Wall clock time and date at job start Tue Mar 31 2020 20:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46899 * 109.46986 * 120.00260 * 2 1 3 13 13 C 1.46902 * 111.00131 * 274.99873 * 12 2 1 14 14 C 1.50699 * 109.47145 * 180.02562 * 13 12 2 15 15 O 1.21280 * 120.00030 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99779 * 180.02562 * 14 13 12 17 17 C 1.46502 * 120.00096 * 0.02562 * 16 14 13 18 18 C 1.46496 * 120.00083 * 179.97438 * 16 14 13 19 19 C 1.53001 * 109.47037 * 89.99958 * 18 16 14 20 20 C 1.52996 * 109.47140 * 180.02562 * 19 18 16 21 21 O 1.42901 * 109.47094 * 180.02562 * 20 19 18 22 22 C 1.35945 * 116.99986 * 180.02562 * 21 20 19 23 23 C 1.38713 * 120.03153 * 359.71950 * 22 21 20 24 24 C 1.38152 * 119.96804 * 179.78873 * 23 22 21 25 25 C 1.38452 * 120.03240 * 0.49352 * 24 23 22 26 26 F 1.35100 * 119.97294 * 179.72015 * 25 24 23 27 27 C 1.38456 * 120.05882 * 359.73991 * 25 24 23 28 28 C 1.38145 * 120.03206 * 0.02562 * 27 25 24 29 29 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 30 30 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 32 32 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 33 33 H 1.00898 * 110.99583 * 151.04841 * 12 2 1 34 34 H 1.08997 * 109.46953 * 300.00617 * 13 12 2 35 35 H 1.09002 * 109.46573 * 60.00322 * 13 12 2 36 36 H 1.08997 * 109.47255 * 89.99897 * 17 16 14 37 37 H 1.09002 * 109.47107 * 210.00124 * 17 16 14 38 38 H 1.09002 * 109.47066 * 329.99677 * 17 16 14 39 39 H 1.09001 * 109.47421 * 210.00305 * 18 16 14 40 40 H 1.09005 * 109.46932 * 330.00316 * 18 16 14 41 41 H 1.09001 * 109.47298 * 300.00421 * 19 18 16 42 42 H 1.09005 * 109.46967 * 60.00380 * 19 18 16 43 43 H 1.09001 * 109.47162 * 300.00251 * 20 19 18 44 44 H 1.08996 * 109.47663 * 60.00223 * 20 19 18 45 45 H 1.08001 * 120.01319 * 0.02562 * 23 22 21 46 46 H 1.07998 * 119.98331 * 180.21370 * 24 23 22 47 47 H 1.08002 * 119.98545 * 180.02562 * 27 25 24 48 48 H 1.08000 * 120.01578 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5886 -0.5217 3.5557 15 8 2.8697 -1.6983 3.4696 16 7 2.7287 0.1203 4.7324 17 6 2.3886 1.5415 4.8365 18 6 3.2201 -0.6032 5.9076 19 6 4.7459 -0.5062 5.9651 20 6 5.2592 -1.2623 7.1921 21 8 6.6843 -1.1713 7.2461 22 6 7.3037 -1.7946 8.2833 23 6 6.5543 -2.4745 9.2321 24 6 7.1854 -3.1112 10.2832 25 6 8.5645 -3.0623 10.3955 26 9 9.1801 -3.6806 11.4270 27 6 9.3134 -2.3800 9.4518 28 6 8.6853 -1.7465 8.3970 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8899 32 1 1.9111 -0.5221 -4.4375 33 1 2.9174 -1.1205 1.0286 34 1 2.7589 1.0461 2.1182 35 1 1.0871 0.6161 2.5525 36 1 1.3394 1.6447 5.1132 37 1 3.0128 2.0097 5.5975 38 1 2.5606 2.0276 3.8761 39 1 2.7938 -0.1636 6.8094 40 1 2.9249 -1.6502 5.8393 41 1 5.1722 -0.9458 5.0633 42 1 5.0411 0.5409 6.0334 43 1 4.8329 -0.8231 8.0941 44 1 4.9640 -2.3093 7.1235 45 1 5.4782 -2.5093 9.1470 46 1 6.6025 -3.6435 11.0202 47 1 10.3892 -2.3429 9.5403 48 1 9.2697 -1.2139 7.6613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602865466.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:48 Heat of formation + Delta-G solvation = -104.970257 kcal Electronic energy + Delta-G solvation = -27845.429266 eV Core-core repulsion = 23621.766329 eV Total energy + Delta-G solvation = -4223.662937 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.84418 -41.19704 -40.88032 -38.42339 -37.74032 -36.80601 -34.57142 -33.82058 -32.25064 -31.72160 -30.33364 -28.25624 -27.77877 -27.07665 -25.72634 -24.21361 -23.27263 -22.43641 -21.74872 -20.32377 -19.31347 -18.91837 -18.40326 -18.09887 -17.69295 -17.36215 -17.19004 -16.92898 -16.55825 -16.48499 -15.73205 -15.62037 -15.31095 -15.17820 -14.98864 -14.80594 -14.62317 -14.40649 -14.12200 -14.01039 -13.91503 -13.62969 -13.40216 -13.32393 -13.14986 -13.04455 -12.99375 -12.68987 -12.59124 -12.55408 -12.15035 -12.06304 -11.77810 -11.54919 -11.42316 -11.12964 -10.82457 -10.70769 -10.21510 -9.69636 -9.18044 -9.14691 -8.30534 -6.36988 0.13442 0.16762 1.33499 1.37525 1.49268 1.60519 1.85240 2.26396 2.32362 2.53902 3.04097 3.30428 3.45308 3.65353 3.67595 3.78553 3.89428 3.97489 4.09191 4.13847 4.27070 4.32223 4.35118 4.35626 4.37753 4.46752 4.58813 4.59402 4.62722 4.72183 4.78984 4.85733 4.88150 4.97441 4.99323 5.00474 5.09353 5.12123 5.12342 5.21820 5.47654 5.58904 5.63163 5.68394 5.93077 6.30662 6.34103 6.43166 6.63049 6.76094 7.22067 7.29450 8.86366 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024093 B = 0.001593 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.861873 B =17572.471660 C =18152.722438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.188 3.812 3 H 0.010 0.990 4 C -0.531 4.531 5 H 0.031 0.969 6 C 0.010 3.990 7 N -0.948 5.948 8 Si 0.961 3.039 9 H -0.266 1.266 10 H -0.239 1.239 11 H -0.298 1.298 12 N -0.677 5.677 13 C 0.042 3.958 14 C 0.511 3.489 15 O -0.570 6.570 16 N -0.616 5.616 17 C 0.068 3.932 18 C 0.120 3.880 19 C -0.127 4.127 20 C 0.062 3.938 21 O -0.329 6.329 22 C 0.110 3.890 23 C -0.182 4.182 24 C -0.113 4.113 25 C 0.036 3.964 26 F -0.150 7.150 27 C -0.112 4.112 28 C -0.135 4.135 29 H 0.035 0.965 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.267 0.733 33 H 0.335 0.665 34 H 0.069 0.931 35 H 0.116 0.884 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.067 0.933 41 H 0.043 0.957 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.068 0.932 45 H 0.159 0.841 46 H 0.156 0.844 47 H 0.159 0.841 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.280 6.797 32.702 33.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.079 3.921 3 H 0.028 0.972 4 C -0.569 4.569 5 H 0.049 0.951 6 C -0.188 4.188 7 N -0.588 5.588 8 Si 0.787 3.213 9 H -0.192 1.192 10 H -0.163 1.163 11 H -0.226 1.226 12 N -0.309 5.309 13 C -0.090 4.090 14 C 0.300 3.700 15 O -0.448 6.448 16 N -0.349 5.349 17 C -0.073 4.073 18 C -0.002 4.002 19 C -0.166 4.166 20 C -0.013 4.013 21 O -0.243 6.243 22 C 0.065 3.935 23 C -0.201 4.201 24 C -0.132 4.132 25 C 0.017 3.983 26 F -0.129 7.129 27 C -0.131 4.131 28 C -0.154 4.154 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.153 0.847 34 H 0.087 0.913 35 H 0.134 0.866 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.138 0.862 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.104 0.896 43 H 0.113 0.887 44 H 0.086 0.914 45 H 0.176 0.824 46 H 0.174 0.826 47 H 0.176 0.824 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.895 6.032 32.533 33.609 hybrid contribution 0.644 0.292 -0.853 1.108 sum 6.539 6.324 31.680 32.960 Atomic orbital electron populations 1.21998 0.96879 1.00940 0.99413 1.19435 0.93078 0.92476 0.87137 0.97221 1.21395 1.31691 1.12746 0.91078 0.95119 1.25922 0.97302 1.00509 0.95047 1.70064 1.47439 1.42637 0.98688 0.85681 0.78800 0.79266 0.77592 1.19190 1.16299 1.22621 1.60226 1.33642 1.32457 1.04602 1.21997 1.03037 0.94479 0.89523 1.20947 0.76922 0.87013 0.85159 1.90679 1.51221 1.17986 1.84895 1.47905 1.65425 1.12533 1.09068 1.22136 1.02457 0.78293 1.04443 1.21357 0.92113 0.98308 0.88463 1.21800 0.96142 1.01813 0.96822 1.22853 0.77332 1.01381 0.99778 1.86071 1.23065 1.70508 1.44616 1.19288 0.92787 0.93566 0.87902 1.21383 1.01741 1.01488 0.95478 1.21200 0.92599 0.99947 0.99435 1.17853 0.91649 1.00382 0.88393 1.91472 1.83358 1.81179 1.56898 1.21171 1.01740 0.97017 0.93180 1.20520 0.91705 1.03103 1.00056 0.94651 0.93651 0.91632 0.92409 0.84664 0.91307 0.86616 0.90595 0.88394 0.90621 0.86231 0.91437 0.93805 0.89587 0.88706 0.91412 0.82367 0.82635 0.82366 0.83292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.57 8.89 71.99 0.64 -4.93 16 2 C 0.19 8.65 2.19 44.17 0.10 8.75 16 3 H 0.01 0.45 6.86 -2.39 -0.02 0.44 16 4 C -0.53 -30.78 9.17 25.60 0.23 -30.54 16 5 H 0.03 2.02 7.86 -2.91 -0.02 1.99 16 6 C 0.01 0.57 5.45 84.65 0.46 1.03 16 7 N -0.95 -59.80 13.96 21.45 0.30 -59.50 16 8 Si 0.96 43.90 24.37 68.60 1.67 45.57 16 9 H -0.27 -11.60 6.88 99.48 0.68 -10.91 16 10 H -0.24 -9.74 6.52 99.48 0.65 -9.09 16 11 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 12 N -0.68 -28.58 5.93 -499.44 -2.96 -31.54 16 13 C 0.04 1.26 4.52 85.56 0.39 1.65 16 14 C 0.51 15.29 7.71 87.66 0.68 15.97 16 15 O -0.57 -22.53 15.78 -3.03 -0.05 -22.57 16 16 N -0.62 -11.90 2.87 -846.75 -2.43 -14.33 16 17 C 0.07 0.73 10.24 127.77 1.31 2.04 16 18 C 0.12 1.84 5.41 86.38 0.47 2.31 16 19 C -0.13 -2.04 5.91 30.59 0.18 -1.85 16 20 C 0.06 0.81 4.74 71.98 0.34 1.15 16 21 O -0.33 -5.98 10.14 -92.92 -0.94 -6.92 16 22 C 0.11 1.82 6.69 22.50 0.15 1.97 16 23 C -0.18 -2.40 9.04 22.36 0.20 -2.20 16 24 C -0.11 -1.50 10.02 22.30 0.22 -1.28 16 25 C 0.04 0.58 7.30 22.37 0.16 0.74 16 26 F -0.15 -2.66 17.27 44.97 0.78 -1.88 16 27 C -0.11 -1.58 10.02 22.30 0.22 -1.35 16 28 C -0.14 -2.06 9.98 22.36 0.22 -1.83 16 29 H 0.04 1.47 3.28 -2.39 -0.01 1.46 16 30 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.06 2.17 7.45 -2.39 -0.02 2.15 16 32 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 33 H 0.34 15.63 7.92 -89.70 -0.71 14.92 16 34 H 0.07 1.86 7.32 -2.39 -0.02 1.84 16 35 H 0.12 2.96 7.40 -2.39 -0.02 2.94 16 36 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.10 0.55 8.07 -2.39 -0.02 0.53 16 38 H 0.08 0.85 6.44 -2.39 -0.02 0.83 16 39 H 0.12 0.86 8.07 -2.39 -0.02 0.84 16 40 H 0.07 1.35 7.42 -2.38 -0.02 1.33 16 41 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.09 0.67 7.65 -2.39 -0.02 0.66 16 44 H 0.07 0.88 7.67 -2.39 -0.02 0.87 16 45 H 0.16 1.33 6.30 -2.91 -0.02 1.31 16 46 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 47 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 48 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -78.46 392.86 2.53 -75.93 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.18 Total: 23.65 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 5.98 Total: -8.40 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -5.09 Total: -105.37 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.99 Total: -29.49 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.78 Total: -1.88 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.67 Total: 45.57 kcal Total: -78.46 2.53 -75.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865466.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.041 kcal (2) G-P(sol) polarization free energy of solvation -78.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds