Wall clock time and date at job start Tue Mar 31 2020 21:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35992 * 116.99950 * 2 1 4 4 C 1.38563 * 120.05926 * 359.97438 * 3 2 1 5 5 C 1.38431 * 119.97443 * 179.77026 * 4 3 2 6 6 F 1.35096 * 119.94916 * 180.26869 * 5 4 3 7 7 C 1.38443 * 120.09418 * 0.52124 * 5 4 3 8 8 C 1.50708 * 119.93953 * 179.72759 * 7 5 4 9 9 N 1.46901 * 109.46638 * 284.72642 * 8 7 5 10 10 C 1.46906 * 110.99389 * 179.97438 * 9 8 7 11 11 C 1.53076 * 109.45030 * 84.79156 * 10 9 8 12 12 C 1.53183 * 109.29478 * 181.24098 * 11 10 9 13 13 N 1.46930 * 108.89468 * 305.57480 * 12 11 10 14 14 C 1.36937 * 120.63259 * 233.51494 * 13 12 11 15 15 H 1.08000 * 119.99761 * 151.83401 * 14 13 12 16 16 C 1.38806 * 120.00219 * 331.83653 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.07619 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.07294 * 16 14 13 19 19 H 1.48506 * 109.46812 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47258 * 119.99807 * 18 16 14 21 21 H 1.48499 * 109.47344 * 240.00342 * 18 16 14 22 22 C 1.46925 * 118.73328 * 53.53726 * 13 12 11 23 23 C 1.53033 * 109.45803 * 204.99760 * 10 9 8 24 24 C 1.38251 * 120.12060 * 359.45230 * 7 5 4 25 25 C 1.38533 * 120.02521 * 0.29935 * 24 7 5 26 26 O 1.36043 * 120.04966 * 180.02562 * 25 24 7 27 27 C 1.42897 * 116.99919 * 359.97438 * 26 25 24 28 28 H 1.08991 * 109.47254 * 299.99424 * 1 2 3 29 29 H 1.08997 * 109.47021 * 60.00002 * 1 2 3 30 30 H 1.09007 * 109.46818 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.01219 * 359.97438 * 4 3 2 32 32 H 1.08994 * 109.46829 * 164.72457 * 8 7 5 33 33 H 1.09000 * 109.46712 * 44.72570 * 8 7 5 34 34 H 1.00900 * 110.99893 * 56.04796 * 9 8 7 35 35 H 1.08990 * 109.46340 * 324.97737 * 10 9 8 36 36 H 1.09005 * 109.39190 * 61.36004 * 11 10 9 37 37 H 1.09004 * 109.62337 * 301.25797 * 11 10 9 38 38 H 1.09005 * 109.58619 * 185.72200 * 12 11 10 39 39 H 1.08998 * 109.58733 * 65.43770 * 12 11 10 40 40 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.58688 * 66.18006 * 22 13 12 42 42 H 1.08996 * 109.58570 * 186.45714 * 22 13 12 43 43 H 1.09003 * 109.49897 * 58.66804 * 23 10 9 44 44 H 1.09004 * 109.50093 * 298.57274 * 23 10 9 45 45 H 1.08006 * 119.98711 * 180.27266 * 24 7 5 46 46 H 1.08998 * 109.47116 * 180.02562 * 27 26 25 47 47 H 1.08996 * 109.47488 * 300.00694 * 27 26 25 48 48 H 1.09000 * 109.46622 * 60.00474 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2929 2.3746 -0.0005 5 6 1.9231 3.6071 0.0043 6 9 1.1880 4.7405 0.0092 7 6 3.3056 3.6798 -0.0013 8 6 3.9881 5.0235 -0.0022 9 7 3.8905 5.6212 -1.3406 10 6 4.5460 6.9354 -1.3792 11 6 6.0435 6.7506 -1.6371 12 6 6.7284 8.1208 -1.6458 13 7 6.0481 8.9866 -2.6186 14 6 6.7568 9.6198 -3.6045 15 1 6.2792 9.8616 -4.5426 16 6 8.0889 9.9509 -3.3984 17 7 8.5811 9.9700 -2.1778 18 14 9.1834 10.3692 -4.8532 19 1 8.3952 10.2761 -6.1084 20 1 9.7057 11.7507 -4.6987 21 1 10.3190 9.4140 -4.9093 22 6 4.5930 9.1605 -2.5131 23 6 3.9311 7.7791 -2.4981 24 6 4.0613 2.5221 -0.0002 25 6 3.4358 1.2860 0.0002 26 8 4.1789 0.1464 0.0017 27 6 5.5997 0.2985 0.0024 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2143 2.3194 -0.0014 32 1 5.0376 4.8980 0.2641 33 1 3.5046 5.6770 0.7239 34 1 2.9284 5.6885 -1.6372 35 1 4.4040 7.4402 -0.4237 36 1 6.1873 6.2658 -2.6028 37 1 6.4768 6.1323 -0.8510 38 1 7.7746 8.0046 -1.9291 39 1 6.6660 8.5668 -0.6532 40 1 9.5119 10.2017 -2.0336 41 1 4.3542 9.6901 -1.5908 42 1 4.2305 9.7326 -3.3671 43 1 2.8609 7.8904 -2.3237 44 1 4.0947 7.2869 -3.4568 45 1 5.1397 2.5813 -0.0001 46 1 6.0703 -0.6846 0.0032 47 1 5.9069 0.8473 -0.8879 48 1 5.9057 0.8489 0.8920 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593595884.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:00 Heat of formation + Delta-G solvation = -88.658165 kcal Electronic energy + Delta-G solvation = -29547.046803 eV Core-core repulsion = 25324.091212 eV Total energy + Delta-G solvation = -4222.955592 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.95707 -41.60379 -39.71196 -39.47065 -38.16282 -36.44202 -34.19654 -32.39646 -31.61399 -31.10145 -30.49222 -28.39077 -28.08506 -26.80995 -25.50599 -23.89877 -23.38960 -23.01882 -22.31345 -20.74176 -19.64389 -18.73475 -18.55016 -18.43141 -17.26976 -17.04032 -16.89453 -16.51846 -16.41774 -16.18207 -15.90746 -15.67500 -15.54777 -15.50685 -15.37183 -15.28897 -14.82969 -14.34740 -13.93164 -13.79433 -13.61737 -13.44114 -13.37973 -13.09444 -12.92048 -12.77878 -12.60936 -12.53267 -12.37194 -12.11458 -12.10187 -11.98614 -11.90608 -11.78415 -11.69639 -11.27283 -11.13148 -10.55216 -9.88274 -9.41860 -8.82698 -8.68235 -7.87296 -5.32585 0.03261 0.09218 1.46212 1.48055 1.58805 2.21132 2.27721 2.36900 2.51634 3.17958 3.19490 3.31131 3.56170 3.65978 3.70088 3.95520 3.99839 4.00845 4.14773 4.28905 4.34210 4.39779 4.42079 4.42954 4.45439 4.55500 4.57741 4.63436 4.70538 4.72278 4.78045 4.82045 4.87369 4.96862 4.99715 5.04963 5.11437 5.20389 5.23019 5.38995 5.51524 5.53611 5.65538 5.76547 5.99892 6.05866 6.38398 6.43007 6.47950 7.15450 7.86468 8.38395 9.19538 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018822 B = 0.002346 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.284010 B =11931.199830 C =12882.802757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.320 6.320 3 C 0.117 3.883 4 C -0.203 4.203 5 C 0.094 3.906 6 F -0.141 7.141 7 C -0.110 4.110 8 C 0.104 3.896 9 N -0.679 5.679 10 C 0.106 3.894 11 C -0.108 4.108 12 C 0.178 3.822 13 N -0.611 5.611 14 C -0.261 4.261 15 H 0.066 0.934 16 C -0.052 4.052 17 N -0.935 5.935 18 Si 0.967 3.033 19 H -0.267 1.267 20 H -0.292 1.292 21 H -0.289 1.289 22 C 0.143 3.857 23 C -0.120 4.120 24 C -0.127 4.127 25 C 0.081 3.919 26 O -0.322 6.322 27 C 0.016 3.984 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.122 0.878 31 H 0.169 0.831 32 H 0.089 0.911 33 H 0.042 0.958 34 H 0.342 0.658 35 H 0.034 0.966 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.054 0.946 39 H -0.006 1.006 40 H 0.250 0.750 41 H 0.013 0.987 42 H 0.056 0.944 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.160 0.840 46 H 0.120 0.880 47 H 0.061 0.939 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.455 -21.742 7.243 27.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.234 6.234 3 C 0.070 3.930 4 C -0.222 4.222 5 C 0.074 3.926 6 F -0.120 7.120 7 C -0.112 4.112 8 C -0.025 4.025 9 N -0.310 5.310 10 C -0.003 4.003 11 C -0.148 4.148 12 C 0.051 3.949 13 N -0.335 5.335 14 C -0.391 4.391 15 H 0.083 0.917 16 C -0.247 4.247 17 N -0.582 5.582 18 Si 0.795 3.205 19 H -0.192 1.192 20 H -0.219 1.219 21 H -0.216 1.216 22 C 0.017 3.983 23 C -0.159 4.159 24 C -0.147 4.147 25 C 0.035 3.965 26 O -0.237 6.237 27 C -0.079 4.079 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.140 0.860 31 H 0.186 0.814 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.160 0.840 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.012 0.988 40 H 0.059 0.941 41 H 0.031 0.969 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.178 0.822 46 H 0.138 0.862 47 H 0.080 0.920 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.779 -22.379 7.036 27.726 hybrid contribution 0.101 1.615 -0.019 1.618 sum -14.678 -20.764 7.017 26.378 Atomic orbital electron populations 1.23434 0.76201 1.05944 1.02468 1.86182 1.23512 1.25103 1.88599 1.18050 0.89156 0.85285 1.00470 1.21060 1.02009 0.89466 1.09691 1.17223 0.88528 0.81939 1.04862 1.91474 1.77079 1.49312 1.94097 1.19554 0.91389 0.96165 1.04049 1.20787 1.00807 0.90672 0.90211 1.60612 1.21500 1.23688 1.25215 1.21260 0.94309 0.87729 0.97014 1.21947 0.94815 0.97342 1.00696 1.20590 0.96293 0.87887 0.90082 1.44340 1.02674 1.52491 1.33961 1.19541 0.94180 1.31829 0.93567 0.91675 1.25808 1.00230 1.00252 0.98446 1.70190 1.14109 1.53447 1.20421 0.85215 0.78739 0.76883 0.79661 1.19152 1.21876 1.21577 1.21011 0.83972 0.94873 0.98421 1.22025 0.99053 0.96217 0.98632 1.20958 1.01433 0.89082 1.03184 1.18413 0.88704 0.86561 1.02817 1.86150 1.20613 1.27915 1.88978 1.23382 0.76589 1.05580 1.02318 0.91368 0.91563 0.86021 0.81398 0.89296 0.94042 0.83962 0.94818 0.93222 0.91962 0.92789 0.98767 0.94103 0.96880 0.92505 0.90354 0.92193 0.82242 0.86158 0.91998 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.32 -6.30 10.28 -79.56 -0.82 -7.11 16 3 C 0.12 2.47 6.70 22.56 0.15 2.62 16 4 C -0.20 -3.85 9.01 22.39 0.20 -3.65 16 5 C 0.09 2.09 7.10 22.36 0.16 2.25 16 6 F -0.14 -3.29 16.36 44.97 0.74 -2.56 16 7 C -0.11 -2.49 5.43 -19.81 -0.11 -2.60 16 8 C 0.10 2.55 5.29 85.56 0.45 3.00 16 9 N -0.68 -19.00 6.30 -495.38 -3.12 -22.12 16 10 C 0.11 3.53 2.45 44.95 0.11 3.64 16 11 C -0.11 -4.19 5.60 30.68 0.17 -4.02 16 12 C 0.18 8.76 5.30 86.36 0.46 9.21 16 13 N -0.61 -31.40 3.00 -699.11 -2.09 -33.49 16 14 C -0.26 -14.64 9.58 84.03 0.81 -13.83 16 15 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 16 C -0.05 -2.96 4.92 84.86 0.42 -2.54 16 17 N -0.94 -56.02 11.20 21.65 0.24 -55.78 16 18 Si 0.97 45.44 29.59 68.60 2.03 47.47 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 21 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 22 C 0.14 6.04 6.52 86.36 0.56 6.60 16 23 C -0.12 -4.08 5.36 30.67 0.16 -3.91 16 24 C -0.13 -2.65 8.65 22.34 0.19 -2.46 16 25 C 0.08 1.78 6.70 22.56 0.15 1.93 16 26 O -0.32 -6.87 10.28 -80.14 -0.82 -7.69 16 27 C 0.02 0.21 9.81 113.37 1.11 1.32 16 28 H 0.07 0.53 7.66 -2.39 -0.02 0.51 16 29 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 30 H 0.12 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.17 2.27 6.30 -2.91 -0.02 2.26 16 32 H 0.09 2.12 7.21 -2.39 -0.02 2.10 16 33 H 0.04 1.03 7.98 -2.39 -0.02 1.01 16 34 H 0.34 9.08 7.81 -89.69 -0.70 8.38 16 35 H 0.03 1.16 7.80 -2.39 -0.02 1.14 16 36 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.06 2.16 7.42 -2.38 -0.02 2.15 16 38 H 0.05 3.01 6.06 -2.38 -0.01 3.00 16 39 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 40 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 41 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.06 2.33 7.93 -2.39 -0.02 2.32 16 43 H 0.08 2.20 8.10 -2.39 -0.02 2.18 16 44 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 45 H 0.16 2.77 6.23 -2.91 -0.02 2.76 16 46 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.06 0.80 7.66 -2.39 -0.02 0.78 16 48 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 Total: -1.00 -68.83 385.10 2.54 -66.28 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.27 Total: 16.19 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 6.12 Total: -1.20 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -4.97 Total: -111.39 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -1.64 Total: -14.80 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.74 Total: -2.56 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -68.83 2.54 -66.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593595884.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.375 kcal (2) G-P(sol) polarization free energy of solvation -68.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds