Wall clock time and date at job start Tue Mar 31 2020 21:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46503 * 119.99952 * 2 1 4 4 C 1.50702 * 109.46920 * 269.99480 * 3 2 1 5 5 H 1.08001 * 120.00051 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99884 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99956 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00107 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47046 * 90.00076 * 8 6 4 10 10 H 1.48497 * 109.47404 * 209.99759 * 8 6 4 11 11 H 1.48503 * 109.47112 * 329.99943 * 8 6 4 12 12 C 1.34775 * 120.00071 * 179.97438 * 2 1 3 13 13 O 1.21277 * 120.00097 * 180.02562 * 12 2 1 14 14 C 1.50704 * 120.00051 * 0.02562 * 12 2 1 15 15 C 1.52988 * 109.47374 * 180.02562 * 14 12 2 16 16 N 1.46899 * 109.47611 * 180.02562 * 15 14 12 17 17 C 1.46892 * 111.00527 * 174.67437 * 16 15 14 18 18 H 1.09002 * 109.47152 * 38.03281 * 17 16 15 19 19 C 1.52996 * 109.47549 * 278.02898 * 17 16 15 20 20 C 1.53000 * 109.47003 * 302.58045 * 19 17 16 21 21 O 1.42904 * 109.47262 * 174.89329 * 20 19 17 22 22 C 1.50703 * 109.47242 * 158.02845 * 17 16 15 23 23 C 1.38220 * 120.01290 * 25.00117 * 22 17 16 24 24 C 1.38217 * 120.02724 * 179.97438 * 23 22 17 25 25 C 1.38267 * 120.05283 * 0.02562 * 24 23 22 26 26 C 1.38178 * 120.02480 * 0.02562 * 25 24 23 27 27 C 1.38443 * 120.01305 * 204.72421 * 22 17 16 28 28 F 1.35093 * 120.02600 * 0.02562 * 27 22 17 29 29 H 1.08997 * 109.47433 * 270.00283 * 1 2 3 30 30 H 1.08999 * 109.47344 * 30.00132 * 1 2 3 31 31 H 1.08996 * 109.47271 * 150.00303 * 1 2 3 32 32 H 1.08991 * 109.47335 * 29.99705 * 3 2 1 33 33 H 1.09000 * 109.47044 * 149.99756 * 3 2 1 34 34 H 0.97002 * 120.00015 * 179.97438 * 7 6 4 35 35 H 1.08995 * 109.46979 * 59.99695 * 14 12 2 36 36 H 1.09005 * 109.47003 * 300.00052 * 14 12 2 37 37 H 1.09004 * 109.47584 * 59.99644 * 15 14 12 38 38 H 1.09005 * 109.46956 * 299.99907 * 15 14 12 39 39 H 1.00906 * 110.99884 * 298.63621 * 16 15 14 40 40 H 1.09003 * 109.47298 * 62.57578 * 19 17 16 41 41 H 1.09001 * 109.47578 * 182.57792 * 19 17 16 42 42 H 1.09005 * 109.47073 * 294.88978 * 20 19 17 43 43 H 1.08997 * 109.47415 * 54.89425 * 20 19 17 44 44 H 0.96696 * 114.00393 * 179.97438 * 21 20 19 45 45 H 1.08003 * 119.98419 * 359.95297 * 23 22 17 46 46 H 1.08001 * 119.97426 * 180.02562 * 24 23 22 47 47 H 1.07998 * 119.99289 * 179.97438 * 25 24 23 48 48 H 1.07999 * 120.01354 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0960 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.3448 3.2577 -2.9128 8 14 3.7329 3.9292 -0.2530 9 1 5.1064 3.5082 0.1229 10 1 3.7477 5.3560 -0.6645 11 1 2.8269 3.7593 0.9113 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1672 0.0010 14 6 1.3853 -2.4723 0.0005 15 6 2.3795 -3.6352 0.0018 16 7 1.6451 -4.9074 0.0012 17 6 2.5645 -6.0461 -0.1249 18 1 3.4701 -5.8470 0.4481 19 6 2.9268 -6.2485 -1.5975 20 6 1.6497 -6.4641 -2.4119 21 8 1.9769 -6.5345 -3.8012 22 6 1.8987 -7.2903 0.4042 23 6 0.5198 -7.3834 0.4193 24 6 -0.0911 -8.5246 0.9040 25 6 0.6762 -9.5741 1.3747 26 6 2.0549 -9.4829 1.3616 27 6 2.6682 -8.3427 0.8699 28 9 4.0162 -8.2548 0.8509 29 1 -0.3634 0.0001 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6084 2.0284 0.5137 33 1 3.1498 1.1384 0.5139 34 1 3.8210 4.0840 -3.0900 35 1 0.7590 -2.5302 -0.8896 36 1 0.7583 -2.5299 0.8903 37 1 3.0056 -3.5771 0.8922 38 1 3.0068 -3.5778 -0.8878 39 1 1.0724 -4.9947 0.8274 40 1 3.4492 -5.3663 -1.9677 41 1 3.5724 -7.1211 -1.6962 42 1 1.1746 -7.3953 -2.1030 43 1 0.9654 -5.6330 -2.2415 44 1 1.2134 -6.6709 -4.3787 45 1 -0.0806 -6.5640 0.0526 46 1 -1.1686 -8.5966 0.9150 47 1 0.1979 -10.4652 1.7536 48 1 2.6541 -10.3025 1.7297 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592161525.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:28 Heat of formation + Delta-G solvation = -102.163282 kcal Electronic energy + Delta-G solvation = -29220.881024 eV Core-core repulsion = 24997.339807 eV Total energy + Delta-G solvation = -4223.541218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.20092 -39.97456 -39.11233 -37.54833 -36.30179 -34.93288 -33.22537 -32.47776 -31.00411 -30.31781 -29.81649 -28.13632 -25.97355 -25.42640 -23.78993 -22.78005 -22.64076 -21.44864 -20.22932 -18.45076 -17.93700 -17.54449 -16.97814 -16.88345 -16.68563 -16.29279 -15.93269 -15.75240 -15.33152 -15.14668 -14.79243 -14.64757 -14.38989 -14.09043 -13.93846 -13.57674 -13.34760 -13.03917 -12.86894 -12.64785 -12.47525 -12.29024 -12.22301 -12.10849 -11.99617 -11.80346 -11.68325 -11.40470 -11.30089 -11.09041 -10.87216 -10.74661 -10.50884 -10.14034 -9.98712 -9.53553 -9.32217 -9.05154 -9.00136 -8.66566 -8.58007 -7.69995 -6.07604 -4.06356 0.75082 0.81624 3.18384 3.29574 3.35021 3.35859 3.37323 3.57683 3.91543 4.06348 4.14421 4.22998 4.40344 4.44550 4.57065 4.86604 4.92109 4.97326 5.06146 5.11362 5.16726 5.24243 5.25907 5.36167 5.39792 5.49698 5.55809 5.64172 5.67015 5.71159 5.73563 5.84303 5.86947 5.95596 5.98579 6.02281 6.06058 6.16251 6.18192 6.49559 6.70000 6.77340 6.94493 7.13585 7.33884 7.58847 7.61953 8.25130 8.48062 8.93703 8.99504 9.52572 11.05809 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017664 B = 0.002251 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.789564 B =12437.455489 C =12701.066846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.599 5.599 3 C 0.215 3.785 4 C -0.528 4.528 5 H 0.074 0.926 6 C 0.071 3.929 7 N -0.897 5.897 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.507 3.493 13 O -0.543 6.543 14 C -0.133 4.133 15 C 0.073 3.927 16 N -0.683 5.683 17 C 0.132 3.868 18 H 0.065 0.935 19 C -0.104 4.104 20 C 0.082 3.918 21 O -0.579 6.579 22 C -0.120 4.120 23 C -0.080 4.080 24 C -0.131 4.131 25 C -0.094 4.094 26 C -0.155 4.155 27 C 0.104 3.896 28 F -0.136 7.136 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.029 0.971 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.085 0.915 39 H 0.341 0.659 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.037 0.963 43 H 0.065 0.935 44 H 0.377 0.623 45 H 0.144 0.856 46 H 0.130 0.870 47 H 0.131 0.869 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.085 -26.469 9.011 30.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.331 5.331 3 C 0.094 3.906 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.293 3.707 13 O -0.421 6.421 14 C -0.173 4.173 15 C -0.056 4.056 16 N -0.315 5.315 17 C 0.022 3.978 18 H 0.083 0.917 19 C -0.142 4.142 20 C 0.005 3.995 21 O -0.384 6.384 22 C -0.121 4.121 23 C -0.098 4.098 24 C -0.149 4.149 25 C -0.112 4.112 26 C -0.174 4.174 27 C 0.084 3.916 28 F -0.115 7.115 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.103 0.897 39 H 0.160 0.840 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.055 0.945 43 H 0.084 0.916 44 H 0.223 0.777 45 H 0.162 0.838 46 H 0.148 0.852 47 H 0.149 0.851 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.831 -26.160 8.472 29.202 hybrid contribution 0.322 0.552 1.279 1.430 sum -9.509 -25.607 9.751 29.004 Atomic orbital electron populations 1.21659 0.80933 1.03087 1.00350 1.47839 1.06295 1.07161 1.71779 1.19658 0.92436 0.80120 0.98366 1.21327 1.36958 1.07106 0.91265 0.90773 1.24870 0.95265 0.97383 0.95579 1.69900 1.41503 1.23536 1.18639 0.86840 0.80115 0.79739 0.82916 1.19925 1.21069 1.19111 1.20308 0.88056 0.85158 0.77180 1.90674 1.14020 1.87332 1.50091 1.21554 0.99210 0.92516 1.04064 1.21729 0.94880 0.86422 1.02582 1.60593 1.23946 1.01269 1.45724 1.20244 0.94344 0.87130 0.96035 0.91728 1.21439 0.97621 1.03026 0.92129 1.22132 0.97106 0.99886 0.80386 1.86464 1.37837 1.96394 1.17740 1.20021 0.94520 0.95846 1.01709 1.21057 0.92989 0.98415 0.97318 1.21261 1.00463 0.93647 0.99529 1.21040 0.92700 0.99046 0.98442 1.21143 0.95901 0.97470 1.02863 1.17578 0.77004 0.95583 1.01424 1.91511 1.29159 1.96465 1.94341 0.93762 0.90640 0.91966 0.95302 0.94623 0.92568 0.88450 0.89806 0.94061 0.89657 0.84008 0.90161 0.91354 0.94461 0.91630 0.77704 0.83807 0.85225 0.85131 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.24 59.84 0.61 1.86 16 2 N -0.60 -12.23 2.86 -182.96 -0.52 -12.75 16 3 C 0.21 5.30 4.23 -5.19 -0.02 5.28 16 4 C -0.53 -15.33 9.94 -34.44 -0.34 -15.67 16 5 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 8 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 9 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 12 C 0.51 10.09 7.67 -10.98 -0.08 10.01 16 13 O -0.54 -13.28 15.56 5.56 0.09 -13.19 16 14 C -0.13 -1.80 4.56 -27.89 -0.13 -1.92 16 15 C 0.07 0.96 4.76 -3.83 -0.02 0.94 16 16 N -0.68 -6.69 4.49 -107.96 -0.49 -7.17 16 17 C 0.13 1.36 2.29 -68.87 -0.16 1.21 16 18 H 0.06 0.75 7.56 -51.93 -0.39 0.36 16 19 C -0.10 -1.20 5.36 -26.73 -0.14 -1.35 16 20 C 0.08 0.87 6.37 37.16 0.24 1.10 16 21 O -0.58 -6.75 13.66 -35.23 -0.48 -7.23 16 22 C -0.12 -1.08 4.29 -104.55 -0.45 -1.53 16 23 C -0.08 -0.57 7.66 -39.60 -0.30 -0.87 16 24 C -0.13 -0.78 10.04 -39.58 -0.40 -1.18 16 25 C -0.09 -0.57 10.04 -39.59 -0.40 -0.96 16 26 C -0.15 -1.17 10.03 -39.51 -0.40 -1.56 16 27 C 0.10 0.99 7.24 -39.42 -0.29 0.71 16 28 F -0.14 -1.52 16.57 2.25 0.04 -1.49 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 31 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 32 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 33 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 34 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 35 H 0.10 1.23 7.40 -51.93 -0.38 0.85 16 36 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 37 H 0.04 0.58 8.10 -51.93 -0.42 0.16 16 38 H 0.08 1.33 7.12 -51.93 -0.37 0.96 16 39 H 0.34 2.78 7.51 -39.29 -0.29 2.49 16 40 H 0.08 1.07 7.26 -51.93 -0.38 0.70 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.04 0.35 6.80 -51.93 -0.35 0.00 16 43 H 0.07 0.69 7.37 -51.93 -0.38 0.30 16 44 H 0.38 2.64 9.12 45.56 0.42 3.06 16 45 H 0.14 0.89 7.03 -52.48 -0.37 0.52 16 46 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 47 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 48 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 LS Contribution 394.21 15.07 5.94 5.94 Total: -1.00 -36.26 394.21 -8.22 -44.49 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.53 Total: 3.41 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -2.37 Total: -1.94 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -0.23 Total: -47.10 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.39 Total: -20.42 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.26 -8.22 -44.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592161525.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.678 kcal (2) G-P(sol) polarization free energy of solvation -36.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds