Wall clock time and date at job start Tue Mar 31 2020 21:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 119.99825 * 2 1 4 4 C 1.53004 * 109.47196 * 90.00030 * 3 2 1 5 5 O 1.42893 * 109.47267 * 64.99900 * 4 3 2 6 6 C 1.35956 * 117.00026 * 179.97438 * 5 4 3 7 7 C 1.38657 * 120.06128 * 359.97438 * 6 5 4 8 8 C 1.38184 * 119.96964 * 180.02562 * 7 6 5 9 9 C 1.38265 * 120.09281 * 359.97438 * 8 7 6 10 10 C 1.38248 * 120.12705 * 0.02562 * 9 8 7 11 11 C 1.38332 * 120.03366 * 359.97438 * 10 9 8 12 12 F 1.35103 * 120.05240 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00460 * 179.97438 * 2 1 3 14 14 O 1.21271 * 120.00572 * 179.97438 * 13 2 1 15 15 C 1.50708 * 119.99349 * 0.02562 * 13 2 1 16 16 H 1.08997 * 109.46948 * 319.99660 * 15 13 2 17 17 N 1.46903 * 109.46772 * 199.99625 * 15 13 2 18 18 C 1.53000 * 109.47145 * 79.99903 * 15 13 2 19 19 C 1.53000 * 109.47002 * 184.99851 * 18 15 13 20 20 C 1.53000 * 109.47002 * 179.97438 * 19 18 15 21 21 C 1.50699 * 109.47188 * 180.02562 * 20 19 18 22 22 H 1.08010 * 119.99662 * 359.97438 * 21 20 19 23 23 C 1.37873 * 120.00630 * 179.97438 * 21 20 19 24 24 N 1.31517 * 119.99405 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00605 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46876 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47451 * 119.99684 * 25 23 21 28 28 H 1.48496 * 109.47208 * 239.99901 * 25 23 21 29 29 H 1.08995 * 109.46872 * 89.99928 * 1 2 3 30 30 H 1.08997 * 109.47036 * 210.00432 * 1 2 3 31 31 H 1.09003 * 109.47410 * 330.00331 * 1 2 3 32 32 H 1.08997 * 109.47296 * 329.99130 * 3 2 1 33 33 H 1.09007 * 109.46911 * 209.99581 * 3 2 1 34 34 H 1.08994 * 109.46599 * 304.99374 * 4 3 2 35 35 H 1.09001 * 109.46881 * 185.00032 * 4 3 2 36 36 H 1.08004 * 120.01774 * 0.03769 * 7 6 5 37 37 H 1.08000 * 119.95526 * 180.27319 * 8 7 6 38 38 H 1.08001 * 119.93128 * 179.97438 * 9 8 7 39 39 H 1.07998 * 119.98480 * 180.02562 * 10 9 8 40 40 H 1.00905 * 111.00097 * 299.99863 * 17 15 13 41 41 H 1.00902 * 111.00178 * 63.95276 * 17 15 13 42 42 H 1.09000 * 109.47190 * 304.99795 * 18 15 13 43 43 H 1.09002 * 109.47557 * 64.99522 * 18 15 13 44 44 H 1.09000 * 109.47102 * 299.99998 * 19 18 15 45 45 H 1.09005 * 109.47087 * 59.99985 * 19 18 15 46 46 H 1.09002 * 109.46680 * 299.99869 * 20 19 18 47 47 H 1.08996 * 109.47202 * 59.99461 * 20 19 18 48 48 H 0.97005 * 119.99768 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 1.4425 5 8 3.3209 0.7727 2.0814 6 6 3.6503 1.0199 3.3771 7 6 3.1486 2.1416 4.0194 8 6 3.4850 2.3914 5.3362 9 6 4.3210 1.5238 6.0146 10 6 4.8234 0.4042 5.3780 11 6 4.4900 0.1492 4.0599 12 9 4.9804 -0.9452 3.4376 13 6 2.1389 -1.1671 0.0005 14 8 3.3516 -1.1672 0.0001 15 6 1.3853 -2.4723 0.0005 16 1 0.5217 -2.3931 0.6608 17 7 2.2675 -3.5470 0.4747 18 6 0.9139 -2.7890 -1.4202 19 6 0.0440 -4.0475 -1.4002 20 6 -0.4279 -4.3638 -2.8208 21 6 -1.2853 -5.6030 -2.8010 22 1 -1.4743 -6.1141 -1.8684 23 6 -1.8285 -6.0844 -3.9732 24 7 -1.5987 -5.4618 -5.1087 25 14 -2.8918 -7.6200 -3.9487 26 1 -2.9963 -8.1274 -2.5569 27 1 -4.2470 -7.2920 -4.4595 28 1 -2.2769 -8.6617 -4.8099 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6085 2.0284 -0.5139 33 1 3.1500 1.1384 -0.5138 34 1 1.5061 1.7551 1.9814 35 1 2.9180 2.6961 1.4438 36 1 2.4950 2.8198 3.4909 37 1 3.0906 3.2628 5.8376 38 1 4.5826 1.7218 7.0436 39 1 5.4759 -0.2721 5.9103 40 1 3.0763 -3.6404 -0.1213 41 1 2.5409 -3.3937 1.4338 42 1 0.3324 -1.9514 -1.8052 43 1 1.7794 -2.9557 -2.0616 44 1 0.6256 -4.8851 -1.0151 45 1 -0.8215 -3.8807 -0.7588 46 1 -1.0096 -3.5261 -3.2053 47 1 0.4373 -4.5303 -3.4624 48 1 -1.9805 -5.8006 -5.9335 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594429500.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:16 Heat of formation + Delta-G solvation = -124.272803 kcal Electronic energy + Delta-G solvation = -29330.703709 eV Core-core repulsion = 25106.203750 eV Total energy + Delta-G solvation = -4224.499958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.82733 -41.40552 -40.76973 -38.52431 -37.18066 -36.69091 -35.25410 -33.13325 -32.06836 -31.66385 -30.32212 -29.45996 -27.66849 -26.84171 -25.18976 -23.83725 -23.45829 -22.56017 -21.69262 -20.11947 -19.53793 -18.45118 -18.35826 -18.12660 -17.64255 -17.53708 -17.13710 -16.84533 -16.46117 -16.24306 -16.05845 -15.93555 -15.54366 -15.37238 -14.93488 -14.75287 -14.48334 -14.30559 -13.98145 -13.84656 -13.61788 -13.54259 -13.38075 -13.21227 -13.04194 -12.88928 -12.73427 -12.56596 -12.45405 -12.32725 -12.13776 -12.07840 -11.91321 -11.44632 -11.35172 -11.20704 -10.92773 -10.52456 -9.95953 -9.72458 -9.68243 -9.20882 -8.17097 -6.27358 0.11260 0.26857 1.40757 1.41824 1.55092 1.57278 1.96852 2.15870 2.43455 2.60011 3.15788 3.26745 3.43982 3.65059 3.68572 3.84565 3.92543 4.00275 4.05982 4.12268 4.15595 4.24375 4.30646 4.33603 4.37492 4.51673 4.58083 4.64994 4.67248 4.81938 4.89062 4.97980 4.99034 5.09217 5.13011 5.24626 5.26227 5.33540 5.40870 5.50390 5.60629 5.72614 5.83734 5.93153 5.99694 6.30137 6.30609 6.36290 6.39754 6.90175 7.14831 7.41491 8.94858 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021922 B = 0.002078 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.938619 B =13473.970201 C =14012.634859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.613 5.613 3 C 0.110 3.890 4 C 0.038 3.962 5 O -0.322 6.322 6 C 0.078 3.922 7 C -0.186 4.186 8 C -0.083 4.083 9 C -0.130 4.130 10 C -0.121 4.121 11 C 0.020 3.980 12 F -0.157 7.157 13 C 0.482 3.518 14 O -0.568 6.568 15 C 0.085 3.915 16 H 0.117 0.883 17 N -0.818 5.818 18 C -0.090 4.090 19 C -0.083 4.083 20 C 0.023 3.977 21 C -0.538 4.538 22 H 0.059 0.941 23 C -0.004 4.004 24 N -0.935 5.935 25 Si 0.965 3.035 26 H -0.262 1.262 27 H -0.276 1.276 28 H -0.281 1.281 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.141 0.859 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.160 0.840 37 H 0.167 0.833 38 H 0.165 0.835 39 H 0.152 0.848 40 H 0.343 0.657 41 H 0.344 0.656 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.052 0.948 45 H 0.056 0.944 46 H -0.005 1.005 47 H -0.018 1.018 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.165 24.011 23.549 34.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.346 5.346 3 C -0.013 4.013 4 C -0.038 4.038 5 O -0.236 6.236 6 C 0.031 3.969 7 C -0.204 4.204 8 C -0.101 4.101 9 C -0.148 4.148 10 C -0.140 4.140 11 C 0.001 3.999 12 F -0.136 7.136 13 C 0.268 3.732 14 O -0.447 6.447 15 C -0.031 4.031 16 H 0.134 0.866 17 N -0.346 5.346 18 C -0.128 4.128 19 C -0.120 4.120 20 C -0.014 4.014 21 C -0.576 4.576 22 H 0.077 0.923 23 C -0.201 4.201 24 N -0.575 5.575 25 Si 0.789 3.211 26 H -0.186 1.186 27 H -0.201 1.201 28 H -0.207 1.207 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.158 0.842 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.178 0.822 37 H 0.184 0.816 38 H 0.183 0.817 39 H 0.170 0.830 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.013 0.987 47 H 0.000 1.000 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.201 23.312 23.072 33.580 hybrid contribution 0.512 -0.357 -0.729 0.960 sum 7.714 22.955 22.343 32.949 Atomic orbital electron populations 1.22170 0.77166 1.04974 1.03312 1.47988 1.08250 1.05413 1.72975 1.21745 0.98441 0.86412 0.94680 1.23591 0.93839 0.92537 0.93820 1.86338 1.64558 1.50873 1.21842 1.19439 0.96649 0.95578 0.85219 1.21499 1.04444 0.97069 0.97423 1.21504 0.95708 0.99887 0.93000 1.21357 0.98168 0.93392 1.01846 1.21333 1.01312 1.00212 0.91141 1.17699 1.02225 0.86839 0.93158 1.91463 1.86657 1.52299 1.83214 1.22314 0.88345 0.87594 0.74927 1.90679 1.15560 1.87783 1.50642 1.21660 0.96581 0.85804 0.99024 0.86556 1.59100 1.24009 1.43861 1.07605 1.21422 0.99132 0.99131 0.93160 1.21275 0.97673 0.96198 0.96886 1.19039 0.94189 0.95054 0.93103 1.21748 1.30429 1.11577 0.93811 0.92286 1.25999 0.98153 1.00738 0.95232 1.70114 1.46499 1.41877 0.99044 0.85404 0.78287 0.78860 0.78531 1.18603 1.20121 1.20675 0.91585 0.90576 0.87774 0.84158 0.91645 0.89743 0.88616 0.82245 0.81582 0.81739 0.83045 0.84376 0.84364 0.90672 0.93996 0.92890 0.92509 0.98686 0.99952 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.97 9.57 127.77 1.22 2.19 16 2 N -0.61 -13.10 2.86 -846.75 -2.42 -15.52 16 3 C 0.11 1.85 5.86 86.38 0.51 2.36 16 4 C 0.04 0.56 5.08 71.98 0.37 0.92 16 5 O -0.32 -8.17 8.79 -85.66 -0.75 -8.92 16 6 C 0.08 1.73 6.69 22.53 0.15 1.88 16 7 C -0.19 -2.51 9.04 22.36 0.20 -2.30 16 8 C -0.08 -0.79 10.04 22.26 0.22 -0.57 16 9 C -0.13 -1.39 10.04 22.28 0.22 -1.17 16 10 C -0.12 -2.05 10.02 22.29 0.22 -1.83 16 11 C 0.02 0.51 7.31 22.45 0.16 0.67 16 12 F -0.16 -5.04 17.11 44.97 0.77 -4.27 16 13 C 0.48 14.36 6.54 87.66 0.57 14.94 16 14 O -0.57 -21.31 15.04 4.40 0.07 -21.24 16 15 C 0.08 2.51 2.42 44.17 0.11 2.62 16 16 H 0.12 3.01 6.31 -2.39 -0.02 2.99 16 17 N -0.82 -25.67 8.44 -171.79 -1.45 -27.12 16 18 C -0.09 -3.14 4.77 30.59 0.15 -2.99 16 19 C -0.08 -3.48 5.04 30.59 0.15 -3.32 16 20 C 0.02 1.25 4.97 29.85 0.15 1.40 16 21 C -0.54 -31.40 9.11 25.60 0.23 -31.16 16 22 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 23 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 24 N -0.93 -57.98 13.29 21.45 0.28 -57.69 16 25 Si 0.96 45.23 29.54 68.60 2.03 47.25 16 26 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 27 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 28 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 29 H 0.07 1.01 7.65 -2.39 -0.02 0.99 16 30 H 0.08 1.19 5.94 -2.39 -0.01 1.17 16 31 H 0.10 0.80 8.07 -2.39 -0.02 0.78 16 32 H 0.14 1.17 8.07 -2.39 -0.02 1.15 16 33 H 0.06 1.52 7.42 -2.38 -0.02 1.50 16 34 H 0.08 0.88 7.66 -2.39 -0.02 0.86 16 35 H 0.10 0.90 7.66 -2.39 -0.02 0.88 16 36 H 0.16 1.22 6.30 -2.91 -0.02 1.20 16 37 H 0.17 0.40 8.06 -2.91 -0.02 0.38 16 38 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 39 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 40 H 0.34 11.50 8.58 -89.69 -0.77 10.73 16 41 H 0.34 10.06 9.06 -89.69 -0.81 9.24 16 42 H 0.07 2.40 6.94 -2.39 -0.02 2.39 16 43 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 44 H 0.05 2.33 7.75 -2.39 -0.02 2.31 16 45 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 46 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 47 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 48 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 Total: -1.00 -82.28 398.57 3.03 -79.25 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -0.60 Total: 24.42 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: 5.11 Total: -16.15 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -3.58 Total: -100.33 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.69 Total: -30.16 kcal Atomic # 9 Polarization: -5.04 SS G_CDS: 0.77 Total: -4.27 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -82.28 3.03 -79.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594429500.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.027 kcal (2) G-P(sol) polarization free energy of solvation -82.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds