.2004 27 9 9.7029 0.3944 3.0972 28 6 7.9478 -1.1953 3.0768 29 6 7.5191 -2.5084 3.1810 30 1 -0.3633 0.5354 0.8772 31 1 -0.3634 0.4919 -0.9022 32 1 -0.3634 -1.0274 0.0252 33 1 1.5612 1.9273 0.8310 34 1 3.0797 1.3444 0.1082 35 1 2.9880 4.9175 -0.7774 36 1 1.4436 -1.7011 1.2324 37 1 1.8826 -0.1831 2.0515 38 1 3.1598 -2.7279 -0.2125 39 1 3.5557 -2.7904 2.1995 40 1 3.8508 -1.2391 3.0207 41 1 5.6961 -2.4209 1.0531 42 1 4.7909 -4.5478 2.8588 43 1 6.1701 -4.5089 1.7297 44 1 6.4215 -4.8132 4.7620 45 1 6.4947 -6.1647 3.6025 46 1 10.5079 -3.9906 3.7116 47 1 11.2595 -1.6567 3.5370 48 1 7.2303 -0.4082 2.8979 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578859477.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:00 Heat of formation + Delta-G solvation = -124.650614 kcal Electronic energy + Delta-G solvation = -29413.533580 eV Core-core repulsion = 25189.017239 eV Total energy + Delta-G solvation = -4224.516341 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.82160 -41.78125 -39.61341 -38.28376 -37.76011 -36.63649 -34.61082 -33.23443 -31.65630 -31.07011 -30.41048 -29.29497 -27.22206 -25.73477 -24.89165 -24.62118 -23.43232 -22.85115 -21.72798 -21.17555 -18.83484 -18.64692 -18.46122 -17.97922 -17.44130 -17.12825 -16.71666 -16.55339 -16.39893 -16.24828 -15.84496 -15.81189 -15.54868 -15.21170 -15.09777 -14.82218 -14.54745 -14.29799 -13.99582 -13.87764 -13.86085 -13.77073 -13.33889 -13.09273 -12.98402 -12.89196 -12.62578 -12.58648 -12.48201 -12.31431 -12.21106 -12.16392 -11.76667 -11.50215 -11.47920 -11.31753 -10.76337 -10.60869 -10.00273 -9.39847 -9.08006 -8.95767 -8.20679 -6.30190 0.12275 0.21078 1.38686 1.41150 1.52618 2.25991 2.39744 2.51989 2.91927 3.11955 3.27034 3.37872 3.59734 3.63945 3.70556 3.77307 3.96381 3.99326 4.06220 4.14325 4.21769 4.34865 4.36303 4.41163 4.44434 4.53378 4.58490 4.62535 4.66855 4.77659 4.79835 4.85747 4.89717 5.02772 5.07525 5.11789 5.15375 5.18894 5.26427 5.30955 5.32022 5.64208 5.71169 5.99537 6.07044 6.32882 6.34686 6.40072 6.65261 6.85859 7.05849 7.39190 8.90427 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012648 B = 0.002609 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.333138 B =10727.581193 C =12470.830127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.543 5.543 3 C 0.209 3.791 4 C -0.522 4.522 5 H 0.061 0.939 6 C -0.001 4.001 7 N -0.935 5.935 8 Si 0.968 3.032 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.265 1.265 12 C 0.027 3.973 13 C 0.122 3.878 14 H 0.060 0.940 15 O -0.560 6.560 16 C 0.046 3.954 17 N -0.689 5.689 18 C 0.133 3.867 19 H 0.099 0.901 20 C -0.182 4.182 21 C 0.060 3.940 22 O -0.322 6.322 23 C 0.122 3.878 24 C -0.127 4.127 25 C -0.113 4.113 26 C 0.033 3.967 27 F -0.155 7.155 28 C -0.100 4.100 29 C -0.134 4.134 30 H 0.007 0.993 31 H 0.053 0.947 32 H 0.085 0.915 33 H -0.043 1.043 34 H 0.004 0.996 35 H 0.263 0.737 36 H 0.101 0.899 37 H 0.026 0.974 38 H 0.380 0.620 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.350 0.650 42 H 0.107 0.893 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.135 0.865 46 H 0.163 0.837 47 H 0.162 0.838 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.898 -22.781 12.759 27.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.267 5.267 3 C 0.083 3.917 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.199 4.199 7 N -0.576 5.576 8 Si 0.793 3.207 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.190 1.190 12 C -0.102 4.102 13 C 0.062 3.938 14 H 0.078 0.922 15 O -0.365 6.365 16 C -0.083 4.083 17 N -0.320 5.320 18 C 0.023 3.977 19 H 0.116 0.884 20 C -0.221 4.221 21 C -0.015 4.015 22 O -0.236 6.236 23 C 0.076 3.924 24 C -0.146 4.146 25 C -0.131 4.131 26 C 0.014 3.986 27 F -0.134 7.134 28 C -0.120 4.120 29 C -0.136 4.136 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.103 0.897 33 H -0.025 1.025 34 H 0.022 0.978 35 H 0.072 0.928 36 H 0.119 0.881 37 H 0.045 0.955 38 H 0.228 0.772 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.170 0.830 42 H 0.126 0.874 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.152 0.848 46 H 0.181 0.819 47 H 0.180 0.820 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.739 -21.849 12.423 26.954 hybrid contribution -1.133 0.856 -0.039 1.421 sum 8.607 -20.992 12.384 25.848 Atomic orbital electron populations 1.22218 0.87450 1.01199 0.99818 1.61943 1.07888 1.15078 1.41766 1.19374 0.93762 0.83960 0.94594 1.21476 1.34632 0.97420 1.02513 0.92102 1.25933 0.95073 0.98174 1.00715 1.70091 1.39408 1.11840 1.36237 0.85397 0.78000 0.78090 0.79239 1.19551 1.20828 1.18984 1.22789 0.96637 0.98958 0.91784 1.21721 0.93709 0.93510 0.84867 0.92157 1.86670 1.76145 1.33620 1.40108 1.22515 0.87618 1.00107 0.98098 1.60329 1.12723 1.53405 1.05583 1.20358 0.89893 0.91554 0.95879 0.88350 1.22949 1.03235 0.94996 1.00915 1.23221 0.77113 1.02259 0.98859 1.85996 1.29472 1.21174 1.86973 1.18880 0.93335 0.83234 0.96942 1.20674 0.93724 0.96541 1.03628 1.21165 1.00638 0.91157 1.00159 1.17908 0.93729 0.79047 1.07916 1.91461 1.91004 1.36694 1.94267 1.20959 0.94076 0.97739 0.99198 1.19736 0.96330 0.92066 1.05437 0.97416 0.92817 0.89691 1.02515 0.97810 0.92780 0.88105 0.95538 0.77215 0.91514 0.90304 0.83008 0.87415 0.90714 0.90497 0.84753 0.81929 0.82014 0.85316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.55 9.33 127.69 1.19 2.74 16 2 N -0.54 -23.24 4.62 -927.06 -4.28 -27.52 16 3 C 0.21 11.48 4.57 85.56 0.39 11.87 16 4 C -0.52 -30.68 8.53 25.60 0.22 -30.46 16 5 H 0.06 3.51 7.10 -2.91 -0.02 3.49 16 6 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 7 N -0.94 -58.29 13.29 21.45 0.28 -58.00 16 8 Si 0.97 45.85 29.54 68.60 2.03 47.87 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 C 0.03 0.88 4.62 86.31 0.40 1.28 16 13 C 0.12 3.79 3.21 30.59 0.10 3.89 16 14 H 0.06 2.54 6.50 -2.39 -0.02 2.53 16 15 O -0.56 -17.20 12.71 -148.98 -1.89 -19.09 16 16 C 0.05 0.98 5.16 86.30 0.45 1.43 16 17 N -0.69 -15.44 5.47 -495.22 -2.71 -18.15 16 18 C 0.13 2.34 2.59 44.22 0.11 2.45 16 19 H 0.10 1.61 7.87 -2.39 -0.02 1.59 16 20 C -0.18 -2.14 5.42 30.76 0.17 -1.97 16 21 C 0.06 0.62 7.03 72.12 0.51 1.12 16 22 O -0.32 -5.37 10.27 -92.45 -0.95 -6.32 16 23 C 0.12 2.37 6.47 22.51 0.15 2.52 16 24 C -0.13 -2.21 9.93 22.42 0.22 -1.98 16 25 C -0.11 -2.14 10.02 22.26 0.22 -1.92 16 26 C 0.03 0.84 7.30 22.34 0.16 1.00 16 27 F -0.16 -4.48 17.27 44.97 0.78 -3.70 16 28 C -0.10 -2.59 9.25 22.35 0.21 -2.39 16 29 C -0.13 -2.88 5.56 -19.74 -0.11 -2.99 16 30 H 0.01 0.28 8.13 -2.38 -0.02 0.26 16 31 H 0.05 2.20 6.90 -2.39 -0.02 2.19 16 32 H 0.08 2.44 7.98 -2.39 -0.02 2.42 16 33 H -0.04 -2.54 8.11 -2.39 -0.02 -2.56 16 34 H 0.00 0.23 6.33 -2.39 -0.02 0.22 16 35 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.10 2.42 7.89 -2.39 -0.02 2.40 16 37 H 0.03 0.89 8.06 -2.39 -0.02 0.87 16 38 H 0.38 7.77 9.05 -74.06 -0.67 7.10 16 39 H 0.07 0.98 7.47 -2.39 -0.02 0.96 16 40 H 0.08 1.72 8.13 -2.39 -0.02 1.70 16 41 H 0.35 8.26 7.82 -89.70 -0.70 7.56 16 42 H 0.11 0.82 7.64 -2.39 -0.02 0.80 16 43 H 0.07 1.04 7.92 -2.38 -0.02 1.02 16 44 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 47 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 48 H 0.13 3.76 7.69 -2.91 -0.02 3.74 16 Total: -1.00 -74.60 390.24 -2.29 -76.89 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -0.39 Total: 21.04 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: 4.84 Total: -13.02 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -6.71 Total: -103.67 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -2.84 Total: -25.41 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.78 Total: -3.70 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -74.60 -2.29 -76.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578859477.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.764 kcal (2) G-P(sol) polarization free energy of solvation -74.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds