Wall clock time and date at job start Tue Mar 31 2020 21:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00098 * 2 1 4 4 H 1.48496 * 109.47306 * 240.00225 * 3 2 1 5 5 H 1.48498 * 109.46893 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46955 * 120.00188 * 3 2 1 7 7 C 1.37882 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00222 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00062 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47416 * 185.00742 * 9 7 2 11 11 C 1.46955 * 111.00212 * 295.17985 * 10 9 7 12 12 C 1.53045 * 109.36922 * 183.18424 * 11 10 9 13 13 N 1.46960 * 109.36445 * 301.59973 * 12 11 10 14 14 C 1.38535 * 110.99661 * 183.18566 * 13 12 11 15 15 C 1.39675 * 120.52863 * 180.02562 * 14 13 12 16 16 C 1.38072 * 118.33199 * 180.02562 * 15 14 13 17 17 N 1.32580 * 119.20247 * 359.97438 * 16 15 14 18 18 C 1.31762 * 121.01499 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.08554 * 179.97438 * 18 17 16 20 20 C 1.50697 * 109.47154 * 90.00287 * 19 18 17 21 21 C 1.38237 * 119.99809 * 269.72806 * 20 19 18 22 22 C 1.38239 * 119.99859 * 179.76946 * 21 20 19 23 23 C 1.38227 * 119.99981 * 0.47978 * 22 21 20 24 24 C 1.38236 * 120.00199 * 359.79107 * 23 22 21 25 25 C 1.38230 * 119.99803 * 359.95909 * 24 23 22 26 26 N 1.31782 * 121.82592 * 359.71462 * 18 17 16 27 27 C 1.46951 * 110.88084 * 59.31894 * 13 12 11 28 28 C 1.46960 * 110.99809 * 58.97742 * 10 9 7 29 29 H 0.96993 * 119.99944 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47414 * 65.00387 * 9 7 2 31 31 H 1.09001 * 109.46823 * 305.00659 * 9 7 2 32 32 H 1.09003 * 109.48953 * 63.21247 * 11 10 9 33 33 H 1.09001 * 109.48808 * 303.15741 * 11 10 9 34 34 H 1.08993 * 109.49333 * 181.62569 * 12 11 10 35 35 H 1.09010 * 109.50455 * 61.57507 * 12 11 10 36 36 H 1.07995 * 120.83413 * 0.02562 * 15 14 13 37 37 H 1.08006 * 120.40138 * 180.02562 * 16 15 14 38 38 H 1.09002 * 109.46909 * 210.00082 * 19 18 17 39 39 H 1.08999 * 109.47139 * 329.99852 * 19 18 17 40 40 H 1.08004 * 119.99903 * 359.97438 * 21 20 19 41 41 H 1.08004 * 119.99537 * 180.25022 * 22 21 20 42 42 H 1.08002 * 120.00013 * 179.77367 * 23 22 21 43 43 H 1.07999 * 120.00547 * 179.97438 * 24 23 22 44 44 H 1.08006 * 120.00342 * 179.97438 * 25 24 23 45 45 H 1.09000 * 109.49359 * 60.64622 * 27 13 12 46 46 H 1.08998 * 109.49276 * 180.71254 * 27 13 12 47 47 H 1.09007 * 109.48952 * 296.77644 * 28 10 9 48 48 H 1.08993 * 109.49235 * 56.84164 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2010 -3.6132 0.1188 11 6 3.0790 -3.6863 -1.0574 12 6 3.9976 -4.9037 -0.9302 13 7 4.7855 -4.7926 0.3054 14 6 5.6814 -5.8432 0.4190 15 6 6.5321 -5.9340 1.5230 16 6 7.4075 -6.9997 1.5899 17 7 7.4120 -7.8954 0.6124 18 6 6.5966 -7.7817 -0.4164 19 6 6.6389 -8.8246 -1.5033 20 6 5.6733 -9.9335 -1.1733 21 6 6.0982 -11.0238 -0.4375 22 6 5.2112 -12.0388 -0.1307 23 6 3.9019 -11.9681 -0.5682 24 6 3.4784 -10.8805 -1.3089 25 6 4.3640 -9.8631 -1.6112 26 7 5.7417 -6.7840 -0.5186 27 6 3.9076 -4.7196 1.4816 28 6 2.9889 -3.5021 1.3544 29 1 -0.4850 0.8400 0.0004 30 1 0.6937 -2.5962 -0.9334 31 1 0.5586 -2.5196 0.8398 32 1 3.6821 -2.7803 -1.1179 33 1 2.4727 -3.7807 -1.9584 34 1 4.6694 -4.9436 -1.7875 35 1 3.3958 -5.8120 -0.8973 36 1 6.5059 -5.1893 2.3047 37 1 8.0799 -7.1028 2.4288 38 1 6.3593 -8.3702 -2.4538 39 1 7.6475 -9.2312 -1.5777 40 1 7.1224 -11.0812 -0.0994 41 1 5.5423 -12.8887 0.4477 42 1 3.2099 -12.7628 -0.3317 43 1 2.4555 -10.8254 -1.6511 44 1 4.0333 -9.0135 -2.1902 45 1 3.3045 -5.6255 1.5421 46 1 4.5138 -4.6252 2.3825 47 1 3.5911 -2.5941 1.3213 48 1 2.3171 -3.4622 2.2117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601261881.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:41 Heat of formation + Delta-G solvation = 74.740812 kcal Electronic energy + Delta-G solvation = -28617.188856 eV Core-core repulsion = 24864.380751 eV Total energy + Delta-G solvation = -3752.808104 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.31251 -40.38137 -39.87120 -37.24289 -34.96987 -34.70270 -33.56687 -32.22717 -31.75530 -31.68817 -29.56465 -28.30927 -27.07418 -25.19440 -24.49135 -23.64505 -23.43782 -23.15887 -21.91349 -20.90921 -18.84510 -18.44056 -18.31426 -17.64466 -16.87368 -16.57435 -16.35584 -16.11397 -15.96734 -15.90491 -15.73540 -15.54438 -15.46893 -14.91853 -14.72415 -14.42804 -14.25686 -13.94602 -13.82025 -13.62318 -13.30857 -13.04979 -12.96707 -12.89816 -12.53121 -12.35753 -12.25997 -12.14292 -12.01445 -11.93209 -11.84345 -11.78909 -11.59114 -11.52955 -10.78155 -10.61539 -10.24691 -9.80381 -9.65240 -9.49728 -9.09420 -8.17125 -6.36127 -0.06415 0.15376 0.44653 0.52042 1.37023 1.37822 1.46131 2.29614 2.36493 2.75576 2.82044 3.08331 3.16331 3.25831 3.28687 3.75128 3.90509 3.93065 3.99734 4.05884 4.18087 4.20727 4.23925 4.31651 4.34123 4.40410 4.41441 4.51604 4.56840 4.60330 4.64242 4.76445 4.81025 4.83235 4.94013 5.02224 5.10308 5.13813 5.18559 5.19719 5.31207 5.34322 5.49401 5.58104 5.63811 5.71388 5.72105 5.94144 6.02344 6.12738 6.18375 6.20979 6.42844 6.83288 7.18626 7.35298 8.85699 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017475 B = 0.002520 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.892396 B =11110.046926 C =12013.007944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.556 4.556 8 H 0.056 0.944 9 C 0.202 3.798 10 N -0.544 5.544 11 C 0.064 3.936 12 C 0.090 3.910 13 N -0.480 5.480 14 C 0.345 3.655 15 C -0.250 4.250 16 C 0.165 3.835 17 N -0.548 5.548 18 C 0.339 3.661 19 C -0.008 4.008 20 C -0.090 4.090 21 C -0.112 4.112 22 C -0.129 4.129 23 C -0.127 4.127 24 C -0.135 4.135 25 C -0.120 4.120 26 N -0.568 5.568 27 C 0.078 3.922 28 C 0.066 3.934 29 H 0.265 0.735 30 H 0.004 0.996 31 H 0.011 0.989 32 H 0.027 0.973 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.166 0.834 37 H 0.205 0.795 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.135 0.865 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.132 0.868 44 H 0.119 0.881 45 H 0.048 0.952 46 H 0.112 0.888 47 H 0.034 0.966 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.066 -22.297 1.990 26.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.595 4.595 8 H 0.075 0.925 9 C 0.075 3.925 10 N -0.268 5.268 11 C -0.065 4.065 12 C -0.037 4.037 13 N -0.197 5.197 14 C 0.105 3.895 15 C -0.274 4.274 16 C 0.002 3.998 17 N -0.265 5.265 18 C 0.070 3.930 19 C -0.047 4.047 20 C -0.091 4.091 21 C -0.130 4.130 22 C -0.147 4.147 23 C -0.145 4.145 24 C -0.153 4.153 25 C -0.138 4.138 26 N -0.289 5.289 27 C -0.047 4.047 28 C -0.063 4.063 29 H 0.074 0.926 30 H 0.022 0.978 31 H 0.029 0.971 32 H 0.045 0.955 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.184 0.816 37 H 0.222 0.778 38 H 0.118 0.882 39 H 0.132 0.868 40 H 0.153 0.847 41 H 0.161 0.839 42 H 0.158 0.842 43 H 0.150 0.850 44 H 0.137 0.863 45 H 0.066 0.934 46 H 0.130 0.870 47 H 0.053 0.947 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 14.856 -22.781 1.301 27.228 hybrid contribution -0.194 2.288 0.375 2.327 sum 14.662 -20.493 1.677 25.253 Atomic orbital electron populations 1.70048 1.07524 1.27973 1.50930 1.25786 0.95571 1.02744 0.94499 0.85647 0.78427 0.78934 0.78922 1.19786 1.20722 1.19357 1.21915 0.93328 0.92841 1.51417 0.92542 1.19385 0.91082 0.86479 0.95509 1.62650 1.17463 1.44409 1.02307 1.22002 0.94070 0.96293 0.94103 1.21903 0.94222 0.96935 0.90671 1.59034 1.18680 1.35886 1.06094 1.20387 0.92759 0.86217 0.90113 1.22620 1.00263 1.03687 1.00866 1.23608 0.93514 0.86949 0.95695 1.68278 1.24813 1.30165 1.03252 1.23058 0.85850 0.91039 0.93038 1.19379 1.00762 0.90237 0.94329 1.19644 0.94351 0.95505 0.99641 1.21300 1.00783 0.93468 0.97450 1.21456 0.93644 0.99399 1.00157 1.21483 0.96713 0.98506 0.97752 1.21405 1.00194 0.94454 0.99205 1.21247 0.93386 0.98903 1.00261 1.68177 1.25054 1.03836 1.31841 1.22355 0.93176 0.98082 0.91132 1.21969 0.94959 0.95998 0.93398 0.92561 0.97807 0.97050 0.95491 0.91026 0.89540 0.93152 0.81627 0.77801 0.88224 0.86831 0.84665 0.83901 0.84171 0.85037 0.86300 0.93377 0.87009 0.94742 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.63 13.29 21.45 0.28 -54.34 16 2 C 0.01 0.76 5.46 84.66 0.46 1.23 16 3 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.56 -30.46 7.66 25.60 0.20 -30.26 16 8 H 0.06 3.07 5.82 -2.91 -0.02 3.05 16 9 C 0.20 10.53 5.14 85.56 0.44 10.97 16 10 N -0.54 -23.27 4.92 -900.28 -4.43 -27.70 16 11 C 0.06 2.52 5.32 86.31 0.46 2.98 16 12 C 0.09 2.95 4.80 86.31 0.41 3.36 16 13 N -0.48 -14.72 4.73 -700.80 -3.32 -18.04 16 14 C 0.35 9.57 6.41 133.19 0.85 10.42 16 15 C -0.25 -5.35 9.30 22.58 0.21 -5.14 16 16 C 0.17 3.08 11.29 84.54 0.95 4.04 16 17 N -0.55 -12.40 10.33 -188.12 -1.94 -14.34 16 18 C 0.34 8.33 6.88 138.76 0.95 9.28 16 19 C -0.01 -0.16 5.78 29.10 0.17 0.01 16 20 C -0.09 -1.85 5.12 -19.87 -0.10 -1.95 16 21 C -0.11 -2.03 9.70 22.27 0.22 -1.81 16 22 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 23 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 24 C -0.13 -2.61 10.05 22.27 0.22 -2.39 16 25 C -0.12 -2.59 9.70 22.27 0.22 -2.38 16 26 N -0.57 -15.96 8.77 -185.43 -1.63 -17.58 16 27 C 0.08 2.28 5.37 86.31 0.46 2.75 16 28 C 0.07 2.45 5.24 86.31 0.45 2.90 16 29 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 30 H 0.00 0.21 8.12 -2.38 -0.02 0.19 16 31 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.03 1.17 6.78 -2.39 -0.02 1.15 16 33 H 0.07 2.80 8.12 -2.39 -0.02 2.79 16 34 H 0.09 2.74 7.85 -2.39 -0.02 2.73 16 35 H 0.05 1.70 8.06 -2.38 -0.02 1.69 16 36 H 0.17 2.80 7.26 -2.91 -0.02 2.78 16 37 H 0.21 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.10 1.88 8.09 -2.39 -0.02 1.86 16 39 H 0.11 1.82 8.08 -2.39 -0.02 1.80 16 40 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 41 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 42 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 43 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 44 H 0.12 2.62 8.06 -2.91 -0.02 2.60 16 45 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 46 H 0.11 2.57 6.86 -2.39 -0.02 2.55 16 47 H 0.03 1.43 6.62 -2.38 -0.02 1.41 16 48 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -66.63 388.93 -1.02 -67.66 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.95 Total: 18.47 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 7.03 Total: 0.21 kcal Atomic # 7 Polarization: -120.98 SS G_CDS: -11.03 Total: -132.01 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -66.63 -1.02 -67.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601261881.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.397 kcal (2) G-P(sol) polarization free energy of solvation -66.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds