Wall clock time and date at job start Tue Mar 31 2020 21:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46492 * 109.47179 * 2 1 4 4 C 1.46501 * 119.99993 * 269.99787 * 3 2 1 5 5 C 1.50705 * 109.47223 * 269.99921 * 4 3 2 6 6 H 1.08000 * 119.99951 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99997 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99920 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00051 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46924 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47509 * 119.99828 * 9 7 5 12 12 H 1.48506 * 109.47080 * 240.00167 * 9 7 5 13 13 C 1.34780 * 120.00371 * 90.00174 * 3 2 1 14 14 O 1.21276 * 120.00412 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99303 * 359.97438 * 13 3 2 16 16 N 1.46908 * 109.46831 * 180.02562 * 15 13 3 17 17 C 1.46890 * 110.99979 * 176.23889 * 16 15 13 18 18 H 1.08997 * 109.47716 * 321.61441 * 17 16 15 19 19 C 1.53008 * 109.47432 * 81.61419 * 17 16 15 20 20 C 1.53002 * 109.46639 * 59.21958 * 19 17 16 21 21 O 1.42903 * 109.47117 * 185.10451 * 20 19 17 22 22 C 1.50701 * 109.47243 * 201.61351 * 17 16 15 23 23 C 1.38223 * 120.01159 * 339.97803 * 22 17 16 24 24 C 1.38225 * 120.02168 * 180.02562 * 23 22 17 25 25 C 1.38262 * 120.05449 * 0.02562 * 24 23 22 26 26 C 1.38171 * 120.02564 * 359.97438 * 25 24 23 27 27 C 1.38441 * 120.01453 * 159.99831 * 22 17 16 28 28 F 1.35101 * 120.02329 * 359.96259 * 27 22 17 29 29 H 1.09002 * 109.47015 * 300.00156 * 1 2 3 30 30 H 1.09009 * 109.46956 * 59.99717 * 1 2 3 31 31 H 1.08992 * 109.47476 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47015 * 239.99844 * 2 1 3 33 33 H 1.08996 * 109.46848 * 119.99998 * 2 1 3 34 34 H 1.08992 * 109.47417 * 30.00426 * 4 3 2 35 35 H 1.09004 * 109.46926 * 150.00312 * 4 3 2 36 36 H 0.97000 * 119.99649 * 179.97438 * 8 7 5 37 37 H 1.08994 * 109.47815 * 60.00027 * 15 13 3 38 38 H 1.08997 * 109.47093 * 299.99670 * 15 13 3 39 39 H 1.00898 * 111.00181 * 52.28389 * 16 15 13 40 40 H 1.08993 * 109.47253 * 179.21794 * 19 17 16 41 41 H 1.09000 * 109.46775 * 299.22612 * 19 17 16 42 42 H 1.09001 * 109.47359 * 305.10488 * 20 19 17 43 43 H 1.08999 * 109.47074 * 65.11195 * 20 19 17 44 44 H 0.96694 * 114.00248 * 179.97438 * 21 20 19 45 45 H 1.07997 * 119.98615 * 0.02562 * 23 22 17 46 46 H 1.07999 * 119.96717 * 180.02562 * 24 23 22 47 47 H 1.08002 * 119.98498 * 180.27708 * 25 24 23 48 48 H 1.08005 * 120.01260 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1492 2.3895 -2.8779 8 7 3.3492 3.1256 -3.6181 9 14 5.9132 2.0954 -3.4175 10 1 6.6009 1.2404 -2.4168 11 1 5.9203 1.4162 -4.7380 12 1 6.6211 3.3964 -3.5262 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9913 1.3062 2.4723 16 7 2.3091 2.2064 3.5889 17 6 1.9911 1.5785 4.8782 18 1 1.0692 1.0045 4.7853 19 6 3.1333 0.6461 5.2869 20 6 4.4313 1.4483 5.3985 21 8 5.5190 0.5601 5.6634 22 6 1.8145 2.6462 5.9270 23 6 2.3448 3.9068 5.7263 24 6 2.1834 4.8861 6.6884 25 6 1.4921 4.6059 7.8525 26 6 0.9612 3.3465 8.0553 27 6 1.1216 2.3647 7.0919 28 9 0.6026 1.1330 7.2889 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5818 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 3.6753 3.5160 -4.4440 37 1 2.6211 0.4185 2.5303 38 1 0.9432 1.0126 2.5298 39 1 1.8310 3.0893 3.4890 40 1 2.9036 0.1908 6.2502 41 1 3.2520 -0.1342 4.5352 42 1 4.6135 1.9768 4.4628 43 1 4.3444 2.1688 6.2118 44 1 6.3756 1.0010 5.7464 45 1 2.8853 4.1266 4.8176 46 1 2.5977 5.8709 6.5305 47 1 1.3628 5.3732 8.6015 48 1 0.4215 3.1277 8.9649 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592160961.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:51 Heat of formation + Delta-G solvation = -102.529669 kcal Electronic energy + Delta-G solvation = -29927.619156 eV Core-core repulsion = 25704.062050 eV Total energy + Delta-G solvation = -4223.557105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.12384 -39.91889 -39.00770 -37.31888 -36.03103 -35.22258 -32.87208 -32.06728 -30.88732 -30.15174 -30.08164 -27.93765 -26.17617 -24.86325 -23.05720 -22.92594 -22.66052 -22.07031 -20.10883 -18.60203 -17.78950 -17.45173 -17.01750 -16.58643 -16.38759 -15.94452 -15.87844 -15.65084 -15.36716 -14.88465 -14.59381 -14.47370 -14.24759 -14.01552 -13.70877 -13.40188 -13.29332 -13.15709 -12.91484 -12.67312 -12.51728 -12.22033 -12.03722 -11.93344 -11.87238 -11.59860 -11.53147 -11.25371 -11.18008 -10.89152 -10.79641 -10.69882 -10.52846 -10.11914 -9.89541 -9.60473 -9.19511 -8.97223 -8.85853 -8.47956 -8.42942 -7.65868 -6.03665 -4.07964 0.87661 0.95743 3.30624 3.32120 3.37057 3.39588 3.45292 3.63416 4.01684 4.14685 4.24597 4.32665 4.46673 4.56532 4.73267 4.96805 5.00308 5.08908 5.09212 5.22153 5.26494 5.31042 5.31923 5.37997 5.49436 5.58489 5.62094 5.64113 5.75095 5.77142 5.80029 5.86468 5.99430 6.02352 6.08353 6.11401 6.18126 6.22131 6.45984 6.62892 6.79446 7.10160 7.28776 7.44421 7.55821 7.64975 7.93279 8.24562 8.42600 8.91627 9.10145 9.57295 11.04441 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013520 B = 0.002818 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.567731 B = 9935.138558 C =10284.861226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.597 5.597 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.506 3.494 14 O -0.531 6.531 15 C 0.039 3.961 16 N -0.665 5.665 17 C 0.132 3.868 18 H 0.062 0.938 19 C -0.101 4.101 20 C 0.080 3.920 21 O -0.581 6.581 22 C -0.120 4.120 23 C -0.078 4.078 24 C -0.128 4.128 25 C -0.094 4.094 26 C -0.156 4.156 27 C 0.102 3.898 28 F -0.138 7.138 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.031 0.969 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.098 0.902 38 H 0.055 0.945 39 H 0.355 0.645 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.038 0.962 44 H 0.377 0.623 45 H 0.149 0.851 46 H 0.131 0.869 47 H 0.131 0.869 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.663 -2.380 22.429 23.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.330 5.330 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.291 3.709 14 O -0.407 6.407 15 C -0.093 4.093 16 N -0.299 5.299 17 C 0.022 3.978 18 H 0.080 0.920 19 C -0.139 4.139 20 C 0.002 3.998 21 O -0.387 6.387 22 C -0.121 4.121 23 C -0.096 4.096 24 C -0.146 4.146 25 C -0.113 4.113 26 C -0.175 4.175 27 C 0.082 3.918 28 F -0.117 7.117 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.176 0.824 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.056 0.944 44 H 0.224 0.776 45 H 0.166 0.834 46 H 0.149 0.851 47 H 0.148 0.852 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.307 -2.328 22.216 22.959 hybrid contribution 0.247 0.028 -0.338 0.419 sum -5.060 -2.300 21.878 22.573 Atomic orbital electron populations 1.22222 0.96871 1.01414 1.02203 1.21412 0.93406 0.84299 1.02731 1.48242 1.63814 1.13234 1.07700 1.19257 0.96273 0.93570 0.78073 1.21480 0.96923 1.31705 1.06150 0.92392 1.24935 0.97843 0.94956 0.96414 1.69945 1.35586 1.33607 1.14354 0.86450 0.84683 0.78055 0.78285 1.19764 1.21019 1.20897 1.20115 0.78845 0.87064 0.84846 1.90663 1.45150 1.17985 1.86940 1.21990 1.00109 0.96947 0.90263 1.60311 1.63747 1.06555 0.99305 1.20292 0.97295 0.92631 0.87611 0.91995 1.21426 0.92926 0.97634 1.01934 1.22157 0.86038 0.91413 1.00182 1.86409 1.18868 1.38235 1.95160 1.19961 1.00319 0.96597 0.95229 1.21191 0.97303 0.91149 0.99993 1.21292 0.99542 0.99913 0.93897 1.21039 0.96751 0.95799 0.97670 1.21100 1.03461 0.93459 0.99499 1.17525 0.98053 0.80718 0.95466 1.91491 1.84708 1.40303 1.95180 0.93269 0.92016 0.92156 0.89883 0.91795 0.95091 0.93954 0.92820 0.88435 0.92718 0.82377 0.91335 0.90563 0.91247 0.94404 0.77634 0.83353 0.85118 0.85154 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.16 0.38 -1.84 16 2 C 0.11 1.66 5.93 -4.05 -0.02 1.64 16 3 N -0.60 -12.32 2.46 -175.06 -0.43 -12.75 16 4 C 0.25 6.39 5.16 -5.19 -0.03 6.37 16 5 C -0.52 -14.81 9.39 -34.44 -0.32 -15.14 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.58 13.29 55.43 0.74 -25.85 16 9 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.51 10.13 7.70 -10.98 -0.08 10.05 16 14 O -0.53 -12.83 15.70 5.56 0.09 -12.75 16 15 C 0.04 0.56 4.54 -4.97 -0.02 0.54 16 16 N -0.66 -8.91 4.32 -109.22 -0.47 -9.38 16 17 C 0.13 1.50 2.24 -68.87 -0.15 1.35 16 18 H 0.06 0.69 7.60 -51.93 -0.39 0.30 16 19 C -0.10 -1.20 5.38 -26.73 -0.14 -1.34 16 20 C 0.08 0.97 6.42 37.16 0.24 1.21 16 21 O -0.58 -7.27 13.66 -35.23 -0.48 -7.75 16 22 C -0.12 -1.29 4.13 -104.55 -0.43 -1.72 16 23 C -0.08 -0.79 8.08 -39.59 -0.32 -1.11 16 24 C -0.13 -1.09 10.04 -39.58 -0.40 -1.48 16 25 C -0.09 -0.73 10.04 -39.60 -0.40 -1.13 16 26 C -0.16 -1.36 10.03 -39.52 -0.40 -1.76 16 27 C 0.10 1.08 7.24 -39.42 -0.29 0.79 16 28 F -0.14 -1.57 16.66 2.25 0.04 -1.53 16 29 H 0.05 0.61 7.22 -51.93 -0.37 0.24 16 30 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 33 H 0.06 0.84 6.44 -51.93 -0.33 0.51 16 34 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.10 1.34 6.60 -51.93 -0.34 1.00 16 38 H 0.05 0.68 7.02 -51.93 -0.36 0.32 16 39 H 0.35 4.93 6.75 -39.29 -0.27 4.66 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 0.94 7.34 -51.93 -0.38 0.56 16 42 H 0.07 0.95 7.42 -51.93 -0.39 0.56 16 43 H 0.04 0.43 6.99 -51.93 -0.36 0.07 16 44 H 0.38 3.13 9.12 45.56 0.42 3.54 16 45 H 0.15 1.62 6.77 -52.49 -0.36 1.26 16 46 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 47 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 48 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 LS Contribution 396.52 15.07 5.98 5.98 Total: -1.00 -33.93 396.52 -8.50 -42.43 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.45 Total: 6.62 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -2.49 Total: -1.95 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -0.17 Total: -47.98 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.39 Total: -20.49 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.93 -8.50 -42.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592160961.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.095 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds