Wall clock time and date at job start Tue Mar 31 2020 21:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 119.99943 * 2 1 4 4 C 1.50697 * 109.47451 * 270.00182 * 3 2 1 5 5 H 1.08006 * 119.99699 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00213 * 179.97438 * 4 3 2 7 7 N 1.31507 * 120.00020 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99962 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.46875 * 60.00284 * 8 6 4 10 10 H 1.48496 * 109.46937 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47511 * 300.00603 * 8 6 4 12 12 C 1.34780 * 120.00136 * 180.02562 * 2 1 3 13 13 O 1.21275 * 119.99797 * 179.97438 * 12 2 1 14 14 C 1.50696 * 119.99790 * 0.02562 * 12 2 1 15 15 C 1.52999 * 109.46949 * 179.97438 * 14 12 2 16 16 N 1.46905 * 109.47095 * 179.97438 * 15 14 12 17 17 C 1.46897 * 111.00173 * 175.57296 * 16 15 14 18 18 H 1.09002 * 109.47162 * 321.73149 * 17 16 15 19 19 C 1.53003 * 109.46796 * 81.72275 * 17 16 15 20 20 C 1.53000 * 109.47037 * 59.23700 * 19 17 16 21 21 O 1.42904 * 109.46955 * 185.11480 * 20 19 17 22 22 C 1.50691 * 109.47467 * 201.72250 * 17 16 15 23 23 C 1.38222 * 120.01181 * 339.98347 * 22 17 16 24 24 C 1.38231 * 120.02517 * 180.02562 * 23 22 17 25 25 C 1.38267 * 120.04995 * 359.97438 * 24 23 22 26 26 C 1.38175 * 120.02708 * 0.02562 * 25 24 23 27 27 C 1.38437 * 120.01583 * 160.00000 * 22 17 16 28 28 F 1.35104 * 120.02590 * 359.95880 * 27 22 17 29 29 H 1.09007 * 109.47212 * 270.00030 * 1 2 3 30 30 H 1.09000 * 109.47197 * 29.99510 * 1 2 3 31 31 H 1.08997 * 109.47539 * 150.00255 * 1 2 3 32 32 H 1.09007 * 109.47068 * 30.00709 * 3 2 1 33 33 H 1.09002 * 109.47208 * 150.00166 * 3 2 1 34 34 H 0.97005 * 120.00516 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.47038 * 59.99895 * 14 12 2 36 36 H 1.09004 * 109.47072 * 299.99968 * 14 12 2 37 37 H 1.08998 * 109.47207 * 60.00158 * 15 14 12 38 38 H 1.08999 * 109.47015 * 299.99632 * 15 14 12 39 39 H 1.00905 * 110.99861 * 51.61795 * 16 15 14 40 40 H 1.09008 * 109.47144 * 179.23012 * 19 17 16 41 41 H 1.09000 * 109.47426 * 299.23217 * 19 17 16 42 42 H 1.08997 * 109.46883 * 305.11099 * 20 19 17 43 43 H 1.08998 * 109.47088 * 65.11562 * 20 19 17 44 44 H 0.96703 * 113.99723 * 179.97438 * 21 20 19 45 45 H 1.07993 * 119.98792 * 0.02562 * 23 22 17 46 46 H 1.07996 * 119.97431 * 180.02562 * 24 23 22 47 47 H 1.08004 * 119.98276 * 180.27379 * 25 24 23 48 48 H 1.08003 * 120.01459 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1259 2.8781 -1.6727 7 7 3.5532 3.6181 -0.6731 8 14 3.4378 3.4170 -3.4339 9 1 2.1404 3.5938 -4.1345 10 1 4.1802 4.7031 -3.4338 11 1 4.2411 2.3823 -4.1333 12 6 2.1389 -1.1672 -0.0005 13 8 3.3516 -1.1671 -0.0010 14 6 1.3854 -2.4723 -0.0017 15 6 2.3796 -3.6352 -0.0027 16 7 1.6451 -4.9074 -0.0032 17 6 2.5660 -6.0469 -0.1101 18 1 3.3773 -5.7956 -0.7933 19 6 3.1428 -6.3676 1.2703 20 6 2.0026 -6.7017 2.2343 21 8 2.5295 -6.8846 3.5500 22 6 1.8211 -7.2473 -0.6345 23 6 0.4429 -7.3000 -0.5431 24 6 -0.2406 -8.4012 -1.0236 25 6 0.4533 -9.4510 -1.5966 26 6 1.8310 -9.4006 -1.6890 27 6 2.5169 -8.2980 -1.2077 28 9 3.8639 -8.2474 -1.2980 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6084 2.0284 0.5140 33 1 3.1499 1.1384 0.5138 34 1 4.0300 4.4441 -0.8502 35 1 0.7591 -2.5294 -0.8919 36 1 0.7584 -2.5306 0.8880 37 1 3.0063 -3.5782 0.8873 38 1 3.0062 -3.5766 -0.8927 39 1 0.9575 -4.9277 -0.7415 40 1 3.8156 -7.2218 1.1934 41 1 3.6931 -5.5041 1.6437 42 1 1.2820 -5.8841 2.2419 43 1 1.5093 -7.6180 1.9099 44 1 1.8610 -7.0992 4.2151 45 1 -0.1001 -6.4804 -0.0962 46 1 -1.3174 -8.4413 -0.9521 47 1 -0.0822 -10.3089 -1.9756 48 1 2.3729 -10.2209 -2.1363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592161523.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:24 Heat of formation + Delta-G solvation = -106.413319 kcal Electronic energy + Delta-G solvation = -29157.851119 eV Core-core repulsion = 24934.125606 eV Total energy + Delta-G solvation = -4223.725513 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.18035 -39.96556 -39.01050 -37.54900 -36.33097 -34.81697 -33.21863 -32.54342 -31.01631 -30.30067 -29.63492 -27.62852 -25.87353 -25.36610 -23.86071 -22.83916 -22.72312 -21.62346 -20.23896 -18.43305 -17.91716 -17.58427 -16.89639 -16.59979 -16.54278 -16.19199 -15.92503 -15.74566 -15.23020 -15.14617 -14.78463 -14.63652 -14.38585 -14.30084 -13.76207 -13.66059 -13.34341 -13.05423 -12.83413 -12.51202 -12.40357 -12.20103 -12.14769 -12.06674 -11.84947 -11.78388 -11.53669 -11.33817 -11.17221 -11.05427 -10.90404 -10.74824 -10.54304 -10.16008 -10.03227 -9.64496 -9.31570 -9.02414 -8.89970 -8.65675 -8.43346 -7.63684 -6.04100 -4.09096 0.76738 0.82917 3.19950 3.31192 3.35953 3.37344 3.45879 3.62680 3.94116 4.05613 4.18901 4.22260 4.44350 4.46502 4.58262 4.88124 4.93827 4.96826 5.07486 5.12094 5.19470 5.25243 5.29495 5.36025 5.38954 5.50534 5.58521 5.62843 5.66884 5.74518 5.80701 5.87301 5.91411 5.94925 5.97955 6.01879 6.07569 6.17971 6.21116 6.50837 6.79337 7.05217 7.14402 7.45068 7.52753 7.54422 7.92007 8.23643 8.42653 8.89987 9.10162 9.55916 11.03943 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014795 B = 0.002282 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.014977 B =12264.554830 C =12795.396045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.604 5.604 3 C 0.245 3.755 4 C -0.527 4.527 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.504 3.496 13 O -0.544 6.544 14 C -0.137 4.137 15 C 0.073 3.927 16 N -0.684 5.684 17 C 0.131 3.869 18 H 0.066 0.934 19 C -0.103 4.103 20 C 0.083 3.917 21 O -0.580 6.580 22 C -0.119 4.119 23 C -0.082 4.082 24 C -0.130 4.130 25 C -0.095 4.095 26 C -0.154 4.154 27 C 0.104 3.896 28 F -0.136 7.136 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.264 0.736 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.043 0.957 39 H 0.341 0.659 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.037 0.963 44 H 0.376 0.624 45 H 0.144 0.856 46 H 0.130 0.870 47 H 0.131 0.869 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.556 -26.911 1.925 29.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.126 3.874 4 C -0.566 4.566 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.290 3.710 13 O -0.422 6.422 14 C -0.177 4.177 15 C -0.056 4.056 16 N -0.316 5.316 17 C 0.022 3.978 18 H 0.084 0.916 19 C -0.141 4.141 20 C 0.005 3.995 21 O -0.385 6.385 22 C -0.120 4.120 23 C -0.100 4.100 24 C -0.148 4.148 25 C -0.113 4.113 26 C -0.173 4.173 27 C 0.084 3.916 28 F -0.115 7.115 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.061 0.939 39 H 0.160 0.840 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.055 0.945 44 H 0.222 0.778 45 H 0.162 0.838 46 H 0.148 0.852 47 H 0.149 0.851 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.230 -26.584 2.337 28.580 hybrid contribution 0.026 0.331 -1.786 1.816 sum -10.204 -26.252 0.551 28.171 Atomic orbital electron populations 1.21628 0.81465 1.02499 1.00402 1.48161 1.06172 1.07893 1.71346 1.19279 0.92577 0.78147 0.97440 1.21386 1.36642 1.06257 0.92276 0.92615 1.24939 0.95365 0.96397 0.97427 1.69919 1.38298 1.14362 1.30784 0.86560 0.78341 0.77840 0.84678 1.20264 1.21139 1.20204 1.20244 0.88071 0.85124 0.77532 1.90676 1.13978 1.87315 1.50193 1.21614 0.99234 0.93018 1.03873 1.21753 0.95070 0.86175 1.02591 1.60698 1.16523 1.01714 1.52669 1.20267 0.93662 0.87704 0.96213 0.91641 1.21435 0.97650 1.02545 0.92513 1.22127 0.96018 0.99452 0.81862 1.86462 1.39047 1.93919 1.19056 1.20016 0.94849 0.96110 1.01038 1.21053 0.92497 0.98640 0.97802 1.21260 1.00490 0.93884 0.99193 1.21040 0.93112 0.98906 0.98229 1.21144 0.95330 0.97936 1.02915 1.17568 0.77142 0.95892 1.01000 1.91515 1.29233 1.96540 1.94170 0.93742 0.90880 0.92449 0.95042 0.93852 0.92643 0.89746 0.88797 0.89795 0.93871 0.83960 0.91316 0.90210 0.91698 0.94464 0.77757 0.83808 0.85220 0.85128 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.24 59.84 0.61 1.91 16 2 N -0.60 -12.75 2.86 -182.96 -0.52 -13.27 16 3 C 0.24 6.47 5.16 -5.19 -0.03 6.44 16 4 C -0.53 -15.06 9.39 -34.44 -0.32 -15.39 16 5 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 8 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.50 10.31 7.67 -10.99 -0.08 10.22 16 13 O -0.54 -13.66 15.56 5.56 0.09 -13.57 16 14 C -0.14 -1.89 4.47 -27.89 -0.12 -2.01 16 15 C 0.07 0.98 4.80 -3.82 -0.02 0.96 16 16 N -0.68 -6.84 4.66 -107.95 -0.50 -7.34 16 17 C 0.13 1.37 2.24 -68.87 -0.15 1.22 16 18 H 0.07 0.78 7.59 -51.93 -0.39 0.39 16 19 C -0.10 -1.17 5.38 -26.73 -0.14 -1.31 16 20 C 0.08 0.84 6.42 37.16 0.24 1.07 16 21 O -0.58 -6.31 13.66 -35.23 -0.48 -6.79 16 22 C -0.12 -1.10 4.13 -104.56 -0.43 -1.53 16 23 C -0.08 -0.60 8.08 -39.59 -0.32 -0.92 16 24 C -0.13 -0.80 10.05 -39.57 -0.40 -1.20 16 25 C -0.09 -0.59 10.04 -39.59 -0.40 -0.99 16 26 C -0.15 -1.20 10.03 -39.51 -0.40 -1.59 16 27 C 0.10 1.02 7.24 -39.42 -0.29 0.73 16 28 F -0.14 -1.55 16.66 2.25 0.04 -1.51 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.17 8.07 -51.93 -0.42 0.76 16 31 H 0.06 0.70 6.44 -51.93 -0.33 0.37 16 32 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.08 1.00 7.40 -51.93 -0.38 0.62 16 36 H 0.09 1.12 8.11 -51.93 -0.42 0.70 16 37 H 0.08 1.27 7.32 -51.93 -0.38 0.89 16 38 H 0.04 0.66 7.92 -51.93 -0.41 0.25 16 39 H 0.34 2.94 7.13 -39.29 -0.28 2.66 16 40 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 41 H 0.08 1.02 7.36 -51.93 -0.38 0.64 16 42 H 0.06 0.65 7.42 -51.93 -0.39 0.26 16 43 H 0.04 0.35 6.99 -51.93 -0.36 -0.02 16 44 H 0.38 2.33 9.12 45.56 0.42 2.75 16 45 H 0.14 0.91 6.77 -52.49 -0.36 0.55 16 46 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 47 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 48 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 LS Contribution 398.06 15.07 6.00 6.00 Total: -1.00 -35.23 398.06 -8.58 -43.81 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -6.56 Total: 2.51 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -2.35 Total: -0.71 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -0.29 Total: -46.70 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.39 Total: -20.36 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.23 -8.58 -43.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592161523.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.606 kcal (2) G-P(sol) polarization free energy of solvation -35.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds