Wall clock time and date at job start Tue Mar 31 2020 21:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35992 * 116.99950 * 2 1 4 4 C 1.38563 * 120.05926 * 359.97438 * 3 2 1 5 5 C 1.38431 * 119.97443 * 179.77026 * 4 3 2 6 6 F 1.35096 * 119.94916 * 180.26869 * 5 4 3 7 7 C 1.38443 * 120.09418 * 0.52124 * 5 4 3 8 8 C 1.50708 * 119.93953 * 179.72759 * 7 5 4 9 9 N 1.46901 * 109.46638 * 284.72642 * 8 7 5 10 10 C 1.46906 * 110.99389 * 179.97438 * 9 8 7 11 11 C 1.53076 * 109.45030 * 84.79156 * 10 9 8 12 12 C 1.53183 * 109.29478 * 181.24098 * 11 10 9 13 13 N 1.46930 * 108.89468 * 305.57480 * 12 11 10 14 14 C 1.36937 * 120.63259 * 233.51494 * 13 12 11 15 15 H 1.08000 * 119.99761 * 151.83401 * 14 13 12 16 16 C 1.38806 * 120.00219 * 331.83653 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.07619 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.07294 * 16 14 13 19 19 H 1.48506 * 109.46812 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47258 * 119.99807 * 18 16 14 21 21 H 1.48499 * 109.47344 * 240.00342 * 18 16 14 22 22 C 1.46925 * 118.73328 * 53.53726 * 13 12 11 23 23 C 1.53033 * 109.45803 * 204.99760 * 10 9 8 24 24 C 1.38251 * 120.12060 * 359.45230 * 7 5 4 25 25 C 1.38533 * 120.02521 * 0.29935 * 24 7 5 26 26 O 1.36043 * 120.04966 * 180.02562 * 25 24 7 27 27 C 1.42897 * 116.99919 * 359.97438 * 26 25 24 28 28 H 1.08991 * 109.47254 * 299.99424 * 1 2 3 29 29 H 1.08997 * 109.47021 * 60.00002 * 1 2 3 30 30 H 1.09007 * 109.46818 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.01219 * 359.97438 * 4 3 2 32 32 H 1.08994 * 109.46829 * 164.72457 * 8 7 5 33 33 H 1.09000 * 109.46712 * 44.72570 * 8 7 5 34 34 H 1.00900 * 110.99893 * 56.04796 * 9 8 7 35 35 H 1.08990 * 109.46340 * 324.97737 * 10 9 8 36 36 H 1.09005 * 109.39190 * 61.36004 * 11 10 9 37 37 H 1.09004 * 109.62337 * 301.25797 * 11 10 9 38 38 H 1.09005 * 109.58619 * 185.72200 * 12 11 10 39 39 H 1.08998 * 109.58733 * 65.43770 * 12 11 10 40 40 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.58688 * 66.18006 * 22 13 12 42 42 H 1.08996 * 109.58570 * 186.45714 * 22 13 12 43 43 H 1.09003 * 109.49897 * 58.66804 * 23 10 9 44 44 H 1.09004 * 109.50093 * 298.57274 * 23 10 9 45 45 H 1.08006 * 119.98711 * 180.27266 * 24 7 5 46 46 H 1.08998 * 109.47116 * 180.02562 * 27 26 25 47 47 H 1.08996 * 109.47488 * 300.00694 * 27 26 25 48 48 H 1.09000 * 109.46622 * 60.00474 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2929 2.3746 -0.0005 5 6 1.9231 3.6071 0.0043 6 9 1.1880 4.7405 0.0092 7 6 3.3056 3.6798 -0.0013 8 6 3.9881 5.0235 -0.0022 9 7 3.8905 5.6212 -1.3406 10 6 4.5460 6.9354 -1.3792 11 6 6.0435 6.7506 -1.6371 12 6 6.7284 8.1208 -1.6458 13 7 6.0481 8.9866 -2.6186 14 6 6.7568 9.6198 -3.6045 15 1 6.2792 9.8616 -4.5426 16 6 8.0889 9.9509 -3.3984 17 7 8.5811 9.9700 -2.1778 18 14 9.1834 10.3692 -4.8532 19 1 8.3952 10.2761 -6.1084 20 1 9.7057 11.7507 -4.6987 21 1 10.3190 9.4140 -4.9093 22 6 4.5930 9.1605 -2.5131 23 6 3.9311 7.7791 -2.4981 24 6 4.0613 2.5221 -0.0002 25 6 3.4358 1.2860 0.0002 26 8 4.1789 0.1464 0.0017 27 6 5.5997 0.2985 0.0024 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2143 2.3194 -0.0014 32 1 5.0376 4.8980 0.2641 33 1 3.5046 5.6770 0.7239 34 1 2.9284 5.6885 -1.6372 35 1 4.4040 7.4402 -0.4237 36 1 6.1873 6.2658 -2.6028 37 1 6.4768 6.1323 -0.8510 38 1 7.7746 8.0046 -1.9291 39 1 6.6660 8.5668 -0.6532 40 1 9.5119 10.2017 -2.0336 41 1 4.3542 9.6901 -1.5908 42 1 4.2305 9.7326 -3.3671 43 1 2.8609 7.8904 -2.3237 44 1 4.0947 7.2869 -3.4568 45 1 5.1397 2.5813 -0.0001 46 1 6.0703 -0.6846 0.0032 47 1 5.9069 0.8473 -0.8879 48 1 5.9057 0.8489 0.8920 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593595884.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:01 Heat of formation + Delta-G solvation = -68.987139 kcal Electronic energy + Delta-G solvation = -29546.193804 eV Core-core repulsion = 25324.091212 eV Total energy + Delta-G solvation = -4222.102592 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.04896 -40.82609 -38.77612 -38.22982 -37.13358 -34.98397 -32.54939 -31.02288 -30.29798 -29.90393 -29.13762 -27.60114 -27.44230 -25.33344 -24.04955 -22.66769 -22.23096 -21.62047 -21.08492 -19.09863 -18.84426 -17.75990 -17.64032 -16.72527 -16.50246 -16.11804 -15.65505 -15.54104 -15.50069 -14.86832 -14.83521 -14.67284 -14.57103 -14.50663 -13.87576 -13.44587 -13.19385 -13.07105 -12.98629 -12.75636 -12.61382 -12.22112 -12.12589 -11.98335 -11.76414 -11.51325 -11.46674 -11.18564 -11.04487 -10.93989 -10.74711 -10.70696 -10.18595 -10.17200 -9.88663 -9.53910 -9.49136 -9.05947 -8.46587 -8.20815 -7.96420 -6.64099 -5.76195 -3.18297 0.84554 0.95882 2.86740 2.97052 3.21831 3.38929 3.46744 3.49296 4.02556 4.30845 4.37280 4.52176 4.65689 4.67928 4.78524 4.80653 4.86604 4.94836 4.97111 5.13462 5.21826 5.29107 5.34483 5.42100 5.46295 5.50961 5.62389 5.63485 5.76140 5.82358 5.93312 6.10237 6.16363 6.34215 6.37290 6.43587 6.60453 6.66212 6.68129 6.78158 6.80569 7.02196 7.21189 7.34774 7.42375 7.59599 7.71441 7.83144 8.48448 9.24564 9.88010 10.45012 11.32494 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018822 B = 0.002346 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.284010 B =11931.199830 C =12882.802757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.302 6.302 3 C 0.123 3.877 4 C -0.209 4.209 5 C 0.105 3.895 6 F -0.135 7.135 7 C -0.100 4.100 8 C 0.101 3.899 9 N -0.681 5.681 10 C 0.096 3.904 11 C -0.124 4.124 12 C 0.170 3.830 13 N -0.592 5.592 14 C -0.249 4.249 15 H 0.065 0.935 16 C 0.000 4.000 17 N -0.904 5.904 18 Si 0.901 3.099 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.289 1.289 22 C 0.148 3.852 23 C -0.132 4.132 24 C -0.128 4.128 25 C 0.092 3.908 26 O -0.305 6.305 27 C 0.023 3.977 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.146 0.854 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.335 0.665 35 H 0.037 0.963 36 H 0.060 0.940 37 H 0.044 0.956 38 H 0.088 0.912 39 H 0.015 0.985 40 H 0.253 0.747 41 H 0.015 0.985 42 H 0.055 0.945 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.148 0.852 46 H 0.101 0.899 47 H 0.059 0.941 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.092 -20.302 7.524 25.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.215 6.215 3 C 0.077 3.923 4 C -0.228 4.228 5 C 0.085 3.915 6 F -0.114 7.114 7 C -0.101 4.101 8 C -0.028 4.028 9 N -0.312 5.312 10 C -0.013 4.013 11 C -0.164 4.164 12 C 0.044 3.956 13 N -0.315 5.315 14 C -0.379 4.379 15 H 0.083 0.917 16 C -0.198 4.198 17 N -0.549 5.549 18 Si 0.731 3.269 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.216 1.216 22 C 0.021 3.979 23 C -0.172 4.172 24 C -0.147 4.147 25 C 0.046 3.954 26 O -0.219 6.219 27 C -0.072 4.072 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.164 0.836 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.153 0.847 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.106 0.894 39 H 0.033 0.967 40 H 0.063 0.937 41 H 0.033 0.967 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.085 0.915 45 H 0.165 0.835 46 H 0.119 0.881 47 H 0.078 0.922 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.376 -20.920 7.320 25.887 hybrid contribution -0.254 1.240 -0.147 1.274 sum -13.630 -19.680 7.173 24.990 Atomic orbital electron populations 1.23119 0.78349 1.04195 1.01462 1.86199 1.21207 1.25312 1.88769 1.17850 0.88919 0.84724 1.00845 1.20890 1.00888 0.90337 1.10697 1.17079 0.88513 0.81637 1.04239 1.91492 1.76976 1.48954 1.93958 1.19628 0.91164 0.96549 1.02780 1.20802 1.00431 0.90175 0.91379 1.60743 1.21210 1.25485 1.23787 1.21517 0.95822 0.86509 0.97422 1.22202 0.93207 1.00274 1.00668 1.20794 0.97500 0.85739 0.91570 1.44065 1.01034 1.52164 1.34200 1.19229 0.93552 1.32194 0.92901 0.91689 1.25045 0.98961 0.99702 0.96069 1.70044 1.14111 1.52138 1.18557 0.86233 0.80721 0.77543 0.82354 1.20255 1.21789 1.21567 1.20855 0.85945 0.92569 0.98533 1.22200 0.97612 0.98626 0.98784 1.20852 1.00798 0.89471 1.03599 1.18198 0.88173 0.86283 1.02726 1.86170 1.18934 1.27769 1.89015 1.23133 0.78226 1.04070 1.01737 0.92557 0.92475 0.87980 0.83611 0.89552 0.94058 0.84661 0.94546 0.92092 0.93745 0.89403 0.96732 0.93745 0.96672 0.92643 0.93468 0.91476 0.83472 0.88070 0.92196 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.30 -3.20 10.28 -34.25 -0.35 -3.55 16 3 C 0.12 1.39 6.70 -39.13 -0.26 1.12 16 4 C -0.21 -2.17 9.01 -39.39 -0.36 -2.53 16 5 C 0.11 1.25 7.10 -39.43 -0.28 0.97 16 6 F -0.14 -1.70 16.36 2.25 0.04 -1.66 16 7 C -0.10 -1.20 5.43 -104.54 -0.57 -1.77 16 8 C 0.10 1.32 5.29 -4.97 -0.03 1.30 16 9 N -0.68 -10.18 6.30 -107.93 -0.68 -10.86 16 10 C 0.10 1.66 2.45 -67.65 -0.17 1.50 16 11 C -0.12 -2.42 5.60 -26.60 -0.15 -2.57 16 12 C 0.17 4.10 5.30 -3.71 -0.02 4.08 16 13 N -0.59 -15.03 3.00 -172.33 -0.52 -15.55 16 14 C -0.25 -6.91 9.58 -15.06 -0.14 -7.06 16 15 H 0.07 1.78 7.89 -52.49 -0.41 1.36 16 16 C 0.00 0.01 4.92 -17.43 -0.09 -0.07 16 17 N -0.90 -26.41 11.20 55.49 0.62 -25.79 16 18 Si 0.90 21.86 29.59 -169.99 -5.03 16.83 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 C 0.15 3.16 6.52 -3.71 -0.02 3.13 16 23 C -0.13 -2.37 5.36 -26.62 -0.14 -2.51 16 24 C -0.13 -1.42 8.65 -39.47 -0.34 -1.76 16 25 C 0.09 1.07 6.70 -39.14 -0.26 0.80 16 26 O -0.31 -3.42 10.28 -34.42 -0.35 -3.77 16 27 C 0.02 0.17 9.81 101.05 0.99 1.17 16 28 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 29 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 30 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.15 1.17 6.30 -52.49 -0.33 0.84 16 32 H 0.09 1.10 7.21 -51.93 -0.37 0.73 16 33 H 0.04 0.55 7.98 -51.93 -0.41 0.13 16 34 H 0.34 4.85 7.81 -39.29 -0.31 4.54 16 35 H 0.04 0.65 7.80 -51.93 -0.40 0.25 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.04 0.79 7.42 -51.93 -0.39 0.40 16 38 H 0.09 2.37 6.06 -51.93 -0.31 2.05 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 43 H 0.05 0.73 8.10 -51.93 -0.42 0.31 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.15 1.39 6.23 -52.48 -0.33 1.06 16 46 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 48 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 LS Contribution 385.10 15.07 5.80 5.80 Total: -1.00 -31.76 385.10 -8.68 -40.44 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -7.37 Total: 1.16 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -0.84 Total: -3.06 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -0.57 Total: -52.20 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.71 Total: -7.32 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.76 -8.68 -40.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593595884.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.543 kcal (2) G-P(sol) polarization free energy of solvation -31.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds