Wall clock time and date at job start Tue Mar 31 2020 21:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46492 * 109.47179 * 2 1 4 4 C 1.46501 * 119.99993 * 269.99787 * 3 2 1 5 5 C 1.50705 * 109.47223 * 269.99921 * 4 3 2 6 6 H 1.08000 * 119.99951 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99997 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99920 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00051 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46924 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47509 * 119.99828 * 9 7 5 12 12 H 1.48506 * 109.47080 * 240.00167 * 9 7 5 13 13 C 1.34780 * 120.00371 * 90.00174 * 3 2 1 14 14 O 1.21276 * 120.00412 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99303 * 359.97438 * 13 3 2 16 16 N 1.46908 * 109.46831 * 180.02562 * 15 13 3 17 17 C 1.46890 * 110.99979 * 176.23889 * 16 15 13 18 18 H 1.08997 * 109.47716 * 321.61441 * 17 16 15 19 19 C 1.53008 * 109.47432 * 81.61419 * 17 16 15 20 20 C 1.53002 * 109.46639 * 59.21958 * 19 17 16 21 21 O 1.42903 * 109.47117 * 185.10451 * 20 19 17 22 22 C 1.50701 * 109.47243 * 201.61351 * 17 16 15 23 23 C 1.38223 * 120.01159 * 339.97803 * 22 17 16 24 24 C 1.38225 * 120.02168 * 180.02562 * 23 22 17 25 25 C 1.38262 * 120.05449 * 0.02562 * 24 23 22 26 26 C 1.38171 * 120.02564 * 359.97438 * 25 24 23 27 27 C 1.38441 * 120.01453 * 159.99831 * 22 17 16 28 28 F 1.35101 * 120.02329 * 359.96259 * 27 22 17 29 29 H 1.09002 * 109.47015 * 300.00156 * 1 2 3 30 30 H 1.09009 * 109.46956 * 59.99717 * 1 2 3 31 31 H 1.08992 * 109.47476 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47015 * 239.99844 * 2 1 3 33 33 H 1.08996 * 109.46848 * 119.99998 * 2 1 3 34 34 H 1.08992 * 109.47417 * 30.00426 * 4 3 2 35 35 H 1.09004 * 109.46926 * 150.00312 * 4 3 2 36 36 H 0.97000 * 119.99649 * 179.97438 * 8 7 5 37 37 H 1.08994 * 109.47815 * 60.00027 * 15 13 3 38 38 H 1.08997 * 109.47093 * 299.99670 * 15 13 3 39 39 H 1.00898 * 111.00181 * 52.28389 * 16 15 13 40 40 H 1.08993 * 109.47253 * 179.21794 * 19 17 16 41 41 H 1.09000 * 109.46775 * 299.22612 * 19 17 16 42 42 H 1.09001 * 109.47359 * 305.10488 * 20 19 17 43 43 H 1.08999 * 109.47074 * 65.11195 * 20 19 17 44 44 H 0.96694 * 114.00248 * 179.97438 * 21 20 19 45 45 H 1.07997 * 119.98615 * 0.02562 * 23 22 17 46 46 H 1.07999 * 119.96717 * 180.02562 * 24 23 22 47 47 H 1.08002 * 119.98498 * 180.27708 * 25 24 23 48 48 H 1.08005 * 120.01260 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1492 2.3895 -2.8779 8 7 3.3492 3.1256 -3.6181 9 14 5.9132 2.0954 -3.4175 10 1 6.6009 1.2404 -2.4168 11 1 5.9203 1.4162 -4.7380 12 1 6.6211 3.3964 -3.5262 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9913 1.3062 2.4723 16 7 2.3091 2.2064 3.5889 17 6 1.9911 1.5785 4.8782 18 1 1.0692 1.0045 4.7853 19 6 3.1333 0.6461 5.2869 20 6 4.4313 1.4483 5.3985 21 8 5.5190 0.5601 5.6634 22 6 1.8145 2.6462 5.9270 23 6 2.3448 3.9068 5.7263 24 6 2.1834 4.8861 6.6884 25 6 1.4921 4.6059 7.8525 26 6 0.9612 3.3465 8.0553 27 6 1.1216 2.3647 7.0919 28 9 0.6026 1.1330 7.2889 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5818 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 3.6753 3.5160 -4.4440 37 1 2.6211 0.4185 2.5303 38 1 0.9432 1.0126 2.5298 39 1 1.8310 3.0893 3.4890 40 1 2.9036 0.1908 6.2502 41 1 3.2520 -0.1342 4.5352 42 1 4.6135 1.9768 4.4628 43 1 4.3444 2.1688 6.2118 44 1 6.3756 1.0010 5.7464 45 1 2.8853 4.1266 4.8176 46 1 2.5977 5.8709 6.5305 47 1 1.3628 5.3732 8.6015 48 1 0.4215 3.1277 8.9649 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592160961.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:51 Heat of formation + Delta-G solvation = -125.995019 kcal Electronic energy + Delta-G solvation = -29928.636689 eV Core-core repulsion = 25704.062050 eV Total energy + Delta-G solvation = -4224.574639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.91181 -40.98645 -40.28658 -38.24306 -37.14567 -36.74378 -34.91915 -33.17004 -31.60033 -31.58923 -30.93931 -29.57758 -27.61341 -25.95111 -24.70933 -24.06166 -23.47433 -23.21978 -21.01013 -20.03946 -18.79379 -18.55259 -18.39508 -18.05825 -17.50890 -17.31395 -16.85964 -16.68483 -16.51578 -16.21335 -15.93309 -15.64700 -15.31689 -15.00113 -14.81951 -14.64135 -14.52947 -14.19591 -14.08085 -13.95915 -13.62352 -13.47939 -13.28999 -13.14452 -13.05518 -12.95982 -12.78057 -12.67002 -12.49661 -12.41707 -12.17029 -12.05942 -11.88380 -11.68041 -11.62023 -10.85569 -10.64462 -10.56484 -9.90251 -9.66638 -9.52075 -9.39101 -8.22051 -6.36421 0.16956 0.26205 1.36181 1.38430 1.50439 1.84528 2.22592 2.40853 2.63385 3.02546 3.07678 3.28256 3.33033 3.50675 3.68912 3.88873 4.08509 4.09364 4.11649 4.24315 4.25508 4.34549 4.39735 4.42258 4.45904 4.50595 4.56016 4.63485 4.81789 4.90471 4.92204 4.97975 5.05390 5.07543 5.12116 5.13037 5.18078 5.22831 5.36044 5.37628 5.49473 5.58816 5.80976 5.90417 5.95985 6.07626 6.20177 6.71635 6.82488 6.87777 7.29401 7.50696 8.85037 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013520 B = 0.002818 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.567731 B = 9935.138558 C =10284.861226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.264 3.736 5 C -0.540 4.540 6 H 0.051 0.949 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.268 1.268 11 H -0.269 1.269 12 H -0.281 1.281 13 C 0.497 3.503 14 O -0.582 6.582 15 C 0.056 3.944 16 N -0.672 5.672 17 C 0.140 3.860 18 H 0.069 0.931 19 C -0.099 4.099 20 C 0.086 3.914 21 O -0.597 6.597 22 C -0.130 4.130 23 C -0.091 4.091 24 C -0.129 4.129 25 C -0.088 4.088 26 C -0.156 4.156 27 C 0.085 3.915 28 F -0.146 7.146 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.020 0.980 35 H -0.003 1.003 36 H 0.267 0.733 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.351 0.649 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.045 0.955 44 H 0.393 0.607 45 H 0.134 0.866 46 H 0.148 0.852 47 H 0.162 0.838 48 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.670 -3.435 24.518 25.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.143 3.857 5 C -0.579 4.579 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.192 1.192 11 H -0.195 1.195 12 H -0.207 1.207 13 C 0.285 3.715 14 O -0.462 6.462 15 C -0.076 4.076 16 N -0.307 5.307 17 C 0.030 3.970 18 H 0.086 0.914 19 C -0.137 4.137 20 C 0.008 3.992 21 O -0.405 6.405 22 C -0.131 4.131 23 C -0.109 4.109 24 C -0.147 4.147 25 C -0.106 4.106 26 C -0.174 4.174 27 C 0.065 3.935 28 F -0.125 7.125 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.038 0.962 35 H 0.015 0.985 36 H 0.076 0.924 37 H 0.130 0.870 38 H 0.102 0.898 39 H 0.172 0.828 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.243 0.757 45 H 0.152 0.848 46 H 0.166 0.834 47 H 0.179 0.821 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.326 -3.429 24.326 25.137 hybrid contribution 0.235 0.407 -0.937 1.048 sum -5.091 -3.023 23.389 24.127 Atomic orbital electron populations 1.22147 0.94588 1.03463 1.01615 1.21732 0.95259 0.81491 1.03853 1.48259 1.64006 1.15046 1.06250 1.18673 0.95152 0.91516 0.80387 1.21737 0.97923 1.31782 1.06411 0.93036 1.25838 1.02296 0.94527 0.96456 1.70058 1.37635 1.34328 1.14831 0.85385 0.79165 0.78015 0.78347 1.19238 1.19459 1.20703 1.21102 0.77410 0.86666 0.86292 1.90630 1.47344 1.20431 1.87828 1.21865 1.02027 0.96449 0.87223 1.60283 1.64171 1.06383 0.99843 1.20219 0.97260 0.92795 0.86710 0.91352 1.21414 0.92915 0.97497 1.01874 1.22051 0.86247 0.91401 0.99451 1.86367 1.19969 1.39037 1.95096 1.19890 1.01268 0.96592 0.95384 1.21147 0.97905 0.91659 1.00181 1.21559 0.99188 1.00242 0.93715 1.21399 0.95306 0.96098 0.97754 1.21412 1.03058 0.93295 0.99677 1.17719 0.98763 0.80972 0.96014 1.91467 1.84906 1.40844 1.95246 0.92258 0.94222 0.88703 0.91010 0.88402 0.96153 0.98461 0.92445 0.87020 0.89846 0.82810 0.91067 0.91026 0.93130 0.93718 0.75740 0.84778 0.83399 0.82076 0.82873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 10.24 71.98 0.74 -3.18 16 2 C 0.10 3.00 5.93 86.38 0.51 3.52 16 3 N -0.60 -25.39 2.46 -826.17 -2.03 -27.42 16 4 C 0.26 14.32 5.16 85.63 0.44 14.76 16 5 C -0.54 -31.44 9.39 25.60 0.24 -31.20 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 7 C 0.01 0.44 5.46 84.65 0.46 0.91 16 8 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 9 Si 0.97 45.44 29.54 68.60 2.03 47.46 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 C 0.50 20.27 7.70 87.66 0.68 20.94 16 14 O -0.58 -29.46 15.70 -3.02 -0.05 -29.51 16 15 C 0.06 1.56 4.54 85.56 0.39 1.94 16 16 N -0.67 -17.85 4.32 -499.46 -2.16 -20.01 16 17 C 0.14 3.05 2.24 44.17 0.10 3.15 16 18 H 0.07 1.41 7.60 -2.39 -0.02 1.39 16 19 C -0.10 -2.24 5.38 30.60 0.16 -2.08 16 20 C 0.09 2.05 6.42 71.98 0.46 2.51 16 21 O -0.60 -14.37 13.66 -148.98 -2.04 -16.40 16 22 C -0.13 -2.69 4.13 -19.82 -0.08 -2.77 16 23 C -0.09 -1.80 8.08 22.26 0.18 -1.62 16 24 C -0.13 -1.96 10.04 22.27 0.22 -1.74 16 25 C -0.09 -1.10 10.04 22.26 0.22 -0.88 16 26 C -0.16 -2.33 10.03 22.31 0.22 -2.11 16 27 C 0.08 1.66 7.24 22.38 0.16 1.83 16 28 F -0.15 -3.10 16.66 44.97 0.75 -2.35 16 29 H 0.06 1.33 7.22 -2.39 -0.02 1.32 16 30 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 33 H 0.10 2.31 6.44 -2.39 -0.02 2.29 16 34 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 35 H 0.00 -0.17 7.42 -2.38 -0.02 -0.19 16 36 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 37 H 0.11 2.83 6.60 -2.39 -0.02 2.81 16 38 H 0.08 1.87 7.02 -2.39 -0.02 1.85 16 39 H 0.35 9.93 6.75 -89.70 -0.61 9.32 16 40 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 1.67 7.34 -2.39 -0.02 1.65 16 42 H 0.05 1.40 7.42 -2.39 -0.02 1.38 16 43 H 0.04 0.99 6.99 -2.39 -0.02 0.98 16 44 H 0.39 6.17 9.12 -74.06 -0.68 5.50 16 45 H 0.13 3.02 6.77 -2.91 -0.02 3.00 16 46 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 47 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 48 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -76.61 396.52 1.61 -75.00 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -0.29 Total: 25.49 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 5.11 Total: 3.98 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -3.90 Total: -103.67 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -2.08 Total: -45.91 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.75 Total: -2.35 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -76.61 1.61 -75.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592160961.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.996 kcal (2) G-P(sol) polarization free energy of solvation -76.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds