Wall clock time and date at job start Tue Mar 31 2020 21:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35901 * 116.99954 * 2 1 4 4 C 1.38727 * 120.01405 * 0.23164 * 3 2 1 5 5 C 1.38405 * 120.03342 * 180.27676 * 4 3 2 6 6 F 1.35091 * 119.97571 * 179.76787 * 5 4 3 7 7 C 1.38405 * 120.05340 * 359.74596 * 5 4 3 8 8 C 1.38735 * 120.03016 * 0.02562 * 7 5 4 9 9 O 1.35900 * 120.01329 * 179.97438 * 8 7 5 10 10 C 1.42906 * 116.99736 * 0.02562 * 9 8 7 11 11 C 1.38650 * 120.01330 * 180.02562 * 3 2 1 12 12 C 1.50692 * 120.03487 * 359.97438 * 11 3 2 13 13 N 1.46902 * 109.47106 * 269.72859 * 12 11 3 14 14 C 1.46905 * 111.00157 * 179.97438 * 13 12 11 15 15 C 1.53352 * 109.41726 * 275.12721 * 14 13 12 16 16 C 1.53190 * 109.15070 * 178.67527 * 15 14 13 17 17 N 1.46925 * 108.89356 * 54.57285 * 16 15 14 18 18 C 1.36935 * 120.62758 * 126.30089 * 17 16 15 19 19 H 1.08001 * 120.00088 * 332.62829 * 18 17 16 20 20 C 1.38817 * 119.99782 * 152.62208 * 18 17 16 21 21 N 1.31618 * 119.99923 * 159.36242 * 20 18 17 22 22 Si 1.86801 * 120.00195 * 339.36341 * 20 18 17 23 23 H 1.48501 * 109.47054 * 92.89675 * 22 20 18 24 24 H 1.48497 * 109.47324 * 212.90179 * 22 20 18 25 25 H 1.48501 * 109.46722 * 332.89954 * 22 20 18 26 26 C 1.46926 * 118.73822 * 306.31916 * 17 16 15 27 27 C 1.53037 * 109.46247 * 154.99492 * 14 13 12 28 28 H 1.09000 * 109.46568 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47188 * 299.99985 * 1 2 3 30 30 H 1.08996 * 109.47285 * 60.00264 * 1 2 3 31 31 H 1.08005 * 119.98999 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.98212 * 180.02562 * 7 5 4 33 33 H 1.08998 * 109.47046 * 60.00934 * 10 9 8 34 34 H 1.08996 * 109.46474 * 179.97438 * 10 9 8 35 35 H 1.08998 * 109.47272 * 300.00171 * 10 9 8 36 36 H 1.09000 * 109.47710 * 149.72403 * 12 11 3 37 37 H 1.09000 * 109.47170 * 29.72407 * 12 11 3 38 38 H 1.00894 * 111.00471 * 56.04338 * 13 12 11 39 39 H 1.09008 * 109.45766 * 35.02246 * 14 13 12 40 40 H 1.09004 * 109.68561 * 58.70279 * 15 14 13 41 41 H 1.09004 * 109.47287 * 298.50940 * 15 14 13 42 42 H 1.09004 * 109.58215 * 294.71811 * 16 15 14 43 43 H 1.08997 * 109.58828 * 174.43980 * 16 15 14 44 44 H 0.96999 * 119.99917 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.58248 * 173.39705 * 26 17 16 46 46 H 1.08994 * 109.58922 * 293.68210 * 26 17 16 47 47 H 1.09003 * 109.49698 * 61.43726 * 27 14 13 48 48 H 1.08994 * 109.52761 * 301.35140 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2907 2.3745 0.0049 5 6 1.9185 3.6080 -0.0009 6 9 1.1819 4.7403 -0.0009 7 6 3.3006 3.6822 -0.0063 8 6 4.0583 2.5200 -0.0063 9 8 5.4153 2.5933 -0.0121 10 6 5.9944 3.8998 -0.0173 11 6 3.4305 1.2838 -0.0005 12 6 4.2523 0.0207 -0.0005 13 7 4.5254 -0.3858 1.3844 14 6 5.3259 -1.6170 1.4237 15 6 4.3972 -2.8326 1.3158 16 6 5.2405 -4.1115 1.3240 17 7 6.0974 -4.1087 2.5174 18 6 6.0903 -5.1691 3.3839 19 1 5.2070 -5.7833 3.4783 20 6 7.2184 -5.4546 4.1407 21 7 7.1109 -6.1771 5.2355 22 14 8.8892 -4.8132 3.6053 23 1 9.1547 -3.5107 4.2672 24 1 9.9407 -5.7882 3.9914 25 1 8.9003 -4.6309 2.1315 26 6 6.9619 -2.9465 2.7637 27 6 6.1019 -1.6788 2.7413 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2121 2.3181 0.0091 32 1 3.7893 4.6452 -0.0103 33 1 5.6757 4.4420 0.8729 34 1 7.0811 3.8153 -0.0211 35 1 5.6682 4.4382 -0.9071 36 1 5.1942 0.1999 -0.5190 37 1 3.7022 -0.7707 -0.5097 38 1 3.6680 -0.4957 1.9048 39 1 6.0268 -1.6211 0.5888 40 1 3.8275 -2.7782 0.3881 41 1 3.7123 -2.8430 2.1637 42 1 5.8611 -4.1456 0.4285 43 1 4.5844 -4.9816 1.3471 44 1 7.8991 -6.3763 5.7645 45 1 7.4398 -3.0466 3.7382 46 1 7.7244 -2.8871 1.9871 47 1 5.4009 -1.7000 3.5757 48 1 6.7439 -0.8022 2.8275 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601105805.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:05 Heat of formation + Delta-G solvation = -85.931023 kcal Electronic energy + Delta-G solvation = -30044.125154 eV Core-core repulsion = 25821.287820 eV Total energy + Delta-G solvation = -4222.837334 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.05646 -41.65917 -40.05195 -39.74666 -37.39132 -36.69299 -34.33149 -32.82851 -31.88237 -30.79134 -30.62340 -28.78649 -27.75873 -26.79083 -25.39364 -24.25140 -23.14214 -23.00601 -22.52446 -21.05255 -19.87766 -18.82803 -18.54200 -17.45421 -17.38088 -17.17438 -17.05783 -16.92459 -16.44917 -16.39210 -15.96498 -15.82765 -15.75736 -15.50440 -15.27247 -15.21311 -14.88259 -14.47024 -14.13012 -14.08756 -13.79486 -13.49027 -13.24371 -13.12979 -13.02535 -12.73733 -12.53423 -12.47016 -12.41962 -12.34620 -12.18645 -12.03381 -11.86714 -11.65703 -11.48333 -11.40377 -11.21031 -10.68592 -9.45703 -9.34631 -9.13932 -8.90797 -8.15450 -5.46573 0.01314 0.23216 1.32096 1.42092 1.52040 1.87881 2.39559 2.43478 2.66534 3.07032 3.07251 3.30960 3.44874 3.77412 3.82286 3.85925 3.90339 3.92878 4.11728 4.29351 4.32514 4.35954 4.39278 4.40684 4.42004 4.50275 4.54827 4.62065 4.73167 4.74190 4.77013 4.81403 4.86964 4.94036 4.95248 5.01899 5.06299 5.15649 5.19848 5.26182 5.28434 5.39967 5.48926 5.88193 6.13260 6.15761 6.24632 6.34107 6.52019 6.93784 7.64468 8.05508 9.04658 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017148 B = 0.002773 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.497957 B =10093.852384 C =11248.010932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.318 6.318 3 C 0.196 3.804 4 C -0.282 4.282 5 C 0.169 3.831 6 F -0.136 7.136 7 C -0.284 4.284 8 C 0.208 3.792 9 O -0.312 6.312 10 C 0.016 3.984 11 C -0.176 4.176 12 C 0.126 3.874 13 N -0.675 5.675 14 C 0.107 3.893 15 C -0.145 4.145 16 C 0.147 3.853 17 N -0.620 5.620 18 C -0.248 4.248 19 H 0.050 0.950 20 C -0.037 4.037 21 N -0.959 5.959 22 Si 0.948 3.052 23 H -0.274 1.274 24 H -0.311 1.311 25 H -0.261 1.261 26 C 0.122 3.878 27 C -0.107 4.107 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.042 0.958 38 H 0.338 0.662 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.050 0.950 42 H 0.035 0.965 43 H 0.052 0.948 44 H 0.261 0.739 45 H 0.048 0.952 46 H 0.033 0.967 47 H 0.047 0.953 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.445 24.452 -15.934 31.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.231 6.231 3 C 0.149 3.851 4 C -0.302 4.302 5 C 0.149 3.851 6 F -0.115 7.115 7 C -0.303 4.303 8 C 0.160 3.840 9 O -0.224 6.224 10 C -0.078 4.078 11 C -0.178 4.178 12 C -0.003 4.003 13 N -0.304 5.304 14 C -0.003 4.003 15 C -0.186 4.186 16 C 0.022 3.978 17 N -0.345 5.345 18 C -0.377 4.377 19 H 0.068 0.932 20 C -0.231 4.231 21 N -0.605 5.605 22 Si 0.777 3.223 23 H -0.201 1.201 24 H -0.240 1.240 25 H -0.185 1.185 26 C -0.003 4.003 27 C -0.147 4.147 28 H 0.136 0.864 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.178 0.822 32 H 0.178 0.822 33 H 0.084 0.916 34 H 0.135 0.865 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.060 0.940 38 H 0.156 0.844 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.051 0.949 47 H 0.066 0.934 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.632 24.499 -15.781 31.021 hybrid contribution -0.285 -0.310 0.131 0.441 sum -10.917 24.189 -15.650 30.810 Atomic orbital electron populations 1.23432 0.75882 1.05811 1.02678 1.86120 1.23778 1.25601 1.87578 1.18155 0.90520 0.84550 0.91896 1.21142 1.02119 0.90362 1.16566 1.17067 0.88594 0.81612 0.97805 1.91504 1.77097 1.49376 1.93476 1.21173 0.92769 0.99782 1.16593 1.18106 0.83209 0.91762 0.90930 1.86177 1.16070 1.32956 1.87217 1.23424 1.00230 0.81673 1.02511 1.18411 0.90690 0.94263 1.14470 1.20360 0.97919 0.92039 0.89936 1.60682 1.23799 1.32999 1.12935 1.21346 0.94640 0.86978 0.97340 1.22578 0.98365 0.96227 1.01420 1.21018 0.92389 0.96666 0.87755 1.44501 1.48803 1.16081 1.25142 1.18875 0.97007 1.06585 1.15276 0.93187 1.25908 1.01266 0.98879 0.97063 1.69971 1.30218 1.44863 1.15470 0.85881 0.80452 0.76527 0.79432 1.20115 1.23979 1.18513 1.21391 0.93120 0.87321 0.98490 1.21813 0.98728 0.96673 0.97481 0.86443 0.91415 0.91002 0.82230 0.82247 0.91620 0.86462 0.91022 0.90469 0.93963 0.84400 0.90698 0.90395 0.93099 0.94735 0.92925 0.92979 0.93403 0.94879 0.93372 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.32 -6.08 9.53 -92.44 -0.88 -6.96 16 3 C 0.20 3.98 6.65 22.49 0.15 4.13 16 4 C -0.28 -4.96 9.01 22.43 0.20 -4.76 16 5 C 0.17 3.13 7.29 22.35 0.16 3.29 16 6 F -0.14 -2.52 17.26 44.97 0.78 -1.75 16 7 C -0.28 -5.07 9.01 22.43 0.20 -4.87 16 8 C 0.21 4.35 6.66 22.49 0.15 4.50 16 9 O -0.31 -6.37 9.54 -92.42 -0.88 -7.25 16 10 C 0.02 0.18 9.81 113.37 1.11 1.29 16 11 C -0.18 -3.98 5.42 -19.67 -0.11 -4.09 16 12 C 0.13 3.06 5.17 85.55 0.44 3.50 16 13 N -0.67 -18.40 6.24 -494.89 -3.09 -21.49 16 14 C 0.11 3.30 2.43 45.04 0.11 3.40 16 15 C -0.15 -4.66 5.36 30.78 0.16 -4.49 16 16 C 0.15 5.79 6.50 86.36 0.56 6.35 16 17 N -0.62 -30.03 2.77 -699.10 -1.94 -31.97 16 18 C -0.25 -14.46 10.03 84.03 0.84 -13.62 16 19 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 20 C -0.04 -2.20 5.23 84.86 0.44 -1.76 16 21 N -0.96 -61.65 13.97 21.65 0.30 -61.34 16 22 Si 0.95 47.80 24.34 68.60 1.67 49.47 16 23 H -0.27 -13.11 6.62 99.48 0.66 -12.45 16 24 H -0.31 -15.85 7.11 99.48 0.71 -15.14 16 25 H -0.26 -12.55 6.64 99.48 0.66 -11.89 16 26 C 0.12 5.35 4.21 86.36 0.36 5.71 16 27 C -0.11 -3.88 5.69 30.67 0.17 -3.70 16 28 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 0.63 7.65 -2.39 -0.02 0.62 16 30 H 0.07 0.58 7.67 -2.39 -0.02 0.56 16 31 H 0.16 2.06 6.29 -2.91 -0.02 2.04 16 32 H 0.16 2.11 6.29 -2.91 -0.02 2.09 16 33 H 0.07 0.66 7.66 -2.39 -0.02 0.65 16 34 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 36 H 0.08 1.93 7.44 -2.39 -0.02 1.91 16 37 H 0.04 1.03 6.79 -2.39 -0.02 1.01 16 38 H 0.34 9.35 8.47 -89.70 -0.76 8.59 16 39 H 0.07 2.28 7.80 -2.38 -0.02 2.26 16 40 H 0.08 2.13 7.43 -2.38 -0.02 2.11 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.05 2.12 7.93 -2.39 -0.02 2.10 16 44 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 45 H 0.05 2.32 4.50 -2.39 -0.01 2.31 16 46 H 0.03 1.40 7.07 -2.39 -0.02 1.38 16 47 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -70.96 378.19 2.18 -68.79 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.13 Total: 16.32 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 6.09 Total: -3.81 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -4.72 Total: -114.80 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -1.76 Total: -14.21 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.78 Total: -1.75 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 1.67 Total: 49.47 kcal Total: -70.96 2.18 -68.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601105805.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.145 kcal (2) G-P(sol) polarization free energy of solvation -70.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds