Wall clock time and date at job start Tue Mar 31 2020 21:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 111.00324 * 2 1 4 4 C 1.50699 * 109.47146 * 293.95791 * 3 2 1 5 5 H 1.08005 * 119.99896 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00198 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99759 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00384 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46778 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46850 * 120.00221 * 8 6 4 11 11 H 1.48498 * 109.47337 * 240.00162 * 8 6 4 12 12 C 1.46904 * 111.00103 * 123.95631 * 2 1 3 13 13 C 1.53001 * 109.46857 * 66.04323 * 12 2 1 14 14 H 1.08998 * 109.47113 * 305.00026 * 13 12 2 15 15 O 1.42897 * 109.47257 * 65.00208 * 13 12 2 16 16 C 1.53002 * 109.46887 * 185.00332 * 13 12 2 17 17 N 1.46905 * 109.47213 * 180.02562 * 16 13 12 18 18 C 1.46891 * 111.00102 * 185.52005 * 17 16 13 19 19 H 1.09004 * 109.43481 * 324.68931 * 18 17 16 20 20 C 1.53070 * 109.43903 * 84.56573 * 18 17 16 21 21 C 1.53408 * 108.29138 * 168.33840 * 20 18 17 22 22 O 1.42822 * 108.39603 * 295.30826 * 21 20 18 23 23 C 1.35901 * 117.86910 * 49.14156 * 22 21 20 24 24 C 1.39123 * 118.47585 * 163.06967 * 23 22 21 25 25 C 1.37971 * 120.25407 * 179.76257 * 24 23 22 26 26 C 1.38482 * 119.93194 * 359.50297 * 25 24 23 27 27 F 1.35097 * 120.03952 * 180.36068 * 26 25 24 28 28 C 1.38295 * 119.92186 * 0.58327 * 26 25 24 29 29 C 1.38360 * 121.79016 * 342.74120 * 23 22 21 30 30 H 1.09003 * 109.46502 * 296.04459 * 1 2 3 31 31 H 1.09000 * 109.46872 * 56.04183 * 1 2 3 32 32 H 1.09000 * 109.47391 * 176.04401 * 1 2 3 33 33 H 1.09003 * 109.46862 * 53.95669 * 3 2 1 34 34 H 1.08994 * 109.47175 * 173.95493 * 3 2 1 35 35 H 0.97001 * 120.00387 * 180.02562 * 7 6 4 36 36 H 1.08997 * 109.46844 * 306.04390 * 12 2 1 37 37 H 1.08999 * 109.47268 * 186.04243 * 12 2 1 38 38 H 0.96701 * 114.00231 * 60.00120 * 15 13 12 39 39 H 1.08994 * 109.47395 * 59.99926 * 16 13 12 40 40 H 1.08998 * 109.46995 * 299.99767 * 16 13 12 41 41 H 1.00908 * 110.99783 * 61.56231 * 17 16 13 42 42 H 1.08995 * 109.69957 * 288.04309 * 20 18 17 43 43 H 1.09002 * 109.69576 * 48.64533 * 20 18 17 44 44 H 1.09003 * 109.67827 * 55.04279 * 21 20 18 45 45 H 1.08999 * 109.67877 * 175.54829 * 21 20 18 46 46 H 1.08008 * 119.87497 * 359.48760 * 24 23 22 47 47 H 1.08001 * 120.03677 * 179.75838 * 25 24 23 48 48 H 1.08006 * 119.84952 * 179.76352 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0472 -1.2984 5 1 1.0746 1.5113 -2.0488 6 6 2.0269 3.3494 -1.5284 7 7 2.7121 4.0018 -0.6149 8 14 1.5831 4.1869 -3.1381 9 1 0.8157 3.2443 -3.9913 10 1 0.7552 5.3878 -2.8595 11 1 2.8249 4.5944 -3.8430 12 6 1.9955 -0.7660 1.1376 13 6 1.6314 -2.2427 0.9702 14 1 0.5532 -2.3389 0.8432 15 8 2.2955 -2.7696 -0.1801 16 6 2.0699 -3.0200 2.2130 17 7 1.7209 -4.4379 2.0522 18 6 2.0079 -5.1931 3.2789 19 1 2.9040 -4.7906 3.7514 20 6 0.8251 -5.0682 4.2425 21 6 1.0153 -6.0877 5.3730 22 8 0.9491 -7.3997 4.8126 23 6 1.7027 -7.6591 3.7119 24 6 1.9357 -8.9862 3.3652 25 6 2.6917 -9.2915 2.2521 26 6 3.2125 -8.2740 1.4703 27 9 3.9469 -8.5705 0.3758 28 6 2.9838 -6.9541 1.8138 29 6 2.2310 -6.6439 2.9344 30 1 -0.3632 0.4512 0.9234 31 1 -0.3633 0.5740 -0.8524 32 1 -0.3634 -1.0252 -0.0709 33 1 1.5612 1.9273 0.8310 34 1 3.0798 1.3443 0.1082 35 1 2.9861 4.9182 -0.7765 36 1 1.5612 -0.3873 2.0628 37 1 3.0798 -0.6612 1.1756 38 1 3.2601 -2.7168 -0.1361 39 1 1.5634 -2.6181 3.0904 40 1 3.1482 -2.9238 2.3401 41 1 2.1987 -4.8402 1.2596 42 1 0.7940 -4.0609 4.6575 43 1 -0.1042 -5.2767 3.7124 44 1 1.9874 -5.9377 5.8428 45 1 0.2263 -5.9646 6.1148 46 1 1.5270 -9.7805 3.9723 47 1 2.8736 -10.3229 1.9885 48 1 3.3938 -6.1615 1.2053 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578859479.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:09 Heat of formation + Delta-G solvation = -97.904728 kcal Electronic energy + Delta-G solvation = -29099.813011 eV Core-core repulsion = 24876.456458 eV Total energy + Delta-G solvation = -4223.356553 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.10368 -41.20413 -38.44799 -37.73342 -36.61366 -35.37372 -32.59296 -32.36655 -31.17688 -30.30476 -29.38087 -27.13268 -26.22859 -24.93110 -24.22088 -23.45055 -22.47671 -21.32817 -20.47376 -20.15160 -18.53072 -17.76465 -17.37075 -16.58016 -16.20593 -16.05056 -15.97737 -15.59895 -15.29990 -15.19530 -14.97424 -14.72001 -14.61119 -14.14066 -14.08751 -13.75640 -13.56762 -13.42829 -13.28049 -13.15578 -12.61937 -12.38119 -12.25109 -11.92631 -11.71147 -11.48259 -11.34337 -11.20268 -11.12010 -10.89805 -10.89592 -10.77377 -10.67292 -10.30972 -10.03610 -9.65012 -9.54172 -9.12679 -8.73640 -8.44753 -8.38985 -7.21190 -6.03670 -4.04468 0.69644 0.81066 2.81018 3.11321 3.31053 3.38406 3.44226 3.73347 3.84685 4.08946 4.19642 4.34374 4.41821 4.54013 4.61444 4.65350 4.75985 4.82660 4.92020 4.94715 5.07809 5.09819 5.15261 5.27053 5.33372 5.37799 5.40729 5.48075 5.59329 5.67261 5.68784 5.74207 5.76208 5.86756 6.02576 6.18229 6.29334 6.31215 6.38446 6.68584 6.77500 6.96074 7.09717 7.25493 7.31143 7.79705 7.92383 8.08592 8.19133 8.54366 9.03978 9.59896 11.07358 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019744 B = 0.002038 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.824295 B =13737.424632 C =14728.092193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.530 5.530 3 C 0.193 3.807 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.025 3.975 13 C 0.115 3.885 14 H 0.105 0.895 15 O -0.545 6.545 16 C 0.025 3.975 17 N -0.674 5.674 18 C 0.130 3.870 19 H 0.060 0.940 20 C -0.150 4.150 21 C 0.061 3.939 22 O -0.313 6.313 23 C 0.133 3.867 24 C -0.121 4.121 25 C -0.118 4.118 26 C 0.070 3.930 27 F -0.139 7.139 28 C -0.115 4.115 29 C -0.130 4.130 30 H 0.008 0.992 31 H 0.075 0.925 32 H 0.048 0.952 33 H -0.011 1.011 34 H 0.028 0.972 35 H 0.260 0.740 36 H 0.028 0.972 37 H 0.068 0.932 38 H 0.366 0.634 39 H 0.080 0.920 40 H 0.034 0.966 41 H 0.351 0.649 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.065 0.935 45 H 0.113 0.887 46 H 0.142 0.858 47 H 0.142 0.858 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.382 -25.661 13.841 29.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.254 5.254 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.083 0.917 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.104 4.104 13 C 0.055 3.945 14 H 0.122 0.878 15 O -0.348 6.348 16 C -0.105 4.105 17 N -0.309 5.309 18 C 0.021 3.979 19 H 0.078 0.922 20 C -0.188 4.188 21 C -0.014 4.014 22 O -0.226 6.226 23 C 0.087 3.913 24 C -0.140 4.140 25 C -0.137 4.137 26 C 0.050 3.950 27 F -0.117 7.117 28 C -0.134 4.134 29 C -0.131 4.131 30 H 0.027 0.973 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.007 0.993 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.212 0.788 39 H 0.099 0.901 40 H 0.053 0.947 41 H 0.174 0.826 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.131 0.869 46 H 0.160 0.840 47 H 0.160 0.840 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.514 -25.835 13.443 29.163 hybrid contribution 1.361 1.387 -0.074 1.945 sum -0.152 -24.447 13.369 27.865 Atomic orbital electron populations 1.22265 0.88924 0.99674 1.00419 1.62024 1.06892 1.17420 1.39058 1.19746 0.95223 0.81621 0.96664 1.21210 1.34577 0.96813 1.01662 0.91718 1.25003 0.95337 0.97381 0.97057 1.69969 1.38604 1.11387 1.34096 0.86431 0.78160 0.79269 0.83522 1.19593 1.21145 1.21009 1.22711 1.00378 0.93842 0.93513 1.21986 0.98385 0.90605 0.83481 0.87755 1.86630 1.22728 1.83807 1.41680 1.22790 0.98637 0.88635 1.00410 1.60469 1.64032 1.02062 1.04301 1.20287 0.97057 0.88463 0.92136 0.92209 1.22291 0.99961 1.00311 0.96284 1.23057 1.03121 0.79841 0.95379 1.86007 1.62508 1.33448 1.40679 1.18644 0.92165 0.92890 0.87623 1.20434 1.00856 0.94257 0.98447 1.20945 0.98496 0.99428 0.94864 1.17446 0.97446 0.93378 0.86715 1.91514 1.74897 1.94022 1.51299 1.20817 0.99739 0.95414 0.97469 1.19673 1.01639 0.95202 0.96607 0.97318 0.90658 0.93357 0.99312 0.95433 0.93021 0.95361 0.91321 0.78844 0.90141 0.94743 0.82609 0.89562 0.89068 0.91700 0.86940 0.84046 0.83994 0.84497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 9.14 60.07 0.55 1.26 16 2 N -0.53 -11.41 4.70 -244.36 -1.15 -12.56 16 3 C 0.19 5.02 4.72 -4.98 -0.02 5.00 16 4 C -0.50 -14.29 8.46 -34.44 -0.29 -14.58 16 5 H 0.06 1.84 7.12 -52.48 -0.37 1.46 16 6 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 7 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 8 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 12 C 0.03 0.43 4.60 -3.82 -0.02 0.41 16 13 C 0.12 1.59 3.19 -26.73 -0.09 1.51 16 14 H 0.10 1.58 6.34 -51.93 -0.33 1.26 16 15 O -0.54 -8.06 12.73 -35.23 -0.45 -8.51 16 16 C 0.03 0.26 5.16 -3.82 -0.02 0.24 16 17 N -0.67 -6.89 6.26 -107.88 -0.68 -7.56 16 18 C 0.13 1.14 2.65 -68.80 -0.18 0.96 16 19 H 0.06 0.50 7.86 -51.93 -0.41 0.09 16 20 C -0.15 -1.14 5.58 -26.48 -0.15 -1.29 16 21 C 0.06 0.39 7.03 37.37 0.26 0.66 16 22 O -0.31 -2.77 10.27 -19.43 -0.20 -2.97 16 23 C 0.13 1.23 6.47 -39.21 -0.25 0.98 16 24 C -0.12 -0.97 9.93 -39.35 -0.39 -1.36 16 25 C -0.12 -0.94 10.02 -39.59 -0.40 -1.34 16 26 C 0.07 0.67 7.30 -39.47 -0.29 0.38 16 27 F -0.14 -1.48 17.27 2.25 0.04 -1.44 16 28 C -0.12 -1.09 8.91 -39.46 -0.35 -1.44 16 29 C -0.13 -1.22 5.56 -104.44 -0.58 -1.80 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 32 H 0.05 0.84 6.37 -51.93 -0.33 0.51 16 33 H -0.01 -0.30 8.12 -51.93 -0.42 -0.73 16 34 H 0.03 0.76 7.93 -51.93 -0.41 0.35 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 37 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 38 H 0.37 4.30 9.05 45.56 0.41 4.71 16 39 H 0.08 0.80 7.53 -51.93 -0.39 0.41 16 40 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.35 3.69 5.71 -39.29 -0.22 3.47 16 42 H 0.09 0.57 7.69 -51.93 -0.40 0.17 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 47 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 48 H 0.14 1.20 6.59 -52.48 -0.35 0.85 16 LS Contribution 387.83 15.07 5.84 5.84 Total: -1.00 -32.35 387.83 -9.69 -42.04 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.50 Total: 3.44 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -2.31 Total: -9.00 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -1.09 Total: -46.21 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -0.65 Total: -11.48 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.35 -9.69 -42.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578859479.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.862 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds