Wall clock time and date at job start Tue Mar 31 2020 21:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 119.99825 * 2 1 4 4 C 1.53004 * 109.47196 * 90.00030 * 3 2 1 5 5 O 1.42893 * 109.47267 * 64.99900 * 4 3 2 6 6 C 1.35956 * 117.00026 * 179.97438 * 5 4 3 7 7 C 1.38657 * 120.06128 * 359.97438 * 6 5 4 8 8 C 1.38184 * 119.96964 * 180.02562 * 7 6 5 9 9 C 1.38265 * 120.09281 * 359.97438 * 8 7 6 10 10 C 1.38248 * 120.12705 * 0.02562 * 9 8 7 11 11 C 1.38332 * 120.03366 * 359.97438 * 10 9 8 12 12 F 1.35103 * 120.05240 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00460 * 179.97438 * 2 1 3 14 14 O 1.21271 * 120.00572 * 179.97438 * 13 2 1 15 15 C 1.50708 * 119.99349 * 0.02562 * 13 2 1 16 16 H 1.08997 * 109.46948 * 319.99660 * 15 13 2 17 17 N 1.46903 * 109.46772 * 199.99625 * 15 13 2 18 18 C 1.53000 * 109.47145 * 79.99903 * 15 13 2 19 19 C 1.53000 * 109.47002 * 184.99851 * 18 15 13 20 20 C 1.53000 * 109.47002 * 179.97438 * 19 18 15 21 21 C 1.50699 * 109.47188 * 180.02562 * 20 19 18 22 22 H 1.08010 * 119.99662 * 359.97438 * 21 20 19 23 23 C 1.37873 * 120.00630 * 179.97438 * 21 20 19 24 24 N 1.31517 * 119.99405 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00605 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46876 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47451 * 119.99684 * 25 23 21 28 28 H 1.48496 * 109.47208 * 239.99901 * 25 23 21 29 29 H 1.08995 * 109.46872 * 89.99928 * 1 2 3 30 30 H 1.08997 * 109.47036 * 210.00432 * 1 2 3 31 31 H 1.09003 * 109.47410 * 330.00331 * 1 2 3 32 32 H 1.08997 * 109.47296 * 329.99130 * 3 2 1 33 33 H 1.09007 * 109.46911 * 209.99581 * 3 2 1 34 34 H 1.08994 * 109.46599 * 304.99374 * 4 3 2 35 35 H 1.09001 * 109.46881 * 185.00032 * 4 3 2 36 36 H 1.08004 * 120.01774 * 0.03769 * 7 6 5 37 37 H 1.08000 * 119.95526 * 180.27319 * 8 7 6 38 38 H 1.08001 * 119.93128 * 179.97438 * 9 8 7 39 39 H 1.07998 * 119.98480 * 180.02562 * 10 9 8 40 40 H 1.00905 * 111.00097 * 299.99863 * 17 15 13 41 41 H 1.00902 * 111.00178 * 63.95276 * 17 15 13 42 42 H 1.09000 * 109.47190 * 304.99795 * 18 15 13 43 43 H 1.09002 * 109.47557 * 64.99522 * 18 15 13 44 44 H 1.09000 * 109.47102 * 299.99998 * 19 18 15 45 45 H 1.09005 * 109.47087 * 59.99985 * 19 18 15 46 46 H 1.09002 * 109.46680 * 299.99869 * 20 19 18 47 47 H 1.08996 * 109.47202 * 59.99461 * 20 19 18 48 48 H 0.97005 * 119.99768 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 1.4425 5 8 3.3209 0.7727 2.0814 6 6 3.6503 1.0199 3.3771 7 6 3.1486 2.1416 4.0194 8 6 3.4850 2.3914 5.3362 9 6 4.3210 1.5238 6.0146 10 6 4.8234 0.4042 5.3780 11 6 4.4900 0.1492 4.0599 12 9 4.9804 -0.9452 3.4376 13 6 2.1389 -1.1671 0.0005 14 8 3.3516 -1.1672 0.0001 15 6 1.3853 -2.4723 0.0005 16 1 0.5217 -2.3931 0.6608 17 7 2.2675 -3.5470 0.4747 18 6 0.9139 -2.7890 -1.4202 19 6 0.0440 -4.0475 -1.4002 20 6 -0.4279 -4.3638 -2.8208 21 6 -1.2853 -5.6030 -2.8010 22 1 -1.4743 -6.1141 -1.8684 23 6 -1.8285 -6.0844 -3.9732 24 7 -1.5987 -5.4618 -5.1087 25 14 -2.8918 -7.6200 -3.9487 26 1 -2.9963 -8.1274 -2.5569 27 1 -4.2470 -7.2920 -4.4595 28 1 -2.2769 -8.6617 -4.8099 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6085 2.0284 -0.5139 33 1 3.1500 1.1384 -0.5138 34 1 1.5061 1.7551 1.9814 35 1 2.9180 2.6961 1.4438 36 1 2.4950 2.8198 3.4909 37 1 3.0906 3.2628 5.8376 38 1 4.5826 1.7218 7.0436 39 1 5.4759 -0.2721 5.9103 40 1 3.0763 -3.6404 -0.1213 41 1 2.5409 -3.3937 1.4338 42 1 0.3324 -1.9514 -1.8052 43 1 1.7794 -2.9557 -2.0616 44 1 0.6256 -4.8851 -1.0151 45 1 -0.8215 -3.8807 -0.7588 46 1 -1.0096 -3.5261 -3.2053 47 1 0.4373 -4.5303 -3.4624 48 1 -1.9805 -5.8006 -5.9335 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594429500.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:17 Heat of formation + Delta-G solvation = -100.453638 kcal Electronic energy + Delta-G solvation = -29329.670832 eV Core-core repulsion = 25106.203750 eV Total energy + Delta-G solvation = -4223.467082 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.91845 -40.54295 -39.88655 -37.84401 -35.88248 -35.57356 -33.30487 -31.37492 -31.28066 -31.06525 -29.61366 -27.81535 -26.82844 -25.46607 -24.01305 -22.84430 -22.58664 -21.53026 -19.97675 -19.08462 -18.84535 -17.43741 -17.28455 -16.92411 -16.68798 -16.28048 -16.06771 -15.72037 -15.37987 -15.25224 -15.09192 -14.73462 -14.41167 -14.23032 -14.05455 -13.59351 -13.21619 -13.11374 -12.93570 -12.82229 -12.71971 -12.54599 -12.31609 -12.14909 -11.93915 -11.68361 -11.48677 -11.35243 -11.29116 -11.07382 -10.71593 -10.53406 -10.37598 -10.03036 -9.56143 -9.34375 -9.18560 -8.99485 -8.82295 -8.52937 -8.44555 -8.27431 -5.93254 -3.94518 0.73141 0.88528 2.63488 2.77003 2.91771 3.19395 3.35368 3.42739 3.47695 3.92464 4.27323 4.40748 4.48932 4.53231 4.59083 4.64753 4.71737 4.76815 4.82834 4.85756 4.93848 4.97646 5.13942 5.18083 5.39555 5.42635 5.47135 5.53190 5.58150 5.64636 5.66037 5.78062 5.96700 6.00471 6.16991 6.25747 6.35394 6.49634 6.86899 6.99580 7.06190 7.14901 7.28406 7.36662 7.62082 7.78029 7.93748 8.08853 8.21843 8.52466 9.13425 9.69113 11.18206 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021922 B = 0.002078 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.938619 B =13473.970201 C =14012.634859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.619 5.619 3 C 0.115 3.885 4 C 0.041 3.959 5 O -0.285 6.285 6 C 0.100 3.900 7 C -0.188 4.188 8 C -0.091 4.091 9 C -0.134 4.134 10 C -0.118 4.118 11 C 0.070 3.930 12 F -0.127 7.127 13 C 0.485 3.515 14 O -0.528 6.528 15 C 0.078 3.922 16 H 0.098 0.902 17 N -0.812 5.812 18 C -0.103 4.103 19 C -0.099 4.099 20 C 0.019 3.981 21 C -0.514 4.514 22 H 0.056 0.944 23 C 0.054 3.946 24 N -0.898 5.898 25 Si 0.890 3.110 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.285 1.285 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.141 0.859 40 H 0.349 0.651 41 H 0.338 0.662 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.043 0.957 46 H 0.012 0.988 47 H 0.014 0.986 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.068 21.957 21.199 31.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.354 5.354 3 C -0.009 4.009 4 C -0.036 4.036 5 O -0.198 6.198 6 C 0.053 3.947 7 C -0.207 4.207 8 C -0.110 4.110 9 C -0.152 4.152 10 C -0.137 4.137 11 C 0.050 3.950 12 F -0.106 7.106 13 C 0.272 3.728 14 O -0.403 6.403 15 C -0.038 4.038 16 H 0.116 0.884 17 N -0.340 5.340 18 C -0.141 4.141 19 C -0.137 4.137 20 C -0.018 4.018 21 C -0.553 4.553 22 H 0.074 0.926 23 C -0.147 4.147 24 N -0.537 5.537 25 Si 0.719 3.281 26 H -0.197 1.197 27 H -0.211 1.211 28 H -0.211 1.211 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.159 0.841 40 H 0.163 0.837 41 H 0.150 0.850 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.030 0.970 47 H 0.032 0.968 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.136 21.219 20.700 31.019 hybrid contribution -0.066 0.170 -0.025 0.184 sum 9.071 21.388 20.675 31.100 Atomic orbital electron populations 1.21935 0.79059 1.03219 1.02737 1.47935 1.07023 1.05635 1.74830 1.21483 0.99239 0.86605 0.93563 1.23403 0.93183 0.92176 0.94795 1.86378 1.63432 1.49082 1.20875 1.19152 0.95826 0.94388 0.85295 1.21172 1.04711 0.98039 0.96730 1.21009 0.97016 0.99319 0.93619 1.20918 0.99168 0.94601 1.00541 1.21068 1.01215 0.99169 0.92205 1.17083 0.99939 0.86478 0.91541 1.91556 1.85930 1.50649 1.82448 1.22482 0.88903 0.86628 0.74817 1.90691 1.13968 1.87173 1.48506 1.21792 0.96042 0.85453 1.00510 0.88416 1.59081 1.24201 1.43399 1.07286 1.21637 1.00434 1.00441 0.91576 1.21532 0.96922 0.94864 1.00376 1.19122 0.95923 0.96241 0.90480 1.21326 1.29905 1.10579 0.93452 0.92615 1.25040 0.96746 0.97201 0.95698 1.69985 1.45418 1.40055 0.98288 0.86560 0.80183 0.83357 0.78050 1.19719 1.21145 1.21101 0.91644 0.90300 0.91437 0.88184 0.88722 0.91732 0.91072 0.84703 0.85159 0.84915 0.84105 0.83674 0.85007 0.91966 0.92040 0.91848 0.93786 0.97006 0.96802 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 9.57 59.85 0.57 1.21 16 2 N -0.62 -6.95 2.86 -181.57 -0.52 -7.47 16 3 C 0.11 1.04 5.86 -4.04 -0.02 1.02 16 4 C 0.04 0.34 5.08 37.16 0.19 0.53 16 5 O -0.29 -3.57 8.79 -27.34 -0.24 -3.81 16 6 C 0.10 1.12 6.69 -39.18 -0.26 0.86 16 7 C -0.19 -1.50 9.04 -39.45 -0.36 -1.86 16 8 C -0.09 -0.60 10.04 -39.59 -0.40 -1.00 16 9 C -0.13 -0.90 10.04 -39.57 -0.40 -1.30 16 10 C -0.12 -1.02 10.02 -39.54 -0.40 -1.41 16 11 C 0.07 0.82 7.31 -39.30 -0.29 0.53 16 12 F -0.13 -1.85 17.11 2.25 0.04 -1.81 16 13 C 0.49 7.12 6.54 -10.98 -0.07 7.05 16 14 O -0.53 -9.41 15.04 -2.17 -0.03 -9.44 16 15 C 0.08 1.14 2.42 -68.86 -0.17 0.98 16 16 H 0.10 1.32 6.31 -51.93 -0.33 0.99 16 17 N -0.81 -12.34 8.44 -5.65 -0.05 -12.38 16 18 C -0.10 -1.76 4.77 -26.73 -0.13 -1.89 16 19 C -0.10 -2.06 5.04 -26.73 -0.13 -2.20 16 20 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 21 C -0.51 -14.84 9.11 -34.44 -0.31 -15.16 16 22 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 23 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 24 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 25 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 26 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 29 H 0.06 0.57 7.65 -51.93 -0.40 0.18 16 30 H 0.08 0.71 5.94 -51.93 -0.31 0.40 16 31 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 32 H 0.10 0.57 8.07 -51.93 -0.42 0.15 16 33 H 0.09 1.07 7.42 -51.92 -0.39 0.68 16 34 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 35 H 0.07 0.43 7.66 -51.93 -0.40 0.03 16 36 H 0.14 0.77 6.30 -52.48 -0.33 0.44 16 37 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 38 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 39 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.35 5.52 8.58 -39.29 -0.34 5.19 16 41 H 0.34 4.76 9.06 -39.29 -0.36 4.40 16 42 H 0.06 1.00 6.94 -51.93 -0.36 0.64 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.06 1.38 7.75 -51.93 -0.40 0.97 16 45 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 398.57 15.07 6.01 6.01 Total: -1.00 -35.78 398.57 -8.83 -44.61 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -7.34 Total: 4.75 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -2.41 Total: -10.79 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.17 Total: -46.53 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.27 Total: -13.25 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.78 -8.83 -44.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594429500.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.847 kcal (2) G-P(sol) polarization free energy of solvation -35.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds