Wall clock time and date at job start Tue Mar 31 2020 21:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 119.99943 * 2 1 4 4 C 1.50697 * 109.47451 * 270.00182 * 3 2 1 5 5 H 1.08006 * 119.99699 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00213 * 179.97438 * 4 3 2 7 7 N 1.31507 * 120.00020 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99962 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.46875 * 60.00284 * 8 6 4 10 10 H 1.48496 * 109.46937 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47511 * 300.00603 * 8 6 4 12 12 C 1.34780 * 120.00136 * 180.02562 * 2 1 3 13 13 O 1.21275 * 119.99797 * 179.97438 * 12 2 1 14 14 C 1.50696 * 119.99790 * 0.02562 * 12 2 1 15 15 C 1.52999 * 109.46949 * 179.97438 * 14 12 2 16 16 N 1.46905 * 109.47095 * 179.97438 * 15 14 12 17 17 C 1.46897 * 111.00173 * 175.57296 * 16 15 14 18 18 H 1.09002 * 109.47162 * 321.73149 * 17 16 15 19 19 C 1.53003 * 109.46796 * 81.72275 * 17 16 15 20 20 C 1.53000 * 109.47037 * 59.23700 * 19 17 16 21 21 O 1.42904 * 109.46955 * 185.11480 * 20 19 17 22 22 C 1.50691 * 109.47467 * 201.72250 * 17 16 15 23 23 C 1.38222 * 120.01181 * 339.98347 * 22 17 16 24 24 C 1.38231 * 120.02517 * 180.02562 * 23 22 17 25 25 C 1.38267 * 120.04995 * 359.97438 * 24 23 22 26 26 C 1.38175 * 120.02708 * 0.02562 * 25 24 23 27 27 C 1.38437 * 120.01583 * 160.00000 * 22 17 16 28 28 F 1.35104 * 120.02590 * 359.95880 * 27 22 17 29 29 H 1.09007 * 109.47212 * 270.00030 * 1 2 3 30 30 H 1.09000 * 109.47197 * 29.99510 * 1 2 3 31 31 H 1.08997 * 109.47539 * 150.00255 * 1 2 3 32 32 H 1.09007 * 109.47068 * 30.00709 * 3 2 1 33 33 H 1.09002 * 109.47208 * 150.00166 * 3 2 1 34 34 H 0.97005 * 120.00516 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.47038 * 59.99895 * 14 12 2 36 36 H 1.09004 * 109.47072 * 299.99968 * 14 12 2 37 37 H 1.08998 * 109.47207 * 60.00158 * 15 14 12 38 38 H 1.08999 * 109.47015 * 299.99632 * 15 14 12 39 39 H 1.00905 * 110.99861 * 51.61795 * 16 15 14 40 40 H 1.09008 * 109.47144 * 179.23012 * 19 17 16 41 41 H 1.09000 * 109.47426 * 299.23217 * 19 17 16 42 42 H 1.08997 * 109.46883 * 305.11099 * 20 19 17 43 43 H 1.08998 * 109.47088 * 65.11562 * 20 19 17 44 44 H 0.96703 * 113.99723 * 179.97438 * 21 20 19 45 45 H 1.07993 * 119.98792 * 0.02562 * 23 22 17 46 46 H 1.07996 * 119.97431 * 180.02562 * 24 23 22 47 47 H 1.08004 * 119.98276 * 180.27379 * 25 24 23 48 48 H 1.08003 * 120.01459 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1259 2.8781 -1.6727 7 7 3.5532 3.6181 -0.6731 8 14 3.4378 3.4170 -3.4339 9 1 2.1404 3.5938 -4.1345 10 1 4.1802 4.7031 -3.4338 11 1 4.2411 2.3823 -4.1333 12 6 2.1389 -1.1672 -0.0005 13 8 3.3516 -1.1671 -0.0010 14 6 1.3854 -2.4723 -0.0017 15 6 2.3796 -3.6352 -0.0027 16 7 1.6451 -4.9074 -0.0032 17 6 2.5660 -6.0469 -0.1101 18 1 3.3773 -5.7956 -0.7933 19 6 3.1428 -6.3676 1.2703 20 6 2.0026 -6.7017 2.2343 21 8 2.5295 -6.8846 3.5500 22 6 1.8211 -7.2473 -0.6345 23 6 0.4429 -7.3000 -0.5431 24 6 -0.2406 -8.4012 -1.0236 25 6 0.4533 -9.4510 -1.5966 26 6 1.8310 -9.4006 -1.6890 27 6 2.5169 -8.2980 -1.2077 28 9 3.8639 -8.2474 -1.2980 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6084 2.0284 0.5140 33 1 3.1499 1.1384 0.5138 34 1 4.0300 4.4441 -0.8502 35 1 0.7591 -2.5294 -0.8919 36 1 0.7584 -2.5306 0.8880 37 1 3.0063 -3.5782 0.8873 38 1 3.0062 -3.5766 -0.8927 39 1 0.9575 -4.9277 -0.7415 40 1 3.8156 -7.2218 1.1934 41 1 3.6931 -5.5041 1.6437 42 1 1.2820 -5.8841 2.2419 43 1 1.5093 -7.6180 1.9099 44 1 1.8610 -7.0992 4.2151 45 1 -0.1001 -6.4804 -0.0962 46 1 -1.3174 -8.4413 -0.9521 47 1 -0.0822 -10.3089 -1.9756 48 1 2.3729 -10.2209 -2.1363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592161523.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:23 Heat of formation + Delta-G solvation = -132.097198 kcal Electronic energy + Delta-G solvation = -29158.964856 eV Core-core repulsion = 24934.125606 eV Total energy + Delta-G solvation = -4224.839250 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.93926 -40.83210 -40.42184 -38.33797 -37.22825 -36.56416 -34.78924 -34.09314 -31.58924 -31.04821 -30.85338 -29.35427 -27.28835 -26.34385 -25.29156 -23.95779 -23.42364 -22.77490 -21.07566 -19.94290 -18.71016 -18.62223 -18.39382 -17.89803 -17.59998 -17.25047 -16.99974 -16.80617 -16.61979 -16.18340 -16.09344 -15.72777 -15.42590 -15.01913 -14.95147 -14.79363 -14.25947 -14.15615 -13.88903 -13.85863 -13.60141 -13.49512 -13.39813 -13.20003 -13.03815 -12.92694 -12.82118 -12.64329 -12.43442 -12.38197 -12.27383 -12.19596 -11.92320 -11.72698 -11.60319 -10.82418 -10.65722 -10.60886 -9.88271 -9.68432 -9.55000 -9.40436 -8.23476 -6.38808 0.18411 0.28406 1.34871 1.39582 1.46807 1.86139 2.27959 2.41461 2.65648 2.98789 3.05863 3.30576 3.36039 3.51004 3.80793 3.91615 4.00638 4.09009 4.12695 4.20452 4.26666 4.39001 4.42841 4.44598 4.49543 4.57144 4.66421 4.74914 4.78467 4.89050 4.93238 4.96260 4.99482 5.04225 5.08489 5.12778 5.16336 5.22550 5.24501 5.38731 5.50867 5.55353 5.81409 5.84388 5.97598 6.05087 6.34452 6.68737 6.80837 6.95903 7.27340 7.50167 8.83377 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014795 B = 0.002282 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.014977 B =12264.554830 C =12795.396045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.258 3.742 4 C -0.543 4.543 5 H 0.054 0.946 6 C 0.005 3.995 7 N -0.929 5.929 8 Si 0.968 3.032 9 H -0.258 1.258 10 H -0.278 1.278 11 H -0.279 1.279 12 C 0.492 3.508 13 O -0.605 6.605 14 C -0.116 4.116 15 C 0.083 3.917 16 N -0.661 5.661 17 C 0.138 3.862 18 H 0.041 0.959 19 C -0.104 4.104 20 C 0.091 3.909 21 O -0.602 6.602 22 C -0.130 4.130 23 C -0.082 4.082 24 C -0.122 4.122 25 C -0.090 4.090 26 C -0.161 4.161 27 C 0.072 3.928 28 F -0.156 7.156 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.023 0.977 33 H -0.006 1.006 34 H 0.267 0.733 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.059 0.941 38 H 0.017 0.983 39 H 0.356 0.644 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.050 0.950 44 H 0.396 0.604 45 H 0.159 0.841 46 H 0.161 0.839 47 H 0.160 0.840 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.474 -28.801 0.747 32.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.072 0.928 6 C -0.194 4.194 7 N -0.569 5.569 8 Si 0.792 3.208 9 H -0.182 1.182 10 H -0.203 1.203 11 H -0.205 1.205 12 C 0.281 3.719 13 O -0.487 6.487 14 C -0.155 4.155 15 C -0.047 4.047 16 N -0.294 5.294 17 C 0.028 3.972 18 H 0.059 0.941 19 C -0.142 4.142 20 C 0.014 3.986 21 O -0.411 6.411 22 C -0.131 4.131 23 C -0.100 4.100 24 C -0.140 4.140 25 C -0.108 4.108 26 C -0.179 4.179 27 C 0.052 3.948 28 F -0.135 7.135 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.041 0.959 33 H 0.012 0.988 34 H 0.076 0.924 35 H 0.137 0.863 36 H 0.145 0.855 37 H 0.078 0.922 38 H 0.036 0.964 39 H 0.177 0.823 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.246 0.754 45 H 0.176 0.824 46 H 0.178 0.822 47 H 0.178 0.822 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -14.229 -28.499 1.170 31.875 hybrid contribution 1.214 0.846 -1.360 2.010 sum -13.015 -27.653 -0.190 30.563 Atomic orbital electron populations 1.21961 0.77575 1.04168 1.02687 1.48206 1.08590 1.06306 1.71175 1.18737 0.91046 0.80659 0.95968 1.21679 1.36921 1.06517 0.93044 0.92802 1.25895 0.94920 0.96469 1.02074 1.70046 1.38876 1.14819 1.33159 0.85461 0.78923 0.77310 0.79074 1.18191 1.20342 1.20469 1.21445 0.87793 0.86886 0.75798 1.90647 1.17023 1.88308 1.52706 1.21534 0.98676 0.88426 1.06903 1.21504 0.94922 0.87913 1.00361 1.60604 1.15820 0.99915 1.53067 1.20070 0.93354 0.88614 0.95193 0.94132 1.21399 0.98151 1.00986 0.93681 1.22046 0.95078 1.00180 0.81292 1.86419 1.40748 1.94057 1.19889 1.19903 0.95727 0.95335 1.02173 1.21247 0.91395 0.99670 0.97661 1.21644 1.01987 0.92868 0.97500 1.21439 0.92369 0.99839 0.97131 1.21390 0.96345 0.97511 1.02676 1.17963 0.76584 0.97337 1.02881 1.91459 1.30765 1.96742 1.94528 0.91085 0.91825 0.88184 0.95874 0.98787 0.92389 0.86340 0.85506 0.92199 0.96443 0.82339 0.92460 0.92669 0.91074 0.93167 0.75445 0.82374 0.82168 0.82225 0.83774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.19 10.24 127.77 1.31 3.50 16 2 N -0.61 -25.78 2.86 -851.14 -2.43 -28.21 16 3 C 0.26 14.16 5.16 85.63 0.44 14.61 16 4 C -0.54 -31.74 9.39 25.60 0.24 -31.50 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.31 5.46 84.66 0.46 0.77 16 7 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 8 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 9 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 C 0.49 20.23 7.67 87.66 0.67 20.90 16 13 O -0.60 -32.06 15.56 -3.01 -0.05 -32.10 16 14 C -0.12 -2.92 4.47 29.85 0.13 -2.79 16 15 C 0.08 2.22 4.80 86.30 0.41 2.63 16 16 N -0.66 -12.28 4.66 -495.46 -2.31 -14.59 16 17 C 0.14 2.93 2.24 44.17 0.10 3.03 16 18 H 0.04 1.06 7.59 -2.39 -0.02 1.04 16 19 C -0.10 -2.45 5.38 30.60 0.16 -2.29 16 20 C 0.09 1.75 6.42 71.98 0.46 2.21 16 21 O -0.60 -12.69 13.66 -148.98 -2.04 -14.72 16 22 C -0.13 -2.27 4.13 -19.82 -0.08 -2.36 16 23 C -0.08 -0.94 8.08 22.26 0.18 -0.76 16 24 C -0.12 -0.99 10.05 22.27 0.22 -0.76 16 25 C -0.09 -0.80 10.04 22.26 0.22 -0.58 16 26 C -0.16 -2.23 10.03 22.31 0.22 -2.01 16 27 C 0.07 1.40 7.24 22.38 0.16 1.56 16 28 F -0.16 -3.81 16.66 44.97 0.75 -3.06 16 29 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.06 1.92 8.07 -2.39 -0.02 1.90 16 31 H 0.10 1.96 6.44 -2.39 -0.02 1.94 16 32 H 0.02 1.29 8.07 -2.38 -0.02 1.27 16 33 H -0.01 -0.38 7.42 -2.39 -0.02 -0.40 16 34 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 35 H 0.12 2.27 7.40 -2.39 -0.02 2.25 16 36 H 0.13 2.48 8.11 -2.39 -0.02 2.46 16 37 H 0.06 1.91 7.32 -2.39 -0.02 1.89 16 38 H 0.02 0.55 7.92 -2.39 -0.02 0.53 16 39 H 0.36 5.04 7.13 -89.69 -0.64 4.40 16 40 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.05 1.54 7.36 -2.39 -0.02 1.52 16 42 H 0.07 1.27 7.42 -2.39 -0.02 1.25 16 43 H 0.05 0.83 6.99 -2.39 -0.02 0.82 16 44 H 0.40 4.32 9.12 -74.06 -0.68 3.65 16 45 H 0.16 1.31 6.77 -2.91 -0.02 1.29 16 46 H 0.16 0.36 8.06 -2.91 -0.02 0.33 16 47 H 0.16 0.48 8.06 -2.91 -0.02 0.46 16 48 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -83.10 398.06 1.24 -81.86 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -0.33 Total: 14.14 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 5.33 Total: 6.18 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -4.46 Total: -99.71 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -2.08 Total: -46.82 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.75 Total: -3.06 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -83.10 1.24 -81.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592161523.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.234 kcal (2) G-P(sol) polarization free energy of solvation -83.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds