Wall clock time and date at job start Tue Mar 31 2020 21:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35901 * 116.99954 * 2 1 4 4 C 1.38727 * 120.01405 * 0.23164 * 3 2 1 5 5 C 1.38405 * 120.03342 * 180.27676 * 4 3 2 6 6 F 1.35091 * 119.97571 * 179.76787 * 5 4 3 7 7 C 1.38405 * 120.05340 * 359.74596 * 5 4 3 8 8 C 1.38735 * 120.03016 * 0.02562 * 7 5 4 9 9 O 1.35900 * 120.01329 * 179.97438 * 8 7 5 10 10 C 1.42906 * 116.99736 * 0.02562 * 9 8 7 11 11 C 1.38650 * 120.01330 * 180.02562 * 3 2 1 12 12 C 1.50692 * 120.03487 * 359.97438 * 11 3 2 13 13 N 1.46902 * 109.47106 * 269.72859 * 12 11 3 14 14 C 1.46905 * 111.00157 * 179.97438 * 13 12 11 15 15 C 1.53352 * 109.41726 * 275.12721 * 14 13 12 16 16 C 1.53190 * 109.15070 * 178.67527 * 15 14 13 17 17 N 1.46925 * 108.89356 * 54.57285 * 16 15 14 18 18 C 1.36935 * 120.62758 * 126.30089 * 17 16 15 19 19 H 1.08001 * 120.00088 * 332.62829 * 18 17 16 20 20 C 1.38817 * 119.99782 * 152.62208 * 18 17 16 21 21 N 1.31618 * 119.99923 * 159.36242 * 20 18 17 22 22 Si 1.86801 * 120.00195 * 339.36341 * 20 18 17 23 23 H 1.48501 * 109.47054 * 92.89675 * 22 20 18 24 24 H 1.48497 * 109.47324 * 212.90179 * 22 20 18 25 25 H 1.48501 * 109.46722 * 332.89954 * 22 20 18 26 26 C 1.46926 * 118.73822 * 306.31916 * 17 16 15 27 27 C 1.53037 * 109.46247 * 154.99492 * 14 13 12 28 28 H 1.09000 * 109.46568 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47188 * 299.99985 * 1 2 3 30 30 H 1.08996 * 109.47285 * 60.00264 * 1 2 3 31 31 H 1.08005 * 119.98999 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.98212 * 180.02562 * 7 5 4 33 33 H 1.08998 * 109.47046 * 60.00934 * 10 9 8 34 34 H 1.08996 * 109.46474 * 179.97438 * 10 9 8 35 35 H 1.08998 * 109.47272 * 300.00171 * 10 9 8 36 36 H 1.09000 * 109.47710 * 149.72403 * 12 11 3 37 37 H 1.09000 * 109.47170 * 29.72407 * 12 11 3 38 38 H 1.00894 * 111.00471 * 56.04338 * 13 12 11 39 39 H 1.09008 * 109.45766 * 35.02246 * 14 13 12 40 40 H 1.09004 * 109.68561 * 58.70279 * 15 14 13 41 41 H 1.09004 * 109.47287 * 298.50940 * 15 14 13 42 42 H 1.09004 * 109.58215 * 294.71811 * 16 15 14 43 43 H 1.08997 * 109.58828 * 174.43980 * 16 15 14 44 44 H 0.96999 * 119.99917 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.58248 * 173.39705 * 26 17 16 46 46 H 1.08994 * 109.58922 * 293.68210 * 26 17 16 47 47 H 1.09003 * 109.49698 * 61.43726 * 27 14 13 48 48 H 1.08994 * 109.52761 * 301.35140 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2907 2.3745 0.0049 5 6 1.9185 3.6080 -0.0009 6 9 1.1819 4.7403 -0.0009 7 6 3.3006 3.6822 -0.0063 8 6 4.0583 2.5200 -0.0063 9 8 5.4153 2.5933 -0.0121 10 6 5.9944 3.8998 -0.0173 11 6 3.4305 1.2838 -0.0005 12 6 4.2523 0.0207 -0.0005 13 7 4.5254 -0.3858 1.3844 14 6 5.3259 -1.6170 1.4237 15 6 4.3972 -2.8326 1.3158 16 6 5.2405 -4.1115 1.3240 17 7 6.0974 -4.1087 2.5174 18 6 6.0903 -5.1691 3.3839 19 1 5.2070 -5.7833 3.4783 20 6 7.2184 -5.4546 4.1407 21 7 7.1109 -6.1771 5.2355 22 14 8.8892 -4.8132 3.6053 23 1 9.1547 -3.5107 4.2672 24 1 9.9407 -5.7882 3.9914 25 1 8.9003 -4.6309 2.1315 26 6 6.9619 -2.9465 2.7637 27 6 6.1019 -1.6788 2.7413 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2121 2.3181 0.0091 32 1 3.7893 4.6452 -0.0103 33 1 5.6757 4.4420 0.8729 34 1 7.0811 3.8153 -0.0211 35 1 5.6682 4.4382 -0.9071 36 1 5.1942 0.1999 -0.5190 37 1 3.7022 -0.7707 -0.5097 38 1 3.6680 -0.4957 1.9048 39 1 6.0268 -1.6211 0.5888 40 1 3.8275 -2.7782 0.3881 41 1 3.7123 -2.8430 2.1637 42 1 5.8611 -4.1456 0.4285 43 1 4.5844 -4.9816 1.3471 44 1 7.8991 -6.3763 5.7645 45 1 7.4398 -3.0466 3.7382 46 1 7.7244 -2.8871 1.9871 47 1 5.4009 -1.7000 3.5757 48 1 6.7439 -0.8022 2.8275 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601105805.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:06 Heat of formation + Delta-G solvation = -63.603309 kcal Electronic energy + Delta-G solvation = -30043.156952 eV Core-core repulsion = 25821.287820 eV Total energy + Delta-G solvation = -4221.869132 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.28210 -40.90327 -39.34846 -38.22335 -36.59059 -35.28940 -32.64066 -31.28062 -30.26486 -30.06703 -29.25815 -28.21818 -27.07342 -25.43183 -23.85768 -22.66990 -22.42508 -21.70794 -21.28125 -19.49521 -19.12521 -17.80099 -16.86550 -16.73205 -16.50868 -16.35369 -15.99305 -15.82148 -15.65661 -15.36715 -14.83018 -14.77317 -14.56020 -14.21018 -14.05358 -13.65593 -13.51729 -13.14348 -12.81501 -12.75834 -12.50747 -12.25890 -12.21998 -11.98265 -11.86072 -11.83144 -11.70537 -11.58367 -11.13134 -10.80305 -10.72792 -10.70537 -10.45267 -10.06658 -9.96445 -9.58975 -9.37710 -8.63765 -8.60820 -8.51414 -7.98450 -6.89361 -5.88657 -3.23359 0.81041 0.98347 2.53518 3.19007 3.30840 3.38759 3.53682 3.57729 3.82891 4.44575 4.53010 4.54935 4.57340 4.59845 4.72554 4.81724 4.83216 4.85135 4.88251 5.07138 5.17960 5.21622 5.30861 5.39240 5.43996 5.45529 5.62920 5.67098 5.70305 5.83415 5.91451 5.98449 6.09850 6.12302 6.19575 6.29581 6.41193 6.45155 6.62333 6.72876 6.76140 6.83331 6.92452 7.02325 7.04630 7.39846 7.69658 8.04275 8.39245 9.01951 9.79517 10.18468 11.27592 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017148 B = 0.002773 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.497957 B =10093.852384 C =11248.010932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.301 6.301 3 C 0.199 3.801 4 C -0.283 4.283 5 C 0.175 3.825 6 F -0.135 7.135 7 C -0.284 4.284 8 C 0.214 3.786 9 O -0.291 6.291 10 C 0.024 3.976 11 C -0.155 4.155 12 C 0.118 3.882 13 N -0.677 5.677 14 C 0.097 3.903 15 C -0.160 4.160 16 C 0.153 3.847 17 N -0.607 5.607 18 C -0.257 4.257 19 H 0.084 0.916 20 C 0.021 3.979 21 N -0.911 5.911 22 Si 0.884 3.116 23 H -0.288 1.288 24 H -0.305 1.305 25 H -0.271 1.271 26 C 0.126 3.874 27 C -0.117 4.117 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.338 0.662 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.020 0.980 43 H 0.060 0.940 44 H 0.262 0.738 45 H 0.072 0.928 46 H 0.023 0.977 47 H 0.062 0.938 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.224 21.960 -14.089 28.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.213 6.213 3 C 0.151 3.849 4 C -0.303 4.303 5 C 0.155 3.845 6 F -0.114 7.114 7 C -0.304 4.304 8 C 0.166 3.834 9 O -0.203 6.203 10 C -0.071 4.071 11 C -0.157 4.157 12 C -0.011 4.011 13 N -0.307 5.307 14 C -0.012 4.012 15 C -0.201 4.201 16 C 0.026 3.974 17 N -0.331 5.331 18 C -0.385 4.385 19 H 0.101 0.899 20 C -0.177 4.177 21 N -0.554 5.554 22 Si 0.715 3.285 23 H -0.216 1.216 24 H -0.233 1.233 25 H -0.196 1.196 26 C 0.000 4.000 27 C -0.157 4.157 28 H 0.123 0.877 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.077 0.923 34 H 0.122 0.878 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.061 0.939 38 H 0.156 0.844 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.038 0.962 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.041 0.959 47 H 0.080 0.920 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.389 21.960 -13.895 27.986 hybrid contribution -0.224 0.431 -0.410 0.636 sum -10.613 22.392 -14.305 28.612 Atomic orbital electron populations 1.23166 0.77689 1.04550 1.01580 1.86147 1.21829 1.25655 1.87676 1.18105 0.90682 0.83989 0.92094 1.20965 1.01124 0.90901 1.17297 1.16924 0.88331 0.81460 0.97751 1.91504 1.77079 1.49342 1.93461 1.21009 0.92838 0.99285 1.17275 1.18014 0.82845 0.91627 0.90901 1.86212 1.16178 1.30656 1.87237 1.23159 0.99570 0.82919 1.01414 1.18365 0.90147 0.94415 1.12752 1.20460 0.97906 0.91442 0.91284 1.60756 1.23806 1.34501 1.11641 1.21538 0.94623 0.86387 0.98700 1.22737 0.98932 0.97839 1.00610 1.20830 0.92493 0.95102 0.88971 1.44370 1.47843 1.16518 1.24322 1.18924 0.98246 1.06170 1.15195 0.89858 1.25275 0.97735 0.97674 0.97020 1.69842 1.29403 1.42192 1.13994 0.86925 0.85367 0.76807 0.79450 1.21564 1.23317 1.19596 1.21351 0.92574 0.86480 0.99599 1.21965 0.99079 0.98117 0.96522 0.87666 0.92225 0.92426 0.84116 0.84094 0.92313 0.87757 0.92569 0.90075 0.93899 0.84436 0.91256 0.92978 0.91898 0.96201 0.92149 0.92856 0.90988 0.95903 0.91956 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.30 -3.15 9.53 -19.43 -0.19 -3.34 16 3 C 0.20 2.19 6.65 -39.25 -0.26 1.93 16 4 C -0.28 -2.78 9.01 -39.34 -0.35 -3.14 16 5 C 0.18 1.80 7.29 -39.46 -0.29 1.52 16 6 F -0.14 -1.40 17.26 2.25 0.04 -1.36 16 7 C -0.28 -2.84 9.01 -39.34 -0.35 -3.19 16 8 C 0.21 2.43 6.66 -39.25 -0.26 2.17 16 9 O -0.29 -3.24 9.54 -19.42 -0.19 -3.42 16 10 C 0.02 0.17 9.81 101.05 0.99 1.16 16 11 C -0.15 -1.87 5.42 -104.32 -0.57 -2.44 16 12 C 0.12 1.54 5.17 -4.98 -0.03 1.51 16 13 N -0.68 -9.90 6.24 -107.77 -0.67 -10.57 16 14 C 0.10 1.60 2.43 -67.51 -0.16 1.44 16 15 C -0.16 -2.71 5.36 -26.45 -0.14 -2.86 16 16 C 0.15 3.09 6.50 -3.71 -0.02 3.07 16 17 N -0.61 -14.80 2.77 -172.32 -0.48 -15.28 16 18 C -0.26 -7.35 10.03 -15.06 -0.15 -7.50 16 19 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 20 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 21 N -0.91 -28.45 13.97 55.49 0.78 -27.68 16 22 Si 0.88 22.94 24.34 -169.99 -4.14 18.80 16 23 H -0.29 -7.22 6.62 56.52 0.37 -6.85 16 24 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 25 H -0.27 -6.91 6.64 56.52 0.38 -6.54 16 26 C 0.13 2.84 4.21 -3.71 -0.02 2.83 16 27 C -0.12 -2.21 5.69 -26.61 -0.15 -2.36 16 28 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.34 7.65 -51.93 -0.40 -0.05 16 30 H 0.06 0.30 7.67 -51.93 -0.40 -0.09 16 31 H 0.14 1.09 6.29 -52.48 -0.33 0.76 16 32 H 0.14 1.11 6.29 -52.49 -0.33 0.78 16 33 H 0.06 0.36 7.66 -51.93 -0.40 -0.03 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.30 7.66 -51.93 -0.40 -0.09 16 36 H 0.08 1.09 7.44 -51.93 -0.39 0.70 16 37 H 0.04 0.57 6.79 -51.93 -0.35 0.21 16 38 H 0.34 4.95 8.47 -39.30 -0.33 4.62 16 39 H 0.07 1.16 7.80 -51.92 -0.40 0.76 16 40 H 0.05 0.78 7.43 -51.93 -0.39 0.40 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 44 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 45 H 0.07 1.78 4.50 -51.93 -0.23 1.55 16 46 H 0.02 0.51 7.07 -51.93 -0.37 0.15 16 47 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 48 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -32.66 378.19 -7.29 -39.95 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.28 Total: 1.37 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -0.87 Total: -4.17 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.37 Total: -53.53 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.37 Total: -6.76 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.14 Total: 18.80 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.66 -7.29 -39.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601105805.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.658 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds