Wall clock time and date at job start Tue Mar 31 2020 20:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46899 * 109.46986 * 120.00260 * 2 1 3 13 13 C 1.46902 * 111.00131 * 274.99873 * 12 2 1 14 14 C 1.50699 * 109.47145 * 180.02562 * 13 12 2 15 15 O 1.21280 * 120.00030 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99779 * 180.02562 * 14 13 12 17 17 C 1.46502 * 120.00096 * 0.02562 * 16 14 13 18 18 C 1.46496 * 120.00083 * 179.97438 * 16 14 13 19 19 C 1.53001 * 109.47037 * 89.99958 * 18 16 14 20 20 C 1.52996 * 109.47140 * 180.02562 * 19 18 16 21 21 O 1.42901 * 109.47094 * 180.02562 * 20 19 18 22 22 C 1.35945 * 116.99986 * 180.02562 * 21 20 19 23 23 C 1.38713 * 120.03153 * 359.71950 * 22 21 20 24 24 C 1.38152 * 119.96804 * 179.78873 * 23 22 21 25 25 C 1.38452 * 120.03240 * 0.49352 * 24 23 22 26 26 F 1.35100 * 119.97294 * 179.72015 * 25 24 23 27 27 C 1.38456 * 120.05882 * 359.73991 * 25 24 23 28 28 C 1.38145 * 120.03206 * 0.02562 * 27 25 24 29 29 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 30 30 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 32 32 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 33 33 H 1.00898 * 110.99583 * 151.04841 * 12 2 1 34 34 H 1.08997 * 109.46953 * 300.00617 * 13 12 2 35 35 H 1.09002 * 109.46573 * 60.00322 * 13 12 2 36 36 H 1.08997 * 109.47255 * 89.99897 * 17 16 14 37 37 H 1.09002 * 109.47107 * 210.00124 * 17 16 14 38 38 H 1.09002 * 109.47066 * 329.99677 * 17 16 14 39 39 H 1.09001 * 109.47421 * 210.00305 * 18 16 14 40 40 H 1.09005 * 109.46932 * 330.00316 * 18 16 14 41 41 H 1.09001 * 109.47298 * 300.00421 * 19 18 16 42 42 H 1.09005 * 109.46967 * 60.00380 * 19 18 16 43 43 H 1.09001 * 109.47162 * 300.00251 * 20 19 18 44 44 H 1.08996 * 109.47663 * 60.00223 * 20 19 18 45 45 H 1.08001 * 120.01319 * 0.02562 * 23 22 21 46 46 H 1.07998 * 119.98331 * 180.21370 * 24 23 22 47 47 H 1.08002 * 119.98545 * 180.02562 * 27 25 24 48 48 H 1.08000 * 120.01578 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5886 -0.5217 3.5557 15 8 2.8697 -1.6983 3.4696 16 7 2.7287 0.1203 4.7324 17 6 2.3886 1.5415 4.8365 18 6 3.2201 -0.6032 5.9076 19 6 4.7459 -0.5062 5.9651 20 6 5.2592 -1.2623 7.1921 21 8 6.6843 -1.1713 7.2461 22 6 7.3037 -1.7946 8.2833 23 6 6.5543 -2.4745 9.2321 24 6 7.1854 -3.1112 10.2832 25 6 8.5645 -3.0623 10.3955 26 9 9.1801 -3.6806 11.4270 27 6 9.3134 -2.3800 9.4518 28 6 8.6853 -1.7465 8.3970 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8899 32 1 1.9111 -0.5221 -4.4375 33 1 2.9174 -1.1205 1.0286 34 1 2.7589 1.0461 2.1182 35 1 1.0871 0.6161 2.5525 36 1 1.3394 1.6447 5.1132 37 1 3.0128 2.0097 5.5975 38 1 2.5606 2.0276 3.8761 39 1 2.7938 -0.1636 6.8094 40 1 2.9249 -1.6502 5.8393 41 1 5.1722 -0.9458 5.0633 42 1 5.0411 0.5409 6.0334 43 1 4.8329 -0.8231 8.0941 44 1 4.9640 -2.3093 7.1235 45 1 5.4782 -2.5093 9.1470 46 1 6.6025 -3.6435 11.0202 47 1 10.3892 -2.3429 9.5403 48 1 9.2697 -1.2139 7.6613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602865466.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:49 Heat of formation + Delta-G solvation = -81.366108 kcal Electronic energy + Delta-G solvation = -27844.405714 eV Core-core repulsion = 23621.766329 eV Total energy + Delta-G solvation = -4222.639384 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.19547 -40.55316 -39.83017 -37.78898 -36.28723 -35.59671 -33.21938 -32.38112 -31.67451 -30.13969 -29.63320 -27.47005 -26.68634 -25.35013 -24.54320 -23.51516 -22.59562 -21.75659 -19.96587 -19.28662 -18.66910 -17.76618 -17.28532 -17.06735 -16.73845 -16.47620 -16.02405 -15.92655 -15.85771 -15.20440 -14.96390 -14.62648 -14.19481 -14.10048 -13.95080 -13.72418 -13.44649 -13.42029 -13.04750 -13.00592 -12.75674 -12.74517 -12.57213 -12.32339 -12.17922 -11.94496 -11.89311 -11.49912 -11.28000 -11.21872 -10.94692 -10.91636 -10.67826 -10.14117 -9.66529 -9.64121 -9.48506 -9.05484 -8.81162 -8.62925 -8.53367 -7.56042 -6.10867 -4.11266 0.68427 0.77226 2.53175 2.81008 3.02862 3.11683 3.24653 3.32112 3.36044 3.88281 4.19700 4.30093 4.35901 4.41389 4.56424 4.62781 4.66526 4.77899 4.83061 4.91007 4.95693 5.01570 5.11834 5.16274 5.22559 5.25686 5.30755 5.40379 5.47267 5.65163 5.66387 5.69027 5.70223 5.71982 5.75646 5.87004 6.25009 6.31461 6.37499 6.48128 6.63864 6.73348 6.93047 7.25828 7.34187 7.53407 7.86072 8.25618 8.35760 8.58491 8.94943 9.50099 11.02082 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024093 B = 0.001593 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.861873 B =17572.471660 C =18152.722438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.183 3.817 3 H 0.002 0.998 4 C -0.520 4.520 5 H 0.080 0.920 6 C 0.071 3.929 7 N -0.896 5.896 8 Si 0.892 3.108 9 H -0.278 1.278 10 H -0.269 1.269 11 H -0.297 1.297 12 N -0.663 5.663 13 C 0.042 3.958 14 C 0.514 3.486 15 O -0.517 6.517 16 N -0.626 5.626 17 C 0.078 3.922 18 C 0.122 3.878 19 C -0.136 4.136 20 C 0.062 3.938 21 O -0.309 6.309 22 C 0.126 3.874 23 C -0.182 4.182 24 C -0.112 4.112 25 C 0.055 3.945 26 F -0.142 7.142 27 C -0.112 4.112 28 C -0.125 4.125 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.024 0.976 32 H 0.265 0.735 33 H 0.350 0.650 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.142 0.858 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.954 3.870 29.956 31.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.074 3.926 3 H 0.019 0.981 4 C -0.559 4.559 5 H 0.098 0.902 6 C -0.131 4.131 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.194 1.194 11 H -0.225 1.225 12 N -0.296 5.296 13 C -0.091 4.091 14 C 0.303 3.697 15 O -0.390 6.390 16 N -0.362 5.362 17 C -0.065 4.065 18 C -0.002 4.002 19 C -0.175 4.175 20 C -0.013 4.013 21 O -0.223 6.223 22 C 0.080 3.920 23 C -0.201 4.201 24 C -0.131 4.131 25 C 0.035 3.965 26 F -0.121 7.121 27 C -0.131 4.131 28 C -0.143 4.143 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.169 0.831 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.157 0.843 46 H 0.156 0.844 47 H 0.160 0.840 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.575 3.060 29.716 30.818 hybrid contribution 0.025 1.255 -0.082 1.258 sum 7.600 4.316 29.634 30.896 Atomic orbital electron populations 1.22087 0.98593 1.01245 0.97643 1.19573 0.91859 0.92891 0.88233 0.98091 1.21083 1.32399 1.13938 0.88444 0.90171 1.24936 0.95713 0.96744 0.95710 1.69892 1.45358 1.40242 0.97926 0.86789 0.80717 0.83477 0.76747 1.20478 1.19441 1.22503 1.60298 1.34293 1.31062 1.03989 1.21890 1.01189 0.94979 0.90997 1.21037 0.77039 0.87662 0.83982 1.90695 1.48571 1.15842 1.83938 1.47876 1.67191 1.11076 1.10065 1.21815 1.00660 0.80734 1.03326 1.21177 0.92011 0.99038 0.87927 1.21930 0.96349 1.01380 0.97815 1.22781 0.77994 1.01254 0.99286 1.86109 1.22031 1.70127 1.43992 1.19055 0.92326 0.92959 0.87632 1.21168 1.00754 1.02127 0.96049 1.20954 0.92760 1.00213 0.99129 1.17588 0.90968 0.99741 0.88171 1.91494 1.83156 1.80942 1.56522 1.20977 1.00804 0.97641 0.93691 1.20331 0.91566 1.02797 0.99654 0.94379 0.92140 0.95669 0.92536 0.83060 0.93122 0.88894 0.92446 0.91205 0.90594 0.90495 0.89455 0.89946 0.90654 0.91741 0.91369 0.84330 0.84437 0.84019 0.84009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.89 37.16 0.33 -2.70 16 2 C 0.18 4.30 2.19 -68.86 -0.15 4.15 16 3 H 0.00 0.04 6.86 -51.93 -0.36 -0.32 16 4 C -0.52 -14.63 9.17 -34.44 -0.32 -14.94 16 5 H 0.08 2.46 7.86 -52.49 -0.41 2.05 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 7 N -0.90 -27.31 13.96 55.43 0.77 -26.53 16 8 Si 0.89 21.69 24.37 -169.99 -4.14 17.55 16 9 H -0.28 -6.61 6.88 56.52 0.39 -6.22 16 10 H -0.27 -6.19 6.52 56.52 0.37 -5.82 16 11 H -0.30 -7.23 7.11 56.52 0.40 -6.82 16 12 N -0.66 -13.97 5.93 -109.21 -0.65 -14.62 16 13 C 0.04 0.68 4.52 -4.98 -0.02 0.66 16 14 C 0.51 7.91 7.71 -10.99 -0.08 7.83 16 15 O -0.52 -9.93 15.78 5.56 0.09 -9.84 16 16 N -0.63 -6.82 2.87 -181.57 -0.52 -7.34 16 17 C 0.08 0.58 10.24 59.85 0.61 1.19 16 18 C 0.12 1.07 5.41 -4.04 -0.02 1.05 16 19 C -0.14 -1.18 5.91 -26.73 -0.16 -1.34 16 20 C 0.06 0.46 4.74 37.16 0.18 0.64 16 21 O -0.31 -2.94 10.14 -19.57 -0.20 -3.14 16 22 C 0.13 1.10 6.69 -39.23 -0.26 0.84 16 23 C -0.18 -1.34 9.04 -39.44 -0.36 -1.70 16 24 C -0.11 -0.82 10.02 -39.53 -0.40 -1.21 16 25 C 0.05 0.45 7.30 -39.42 -0.29 0.16 16 26 F -0.14 -1.30 17.27 2.25 0.04 -1.26 16 27 C -0.11 -0.83 10.02 -39.54 -0.40 -1.22 16 28 C -0.12 -0.98 9.98 -39.44 -0.39 -1.37 16 29 H 0.04 0.86 3.28 -51.93 -0.17 0.69 16 30 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.02 0.46 7.45 -51.93 -0.39 0.08 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.35 7.77 7.92 -39.29 -0.31 7.46 16 34 H 0.05 0.75 7.32 -51.93 -0.38 0.37 16 35 H 0.09 1.37 7.40 -51.93 -0.38 0.98 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 38 H 0.08 0.58 6.44 -51.93 -0.33 0.24 16 39 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 40 H 0.09 0.91 7.42 -51.93 -0.39 0.52 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 44 H 0.07 0.48 7.67 -51.93 -0.40 0.08 16 45 H 0.14 0.75 6.30 -52.49 -0.33 0.42 16 46 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 47 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 48 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 392.86 15.07 5.92 5.92 Total: -1.00 -33.94 392.86 -7.74 -41.68 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.23 Total: 3.61 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -1.82 Total: -6.03 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.40 Total: -48.49 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.11 Total: -12.98 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.14 Total: 17.55 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.94 -7.74 -41.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865466.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.686 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds