Wall clock time and date at job start Tue Mar 31 2020 21:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00098 * 2 1 4 4 H 1.48496 * 109.47306 * 240.00225 * 3 2 1 5 5 H 1.48498 * 109.46893 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46955 * 120.00188 * 3 2 1 7 7 C 1.37882 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00222 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00062 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47416 * 185.00742 * 9 7 2 11 11 C 1.46955 * 111.00212 * 295.17985 * 10 9 7 12 12 C 1.53045 * 109.36922 * 183.18424 * 11 10 9 13 13 N 1.46960 * 109.36445 * 301.59973 * 12 11 10 14 14 C 1.38535 * 110.99661 * 183.18566 * 13 12 11 15 15 C 1.39675 * 120.52863 * 180.02562 * 14 13 12 16 16 C 1.38072 * 118.33199 * 180.02562 * 15 14 13 17 17 N 1.32580 * 119.20247 * 359.97438 * 16 15 14 18 18 C 1.31762 * 121.01499 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.08554 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47154 * 90.00287 * 19 18 17 21 21 C 1.38237 * 119.99809 * 269.72806 * 20 19 18 22 22 C 1.38239 * 119.99859 * 179.76946 * 21 20 19 23 23 C 1.38227 * 119.99981 * 0.47978 * 22 21 20 24 24 C 1.38236 * 120.00199 * 359.79107 * 23 22 21 25 25 C 1.38230 * 119.99803 * 359.95909 * 24 23 22 26 26 N 1.31782 * 121.82592 * 359.71462 * 18 17 16 27 27 C 1.46951 * 110.88084 * 59.31894 * 13 12 11 28 28 C 1.46960 * 110.99809 * 58.97742 * 10 9 7 29 29 H 0.96993 * 119.99944 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47414 * 65.00387 * 9 7 2 31 31 H 1.09001 * 109.46823 * 305.00659 * 9 7 2 32 32 H 1.09003 * 109.48953 * 63.21247 * 11 10 9 33 33 H 1.09001 * 109.48808 * 303.15741 * 11 10 9 34 34 H 1.08993 * 109.49333 * 181.62569 * 12 11 10 35 35 H 1.09010 * 109.50455 * 61.57507 * 12 11 10 36 36 H 1.07995 * 120.83413 * 0.02562 * 15 14 13 37 37 H 1.08006 * 120.40138 * 180.02562 * 16 15 14 38 38 H 1.09002 * 109.46909 * 210.00082 * 19 18 17 39 39 H 1.08999 * 109.47139 * 329.99852 * 19 18 17 40 40 H 1.08004 * 119.99903 * 359.97438 * 21 20 19 41 41 H 1.08004 * 119.99537 * 180.25022 * 22 21 20 42 42 H 1.08002 * 120.00013 * 179.77367 * 23 22 21 43 43 H 1.07999 * 120.00547 * 179.97438 * 24 23 22 44 44 H 1.08006 * 120.00342 * 179.97438 * 25 24 23 45 45 H 1.09000 * 109.49359 * 60.64622 * 27 13 12 46 46 H 1.08998 * 109.49276 * 180.71254 * 27 13 12 47 47 H 1.09007 * 109.48952 * 296.77644 * 28 10 9 48 48 H 1.08993 * 109.49235 * 56.84164 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2010 -3.6132 0.1188 11 6 3.0790 -3.6863 -1.0574 12 6 3.9976 -4.9037 -0.9302 13 7 4.7855 -4.7926 0.3054 14 6 5.6814 -5.8432 0.4190 15 6 6.5321 -5.9340 1.5230 16 6 7.4075 -6.9997 1.5899 17 7 7.4120 -7.8954 0.6124 18 6 6.5966 -7.7817 -0.4164 19 6 6.6389 -8.8246 -1.5033 20 6 5.6733 -9.9335 -1.1733 21 6 6.0982 -11.0238 -0.4375 22 6 5.2112 -12.0388 -0.1307 23 6 3.9019 -11.9681 -0.5682 24 6 3.4784 -10.8805 -1.3089 25 6 4.3640 -9.8631 -1.6112 26 7 5.7417 -6.7840 -0.5186 27 6 3.9076 -4.7196 1.4816 28 6 2.9889 -3.5021 1.3544 29 1 -0.4850 0.8400 0.0004 30 1 0.6937 -2.5962 -0.9334 31 1 0.5586 -2.5196 0.8398 32 1 3.6821 -2.7803 -1.1179 33 1 2.4727 -3.7807 -1.9584 34 1 4.6694 -4.9436 -1.7875 35 1 3.3958 -5.8120 -0.8973 36 1 6.5059 -5.1893 2.3047 37 1 8.0799 -7.1028 2.4288 38 1 6.3593 -8.3702 -2.4538 39 1 7.6475 -9.2312 -1.5777 40 1 7.1224 -11.0812 -0.0994 41 1 5.5423 -12.8887 0.4477 42 1 3.2099 -12.7628 -0.3317 43 1 2.4555 -10.8254 -1.6511 44 1 4.0333 -9.0135 -2.1902 45 1 3.3045 -5.6255 1.5421 46 1 4.5138 -4.6252 2.3825 47 1 3.5911 -2.5941 1.3213 48 1 2.3171 -3.4622 2.2117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601261881.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:42 Heat of formation + Delta-G solvation = 91.952403 kcal Electronic energy + Delta-G solvation = -28616.442505 eV Core-core repulsion = 24864.380751 eV Total energy + Delta-G solvation = -3752.061754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.30372 -39.41903 -38.74367 -35.75484 -34.10843 -33.00078 -32.21220 -31.05547 -30.99957 -30.46079 -27.89031 -27.46421 -25.33338 -24.04359 -23.12736 -22.64703 -22.48405 -21.68543 -21.04827 -19.36873 -17.60652 -17.46330 -16.88896 -16.38942 -15.65423 -15.43075 -15.25965 -15.16949 -14.86705 -14.54996 -14.38558 -14.31143 -14.12062 -13.61361 -13.54430 -13.35198 -13.18406 -12.99422 -12.55991 -12.29945 -12.08090 -11.97761 -11.39233 -11.19283 -11.13418 -11.09617 -10.98661 -10.80839 -10.79995 -10.58099 -10.49323 -10.19151 -9.92953 -9.79531 -9.62404 -9.25449 -9.06180 -8.90220 -8.47407 -8.35798 -7.28293 -6.07239 -4.16553 0.86648 1.12340 1.20813 1.26366 3.26070 3.31303 3.33807 3.36479 3.59670 3.75858 4.03018 4.17969 4.37141 4.65753 4.70461 4.78125 4.85920 4.92389 4.99512 5.07216 5.17113 5.17420 5.23092 5.31213 5.35129 5.41806 5.46770 5.54731 5.57017 5.67826 5.69375 5.83965 5.90110 5.91503 5.95436 6.15618 6.23047 6.29995 6.36456 6.46152 6.49340 6.60513 6.69103 6.73514 6.84416 7.12767 7.15348 7.24307 7.46606 7.84413 7.94842 8.15114 8.17050 8.23020 8.93188 9.50620 10.98029 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017475 B = 0.002520 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.892396 B =11110.046926 C =12013.007944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.552 4.552 8 H 0.058 0.942 9 C 0.188 3.812 10 N -0.544 5.544 11 C 0.059 3.941 12 C 0.071 3.929 13 N -0.470 5.470 14 C 0.369 3.631 15 C -0.252 4.252 16 C 0.161 3.839 17 N -0.544 5.544 18 C 0.349 3.651 19 C -0.011 4.011 20 C -0.081 4.081 21 C -0.105 4.105 22 C -0.125 4.125 23 C -0.121 4.121 24 C -0.122 4.122 25 C -0.102 4.102 26 N -0.550 5.550 27 C 0.066 3.934 28 C 0.064 3.936 29 H 0.263 0.737 30 H 0.029 0.971 31 H 0.036 0.964 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.146 0.854 37 H 0.166 0.834 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.050 0.950 46 H 0.080 0.920 47 H 0.054 0.946 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.713 -21.101 0.720 24.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.591 4.591 8 H 0.076 0.924 9 C 0.063 3.937 10 N -0.268 5.268 11 C -0.070 4.070 12 C -0.055 4.055 13 N -0.187 5.187 14 C 0.127 3.873 15 C -0.277 4.277 16 C -0.002 4.002 17 N -0.261 5.261 18 C 0.079 3.921 19 C -0.050 4.050 20 C -0.082 4.082 21 C -0.123 4.123 22 C -0.143 4.143 23 C -0.139 4.139 24 C -0.140 4.140 25 C -0.120 4.120 26 N -0.271 5.271 27 C -0.060 4.060 28 C -0.066 4.066 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.164 0.836 37 H 0.183 0.817 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.144 0.856 45 H 0.069 0.931 46 H 0.098 0.902 47 H 0.072 0.928 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.479 -21.560 0.033 24.911 hybrid contribution 0.512 2.036 0.752 2.230 sum 12.990 -19.524 0.785 23.463 Atomic orbital electron populations 1.69928 1.06022 1.27021 1.49912 1.24958 0.94757 0.99159 0.94827 0.86699 0.79676 0.83238 0.78670 1.20245 1.21198 1.20251 1.21704 0.93338 0.92022 1.52002 0.92409 1.19736 0.90732 0.85321 0.97945 1.62733 1.16864 1.46596 1.00613 1.22047 0.94318 0.95777 0.94888 1.22200 0.94751 0.99044 0.89537 1.59006 1.18638 1.34345 1.06697 1.20265 0.92257 0.86033 0.88696 1.22367 1.00977 1.02973 1.01383 1.22932 0.93794 0.88121 0.95339 1.68186 1.25094 1.29749 1.03056 1.22641 0.86081 0.91067 0.92279 1.19324 0.99943 0.90764 0.94980 1.19562 0.94432 0.95043 0.99131 1.21095 1.00020 0.93538 0.97611 1.21125 0.93799 0.98959 1.00451 1.21175 0.96089 0.98329 0.98346 1.21176 0.99704 0.94245 0.98887 1.21160 0.92752 0.98555 0.99504 1.68217 1.24192 1.03243 1.31402 1.22477 0.93354 1.00311 0.89846 1.21966 0.94964 0.94949 0.94674 0.92701 0.95308 0.94627 0.93366 0.90636 0.90088 0.92639 0.83638 0.81725 0.88314 0.88334 0.85764 0.86183 0.86258 0.85975 0.85586 0.93114 0.90181 0.92769 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.55 -14.77 7.66 -34.44 -0.26 -15.03 16 8 H 0.06 1.54 5.82 -52.49 -0.31 1.24 16 9 C 0.19 4.70 5.14 -4.98 -0.03 4.68 16 10 N -0.54 -11.30 4.92 -235.91 -1.16 -12.46 16 11 C 0.06 1.12 5.32 -3.77 -0.02 1.10 16 12 C 0.07 1.17 4.80 -3.77 -0.02 1.15 16 13 N -0.47 -7.43 4.73 -172.86 -0.82 -8.25 16 14 C 0.37 5.40 6.41 -154.79 -0.99 4.40 16 15 C -0.25 -3.06 9.30 -39.11 -0.36 -3.43 16 16 C 0.16 1.77 11.29 -17.29 -0.20 1.58 16 17 N -0.54 -6.84 10.33 -10.81 -0.11 -6.95 16 18 C 0.35 4.53 6.88 -157.24 -1.08 3.45 16 19 C -0.01 -0.11 5.78 -29.04 -0.17 -0.28 16 20 C -0.08 -0.86 5.12 -104.62 -0.54 -1.40 16 21 C -0.10 -1.04 9.70 -39.58 -0.38 -1.42 16 22 C -0.13 -1.15 10.05 -39.58 -0.40 -1.55 16 23 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16 24 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 25 C -0.10 -1.10 9.70 -39.59 -0.38 -1.49 16 26 N -0.55 -7.98 8.77 -9.96 -0.09 -8.07 16 27 C 0.07 1.00 5.37 -3.77 -0.02 0.98 16 28 C 0.06 1.18 5.24 -3.76 -0.02 1.16 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.03 0.77 8.12 -51.93 -0.42 0.35 16 31 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 1.02 6.78 -51.93 -0.35 0.67 16 33 H 0.08 1.42 8.12 -51.93 -0.42 1.00 16 34 H 0.08 1.28 7.85 -51.93 -0.41 0.87 16 35 H 0.06 0.93 8.06 -51.92 -0.42 0.51 16 36 H 0.15 1.50 7.26 -52.49 -0.38 1.12 16 37 H 0.17 1.22 8.06 -52.48 -0.42 0.80 16 38 H 0.10 0.94 8.09 -51.93 -0.42 0.52 16 39 H 0.10 0.86 8.08 -51.93 -0.42 0.44 16 40 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 41 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 42 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 44 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 1.03 6.86 -51.93 -0.36 0.67 16 47 H 0.05 1.12 6.62 -51.92 -0.34 0.77 16 48 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 388.93 15.07 5.86 5.86 Total: -1.00 -30.52 388.93 -13.55 -44.07 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.19 Total: 2.17 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -5.76 Total: -7.51 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -1.44 Total: -60.75 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.52 -13.55 -44.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601261881.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.021 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds