Wall clock time and date at job start Tue Mar 31 2020 21:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46503 * 119.99952 * 2 1 4 4 C 1.50702 * 109.46920 * 269.99480 * 3 2 1 5 5 H 1.08001 * 120.00051 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99884 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99956 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00107 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47046 * 90.00076 * 8 6 4 10 10 H 1.48497 * 109.47404 * 209.99759 * 8 6 4 11 11 H 1.48503 * 109.47112 * 329.99943 * 8 6 4 12 12 C 1.34775 * 120.00071 * 179.97438 * 2 1 3 13 13 O 1.21277 * 120.00097 * 180.02562 * 12 2 1 14 14 C 1.50704 * 120.00051 * 0.02562 * 12 2 1 15 15 C 1.52988 * 109.47374 * 180.02562 * 14 12 2 16 16 N 1.46899 * 109.47611 * 180.02562 * 15 14 12 17 17 C 1.46892 * 111.00527 * 174.67437 * 16 15 14 18 18 H 1.09002 * 109.47152 * 38.03281 * 17 16 15 19 19 C 1.52996 * 109.47549 * 278.02898 * 17 16 15 20 20 C 1.53000 * 109.47003 * 302.58045 * 19 17 16 21 21 O 1.42904 * 109.47262 * 174.89329 * 20 19 17 22 22 C 1.50703 * 109.47242 * 158.02845 * 17 16 15 23 23 C 1.38220 * 120.01290 * 25.00117 * 22 17 16 24 24 C 1.38217 * 120.02724 * 179.97438 * 23 22 17 25 25 C 1.38267 * 120.05283 * 0.02562 * 24 23 22 26 26 C 1.38178 * 120.02480 * 0.02562 * 25 24 23 27 27 C 1.38443 * 120.01305 * 204.72421 * 22 17 16 28 28 F 1.35093 * 120.02600 * 0.02562 * 27 22 17 29 29 H 1.08997 * 109.47433 * 270.00283 * 1 2 3 30 30 H 1.08999 * 109.47344 * 30.00132 * 1 2 3 31 31 H 1.08996 * 109.47271 * 150.00303 * 1 2 3 32 32 H 1.08991 * 109.47335 * 29.99705 * 3 2 1 33 33 H 1.09000 * 109.47044 * 149.99756 * 3 2 1 34 34 H 0.97002 * 120.00015 * 179.97438 * 7 6 4 35 35 H 1.08995 * 109.46979 * 59.99695 * 14 12 2 36 36 H 1.09005 * 109.47003 * 300.00052 * 14 12 2 37 37 H 1.09004 * 109.47584 * 59.99644 * 15 14 12 38 38 H 1.09005 * 109.46956 * 299.99907 * 15 14 12 39 39 H 1.00906 * 110.99884 * 298.63621 * 16 15 14 40 40 H 1.09003 * 109.47298 * 62.57578 * 19 17 16 41 41 H 1.09001 * 109.47578 * 182.57792 * 19 17 16 42 42 H 1.09005 * 109.47073 * 294.88978 * 20 19 17 43 43 H 1.08997 * 109.47415 * 54.89425 * 20 19 17 44 44 H 0.96696 * 114.00393 * 179.97438 * 21 20 19 45 45 H 1.08003 * 119.98419 * 359.95297 * 23 22 17 46 46 H 1.08001 * 119.97426 * 180.02562 * 24 23 22 47 47 H 1.07998 * 119.99289 * 179.97438 * 25 24 23 48 48 H 1.07999 * 120.01354 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0960 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.3448 3.2577 -2.9128 8 14 3.7329 3.9292 -0.2530 9 1 5.1064 3.5082 0.1229 10 1 3.7477 5.3560 -0.6645 11 1 2.8269 3.7593 0.9113 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1672 0.0010 14 6 1.3853 -2.4723 0.0005 15 6 2.3795 -3.6352 0.0018 16 7 1.6451 -4.9074 0.0012 17 6 2.5645 -6.0461 -0.1249 18 1 3.4701 -5.8470 0.4481 19 6 2.9268 -6.2485 -1.5975 20 6 1.6497 -6.4641 -2.4119 21 8 1.9769 -6.5345 -3.8012 22 6 1.8987 -7.2903 0.4042 23 6 0.5198 -7.3834 0.4193 24 6 -0.0911 -8.5246 0.9040 25 6 0.6762 -9.5741 1.3747 26 6 2.0549 -9.4829 1.3616 27 6 2.6682 -8.3427 0.8699 28 9 4.0162 -8.2548 0.8509 29 1 -0.3634 0.0001 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6084 2.0284 0.5137 33 1 3.1498 1.1384 0.5139 34 1 3.8210 4.0840 -3.0900 35 1 0.7590 -2.5302 -0.8896 36 1 0.7583 -2.5299 0.8903 37 1 3.0056 -3.5771 0.8922 38 1 3.0068 -3.5778 -0.8878 39 1 1.0724 -4.9947 0.8274 40 1 3.4492 -5.3663 -1.9677 41 1 3.5724 -7.1211 -1.6962 42 1 1.1746 -7.3953 -2.1030 43 1 0.9654 -5.6330 -2.2415 44 1 1.2134 -6.6709 -4.3787 45 1 -0.0806 -6.5640 0.0526 46 1 -1.1686 -8.5966 0.9150 47 1 0.1979 -10.4652 1.7536 48 1 2.6541 -10.3025 1.7297 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592161525.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:27 Heat of formation + Delta-G solvation = -129.570386 kcal Electronic energy + Delta-G solvation = -29222.069486 eV Core-core repulsion = 24997.339807 eV Total energy + Delta-G solvation = -4224.729679 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.94441 -40.85532 -40.44388 -38.34750 -37.22933 -36.60285 -34.75525 -34.10728 -31.56039 -31.27933 -30.94430 -29.71661 -27.33041 -26.34435 -25.09075 -23.80176 -23.41313 -22.71231 -21.07002 -19.92929 -19.15843 -18.62460 -18.40334 -17.92863 -17.65978 -17.27838 -17.02526 -16.80265 -16.64180 -16.22083 -15.92689 -15.68063 -15.44199 -15.11214 -14.95652 -14.71503 -14.55831 -14.14239 -14.03728 -13.81870 -13.65556 -13.61682 -13.44271 -13.25760 -13.10765 -12.96959 -12.77190 -12.57933 -12.43048 -12.35228 -12.29028 -12.01280 -11.92155 -11.75493 -11.60092 -10.84518 -10.82801 -10.66544 -9.87877 -9.66321 -9.55457 -9.37699 -8.35044 -6.40150 0.18133 0.28499 1.31117 1.35720 1.44018 1.81954 2.28112 2.30077 2.65513 2.96977 2.99736 3.30712 3.36140 3.51004 3.80623 3.91347 3.99039 4.07368 4.13414 4.21506 4.27455 4.38863 4.42565 4.44827 4.48648 4.56486 4.63564 4.69173 4.76128 4.81125 4.88813 4.94079 4.96011 4.97220 5.05074 5.08493 5.12610 5.16357 5.23609 5.39378 5.45482 5.51022 5.63019 5.81189 5.97689 6.23082 6.37180 6.61318 6.72155 6.95304 7.20755 7.43955 8.82027 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017664 B = 0.002251 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.789564 B =12437.455489 C =12701.066846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.608 5.608 3 C 0.222 3.778 4 C -0.536 4.536 5 H 0.027 0.973 6 C 0.008 3.992 7 N -0.946 5.946 8 Si 0.950 3.050 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.236 1.236 12 C 0.493 3.507 13 O -0.602 6.602 14 C -0.114 4.114 15 C 0.082 3.918 16 N -0.663 5.663 17 C 0.140 3.860 18 H 0.042 0.958 19 C -0.105 4.105 20 C 0.089 3.911 21 O -0.604 6.604 22 C -0.130 4.130 23 C -0.080 4.080 24 C -0.123 4.123 25 C -0.089 4.089 26 C -0.161 4.161 27 C 0.073 3.927 28 F -0.156 7.156 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.016 0.984 34 H 0.268 0.732 35 H 0.115 0.885 36 H 0.128 0.872 37 H 0.027 0.973 38 H 0.051 0.949 39 H 0.357 0.643 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.070 0.930 44 H 0.396 0.604 45 H 0.158 0.842 46 H 0.160 0.840 47 H 0.160 0.840 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.660 -27.854 11.450 33.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.339 5.339 3 C 0.099 3.901 4 C -0.574 4.574 5 H 0.045 0.955 6 C -0.190 4.190 7 N -0.586 5.586 8 Si 0.772 3.228 9 H -0.204 1.204 10 H -0.199 1.199 11 H -0.159 1.159 12 C 0.282 3.718 13 O -0.484 6.484 14 C -0.153 4.153 15 C -0.048 4.048 16 N -0.296 5.296 17 C 0.030 3.970 18 H 0.060 0.940 19 C -0.143 4.143 20 C 0.012 3.988 21 O -0.413 6.413 22 C -0.132 4.132 23 C -0.098 4.098 24 C -0.141 4.141 25 C -0.107 4.107 26 C -0.179 4.179 27 C 0.053 3.947 28 F -0.135 7.135 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.034 0.966 34 H 0.077 0.923 35 H 0.133 0.867 36 H 0.146 0.854 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.178 0.822 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.245 0.755 45 H 0.175 0.825 46 H 0.178 0.822 47 H 0.178 0.822 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.492 -27.572 10.920 32.581 hybrid contribution 1.380 0.862 0.432 1.684 sum -12.112 -26.710 11.351 31.448 Atomic orbital electron populations 1.22000 0.77314 1.04139 1.03085 1.47986 1.08628 1.05875 1.71456 1.19325 0.92738 0.82845 0.95183 1.21572 1.36733 1.06643 0.92466 0.95460 1.25897 0.95350 0.99058 0.98690 1.70058 1.42772 1.24478 1.21314 0.85689 0.79467 0.77742 0.79870 1.20438 1.19900 1.15908 1.21464 0.87809 0.86935 0.75545 1.90644 1.16886 1.88293 1.52569 1.21486 0.98683 0.88316 1.06850 1.21479 0.94746 0.88144 1.00396 1.60483 1.23044 0.99576 1.46482 1.20030 0.93926 0.88236 0.94847 0.93965 1.21411 0.98221 1.01174 0.93522 1.22085 0.96100 1.00791 0.79799 1.86422 1.39739 1.96499 1.18601 1.19891 0.95429 0.94916 1.02929 1.21237 0.91895 0.99481 0.97148 1.21639 1.01997 0.92658 0.97771 1.21439 0.91901 1.00097 0.97247 1.21389 0.97018 0.96990 1.02528 1.17967 0.76400 0.96987 1.03334 1.91456 1.30671 1.96664 1.94704 0.89986 0.91894 0.88777 0.93081 0.96606 0.92281 0.86654 0.85403 0.95507 0.93016 0.82189 0.93047 0.92374 0.92782 0.91193 0.75474 0.82496 0.82211 0.82218 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.04 10.24 127.77 1.31 3.34 16 2 N -0.61 -24.27 2.86 -851.16 -2.43 -26.70 16 3 C 0.22 10.91 4.23 85.63 0.36 11.27 16 4 C -0.54 -32.07 9.94 25.60 0.25 -31.81 16 5 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 6 C 0.01 0.47 5.47 84.65 0.46 0.93 16 7 N -0.95 -60.87 13.96 21.45 0.30 -60.57 16 8 Si 0.95 45.17 27.47 68.60 1.88 47.05 16 9 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.24 -9.99 6.54 99.48 0.65 -9.34 16 12 C 0.49 19.59 7.67 87.66 0.67 20.26 16 13 O -0.60 -30.66 15.56 -3.02 -0.05 -30.71 16 14 C -0.11 -2.83 4.56 29.85 0.14 -2.69 16 15 C 0.08 2.17 4.76 86.30 0.41 2.58 16 16 N -0.66 -12.18 4.49 -495.48 -2.23 -14.40 16 17 C 0.14 2.95 2.29 44.17 0.10 3.05 16 18 H 0.04 1.07 7.56 -2.39 -0.02 1.05 16 19 C -0.10 -2.57 5.36 30.59 0.16 -2.41 16 20 C 0.09 1.82 6.37 71.98 0.46 2.28 16 21 O -0.60 -13.92 13.66 -148.98 -2.04 -15.96 16 22 C -0.13 -2.23 4.29 -19.82 -0.09 -2.31 16 23 C -0.08 -0.89 7.66 22.26 0.17 -0.72 16 24 C -0.12 -0.95 10.04 22.27 0.22 -0.72 16 25 C -0.09 -0.75 10.04 22.26 0.22 -0.53 16 26 C -0.16 -2.15 10.03 22.31 0.22 -1.93 16 27 C 0.07 1.38 7.24 22.38 0.16 1.54 16 28 F -0.16 -3.73 16.57 44.97 0.75 -2.98 16 29 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.85 8.07 -2.39 -0.02 1.83 16 31 H 0.09 1.90 6.44 -2.39 -0.02 1.88 16 32 H 0.05 2.28 7.13 -2.39 -0.02 2.27 16 33 H 0.02 0.84 6.85 -2.39 -0.02 0.83 16 34 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 35 H 0.12 2.55 7.40 -2.39 -0.02 2.53 16 36 H 0.13 2.13 8.11 -2.38 -0.02 2.11 16 37 H 0.03 0.78 8.10 -2.38 -0.02 0.76 16 38 H 0.05 1.72 7.12 -2.38 -0.02 1.71 16 39 H 0.36 4.80 7.51 -89.69 -0.67 4.13 16 40 H 0.05 1.52 7.26 -2.39 -0.02 1.50 16 41 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.05 0.92 6.80 -2.38 -0.02 0.90 16 43 H 0.07 1.35 7.37 -2.39 -0.02 1.33 16 44 H 0.40 5.16 9.12 -74.06 -0.68 4.48 16 45 H 0.16 1.31 7.03 -2.91 -0.02 1.29 16 46 H 0.16 0.31 8.06 -2.91 -0.02 0.29 16 47 H 0.16 0.41 8.06 -2.91 -0.02 0.39 16 48 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -86.03 394.21 1.02 -85.01 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -0.42 Total: 17.13 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 5.25 Total: 2.13 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -4.36 Total: -101.68 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -2.08 Total: -46.66 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.75 Total: -2.98 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.05 kcal Total: -86.03 1.02 -85.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592161525.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.559 kcal (2) G-P(sol) polarization free energy of solvation -86.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds