Wall clock time and date at job start Tue Mar 31 2020 21:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 111.00324 * 2 1 4 4 C 1.50699 * 109.47146 * 293.95791 * 3 2 1 5 5 H 1.08005 * 119.99896 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00198 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99759 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00384 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46778 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46850 * 120.00221 * 8 6 4 11 11 H 1.48498 * 109.47337 * 240.00162 * 8 6 4 12 12 C 1.46904 * 111.00103 * 123.95631 * 2 1 3 13 13 C 1.53001 * 109.46857 * 66.04323 * 12 2 1 14 14 H 1.08998 * 109.47113 * 305.00026 * 13 12 2 15 15 O 1.42897 * 109.47257 * 65.00208 * 13 12 2 16 16 C 1.53002 * 109.46887 * 185.00332 * 13 12 2 17 17 N 1.46905 * 109.47213 * 180.02562 * 16 13 12 18 18 C 1.46891 * 111.00102 * 185.52005 * 17 16 13 19 19 H 1.09004 * 109.43481 * 324.68931 * 18 17 16 20 20 C 1.53070 * 109.43903 * 84.56573 * 18 17 16 21 21 C 1.53408 * 108.29138 * 168.33840 * 20 18 17 22 22 O 1.42822 * 108.39603 * 295.30826 * 21 20 18 23 23 C 1.35901 * 117.86910 * 49.14156 * 22 21 20 24 24 C 1.39123 * 118.47585 * 163.06967 * 23 22 21 25 25 C 1.37971 * 120.25407 * 179.76257 * 24 23 22 26 26 C 1.38482 * 119.93194 * 359.50297 * 25 24 23 27 27 F 1.35097 * 120.03952 * 180.36068 * 26 25 24 28 28 C 1.38295 * 119.92186 * 0.58327 * 26 25 24 29 29 C 1.38360 * 121.79016 * 342.74120 * 23 22 21 30 30 H 1.09003 * 109.46502 * 296.04459 * 1 2 3 31 31 H 1.09000 * 109.46872 * 56.04183 * 1 2 3 32 32 H 1.09000 * 109.47391 * 176.04401 * 1 2 3 33 33 H 1.09003 * 109.46862 * 53.95669 * 3 2 1 34 34 H 1.08994 * 109.47175 * 173.95493 * 3 2 1 35 35 H 0.97001 * 120.00387 * 180.02562 * 7 6 4 36 36 H 1.08997 * 109.46844 * 306.04390 * 12 2 1 37 37 H 1.08999 * 109.47268 * 186.04243 * 12 2 1 38 38 H 0.96701 * 114.00231 * 60.00120 * 15 13 12 39 39 H 1.08994 * 109.47395 * 59.99926 * 16 13 12 40 40 H 1.08998 * 109.46995 * 299.99767 * 16 13 12 41 41 H 1.00908 * 110.99783 * 61.56231 * 17 16 13 42 42 H 1.08995 * 109.69957 * 288.04309 * 20 18 17 43 43 H 1.09002 * 109.69576 * 48.64533 * 20 18 17 44 44 H 1.09003 * 109.67827 * 55.04279 * 21 20 18 45 45 H 1.08999 * 109.67877 * 175.54829 * 21 20 18 46 46 H 1.08008 * 119.87497 * 359.48760 * 24 23 22 47 47 H 1.08001 * 120.03677 * 179.75838 * 25 24 23 48 48 H 1.08006 * 119.84952 * 179.76352 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0472 -1.2984 5 1 1.0746 1.5113 -2.0488 6 6 2.0269 3.3494 -1.5284 7 7 2.7121 4.0018 -0.6149 8 14 1.5831 4.1869 -3.1381 9 1 0.8157 3.2443 -3.9913 10 1 0.7552 5.3878 -2.8595 11 1 2.8249 4.5944 -3.8430 12 6 1.9955 -0.7660 1.1376 13 6 1.6314 -2.2427 0.9702 14 1 0.5532 -2.3389 0.8432 15 8 2.2955 -2.7696 -0.1801 16 6 2.0699 -3.0200 2.2130 17 7 1.7209 -4.4379 2.0522 18 6 2.0079 -5.1931 3.2789 19 1 2.9040 -4.7906 3.7514 20 6 0.8251 -5.0682 4.2425 21 6 1.0153 -6.0877 5.3730 22 8 0.9491 -7.3997 4.8126 23 6 1.7027 -7.6591 3.7119 24 6 1.9357 -8.9862 3.3652 25 6 2.6917 -9.2915 2.2521 26 6 3.2125 -8.2740 1.4703 27 9 3.9469 -8.5705 0.3758 28 6 2.9838 -6.9541 1.8138 29 6 2.2310 -6.6439 2.9344 30 1 -0.3632 0.4512 0.9234 31 1 -0.3633 0.5740 -0.8524 32 1 -0.3634 -1.0252 -0.0709 33 1 1.5612 1.9273 0.8310 34 1 3.0798 1.3443 0.1082 35 1 2.9861 4.9182 -0.7765 36 1 1.5612 -0.3873 2.0628 37 1 3.0798 -0.6612 1.1756 38 1 3.2601 -2.7168 -0.1361 39 1 1.5634 -2.6181 3.0904 40 1 3.1482 -2.9238 2.3401 41 1 2.1987 -4.8402 1.2596 42 1 0.7940 -4.0609 4.6575 43 1 -0.1042 -5.2767 3.7124 44 1 1.9874 -5.9377 5.8428 45 1 0.2263 -5.9646 6.1148 46 1 1.5270 -9.7805 3.9723 47 1 2.8736 -10.3229 1.9885 48 1 3.3938 -6.1615 1.2053 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578859479.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:08 Heat of formation + Delta-G solvation = -122.202539 kcal Electronic energy + Delta-G solvation = -29100.866643 eV Core-core repulsion = 24876.456458 eV Total energy + Delta-G solvation = -4224.410185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.86085 -41.83458 -39.63041 -38.36880 -37.74098 -36.65467 -34.63275 -33.23479 -31.78257 -31.07723 -30.58012 -28.99113 -27.53097 -25.97321 -25.10804 -24.48161 -23.34794 -22.56960 -21.82550 -21.04512 -19.18298 -18.58834 -18.44439 -18.03001 -17.28369 -17.23975 -16.71973 -16.69409 -16.33134 -16.23616 -15.96944 -15.83718 -15.60434 -15.34878 -15.23383 -14.98078 -14.47929 -14.32787 -14.11414 -13.93342 -13.91596 -13.77537 -13.33488 -13.21245 -12.93694 -12.78618 -12.59570 -12.56216 -12.41400 -12.33538 -12.10221 -11.99331 -11.77410 -11.63258 -11.53378 -11.38565 -10.73575 -10.63510 -10.20189 -9.48241 -9.06864 -8.96403 -8.22114 -6.31625 0.05724 0.13369 1.39754 1.40626 1.54480 2.23351 2.39190 2.46714 2.87298 3.10366 3.18335 3.38669 3.45558 3.56277 3.68081 3.78053 3.92555 4.01492 4.04880 4.10563 4.17902 4.27023 4.33549 4.38059 4.42936 4.52089 4.55113 4.63379 4.67032 4.72628 4.76946 4.78225 4.89990 5.03213 5.05802 5.11434 5.13795 5.15213 5.16764 5.23033 5.31773 5.64043 5.65592 5.92072 6.04607 6.28842 6.31490 6.35620 6.63264 6.84628 6.94326 7.38117 8.88965 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019744 B = 0.002038 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.824295 B =13737.424632 C =14728.092193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.542 5.542 3 C 0.208 3.792 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.001 3.999 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.266 1.266 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.025 3.975 13 C 0.129 3.871 14 H 0.093 0.907 15 O -0.562 6.562 16 C 0.037 3.963 17 N -0.682 5.682 18 C 0.131 3.869 19 H 0.068 0.932 20 C -0.147 4.147 21 C 0.059 3.941 22 O -0.322 6.322 23 C 0.123 3.877 24 C -0.123 4.123 25 C -0.113 4.113 26 C 0.049 3.951 27 F -0.149 7.149 28 C -0.123 4.123 29 C -0.140 4.140 30 H 0.013 0.987 31 H 0.053 0.947 32 H 0.075 0.925 33 H -0.038 1.038 34 H 0.004 0.996 35 H 0.264 0.736 36 H 0.036 0.964 37 H 0.068 0.932 38 H 0.378 0.622 39 H 0.091 0.909 40 H 0.046 0.954 41 H 0.348 0.652 42 H 0.098 0.902 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.135 0.865 46 H 0.163 0.837 47 H 0.165 0.835 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.877 -26.823 14.445 30.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.266 5.266 3 C 0.082 3.918 4 C -0.560 4.560 5 H 0.078 0.922 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.793 3.207 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.203 1.203 12 C -0.104 4.104 13 C 0.069 3.931 14 H 0.111 0.889 15 O -0.367 6.367 16 C -0.093 4.093 17 N -0.316 5.316 18 C 0.022 3.978 19 H 0.085 0.915 20 C -0.185 4.185 21 C -0.016 4.016 22 O -0.237 6.237 23 C 0.077 3.923 24 C -0.141 4.141 25 C -0.132 4.132 26 C 0.029 3.971 27 F -0.128 7.128 28 C -0.143 4.143 29 C -0.141 4.141 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.093 0.907 33 H -0.020 1.020 34 H 0.022 0.978 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.226 0.774 39 H 0.109 0.891 40 H 0.064 0.936 41 H 0.170 0.830 42 H 0.117 0.883 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.152 0.848 46 H 0.180 0.820 47 H 0.182 0.818 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.010 -27.019 14.063 30.526 hybrid contribution 1.516 1.691 -0.205 2.280 sum -0.494 -25.328 13.858 28.875 Atomic orbital electron populations 1.22226 0.87879 1.01017 0.99684 1.61928 1.07956 1.14921 1.41785 1.19390 0.93635 0.83914 0.94895 1.21496 1.34692 0.97447 1.02403 0.92217 1.25905 0.95061 0.98065 1.00697 1.70080 1.39431 1.11876 1.36095 0.85340 0.78108 0.78175 0.79039 1.18975 1.20282 1.20309 1.22824 1.00247 0.95211 0.92114 1.21795 0.97726 0.88801 0.84798 0.88870 1.86590 1.24010 1.83721 1.42418 1.22592 0.99374 0.88542 0.98746 1.60457 1.64255 1.01890 1.04979 1.20342 0.97885 0.87986 0.91618 0.91457 1.22265 0.98524 1.01428 0.96298 1.23274 1.04687 0.78460 0.95170 1.85996 1.62445 1.34712 1.40500 1.18877 0.92120 0.93410 0.87857 1.20725 1.00446 0.94463 0.98471 1.21206 0.97537 1.00178 0.94241 1.17705 0.98277 0.94044 0.87033 1.91482 1.75299 1.94103 1.51918 1.20900 1.00017 0.95580 0.97762 1.19758 1.01962 0.95653 0.96773 0.96871 0.92767 0.90661 1.02026 0.97762 0.92669 0.94631 0.91341 0.77389 0.89061 0.93595 0.82953 0.88333 0.90748 0.90533 0.84753 0.81988 0.81772 0.84424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.58 9.14 127.69 1.17 2.75 16 2 N -0.54 -23.48 4.70 -927.03 -4.36 -27.84 16 3 C 0.21 11.15 4.72 85.56 0.40 11.55 16 4 C -0.52 -30.09 8.46 25.60 0.22 -29.87 16 5 H 0.06 3.43 7.12 -2.91 -0.02 3.41 16 6 C 0.00 0.03 5.46 84.65 0.46 0.49 16 7 N -0.93 -56.35 13.29 21.45 0.28 -56.06 16 8 Si 0.97 44.85 29.54 68.60 2.03 46.87 16 9 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.03 0.83 4.60 86.30 0.40 1.23 16 13 C 0.13 3.41 3.19 30.60 0.10 3.50 16 14 H 0.09 2.70 6.34 -2.39 -0.02 2.69 16 15 O -0.56 -16.12 12.73 -148.98 -1.90 -18.02 16 16 C 0.04 0.72 5.16 86.30 0.45 1.16 16 17 N -0.68 -13.03 6.26 -495.21 -3.10 -16.13 16 18 C 0.13 2.10 2.65 44.22 0.12 2.21 16 19 H 0.07 0.98 7.86 -2.38 -0.02 0.96 16 20 C -0.15 -1.97 5.58 30.75 0.17 -1.80 16 21 C 0.06 0.62 7.03 72.12 0.51 1.13 16 22 O -0.32 -5.14 10.27 -92.43 -0.95 -6.09 16 23 C 0.12 2.11 6.47 22.51 0.15 2.26 16 24 C -0.12 -1.75 9.93 22.42 0.22 -1.52 16 25 C -0.11 -1.64 10.02 22.26 0.22 -1.41 16 26 C 0.05 0.91 7.30 22.34 0.16 1.08 16 27 F -0.15 -3.17 17.27 44.97 0.78 -2.40 16 28 C -0.12 -2.29 8.91 22.35 0.20 -2.09 16 29 C -0.14 -2.49 5.56 -19.75 -0.11 -2.60 16 30 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 2.34 6.76 -2.39 -0.02 2.32 16 32 H 0.07 2.54 6.37 -2.39 -0.02 2.53 16 33 H -0.04 -2.19 8.12 -2.39 -0.02 -2.21 16 34 H 0.00 0.25 7.93 -2.39 -0.02 0.23 16 35 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 36 H 0.04 1.14 8.12 -2.39 -0.02 1.12 16 37 H 0.07 2.25 7.93 -2.39 -0.02 2.23 16 38 H 0.38 8.58 9.05 -74.06 -0.67 7.91 16 39 H 0.09 1.59 7.53 -2.39 -0.02 1.57 16 40 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.35 7.03 5.71 -89.69 -0.51 6.52 16 42 H 0.10 1.06 7.69 -2.39 -0.02 1.04 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 47 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 48 H 0.14 2.41 6.59 -2.91 -0.02 2.39 16 Total: -1.00 -69.90 387.83 -2.58 -72.49 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -0.19 Total: 19.09 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: 4.83 Total: -11.92 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -7.18 Total: -100.03 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -2.85 Total: -24.10 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -69.90 -2.58 -72.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578859479.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.716 kcal (2) G-P(sol) polarization free energy of solvation -69.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds