Wall clock time and date at job start Tue Mar 31 2020 21:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99972 * 2 1 4 4 C 1.53003 * 109.47014 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47009 * 65.33688 * 4 3 2 6 6 C 1.46905 * 111.00008 * 199.55302 * 5 4 3 7 7 C 1.50692 * 109.47414 * 66.04423 * 6 5 4 8 8 H 1.08007 * 119.99852 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00362 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99778 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00229 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46836 * 90.00187 * 11 9 7 13 13 H 1.48497 * 109.47129 * 210.00401 * 11 9 7 14 14 H 1.48501 * 109.47143 * 330.00440 * 11 9 7 15 15 C 1.46897 * 111.00166 * 75.59680 * 5 4 3 16 16 C 1.50706 * 109.47177 * 199.96637 * 15 5 4 17 17 O 1.21275 * 120.00115 * 355.28577 * 16 15 5 18 18 N 1.34774 * 119.99775 * 175.28704 * 16 15 5 19 19 C 1.46500 * 120.00295 * 5.16448 * 18 16 15 20 20 C 1.46501 * 119.99939 * 185.15885 * 18 16 15 21 21 C 1.50703 * 109.46998 * 96.01823 * 20 18 16 22 22 C 1.38220 * 120.01201 * 99.84856 * 21 20 18 23 23 C 1.38226 * 120.02250 * 179.72091 * 22 21 20 24 24 C 1.38262 * 120.05247 * 0.30307 * 23 22 21 25 25 C 1.38178 * 120.02872 * 359.97438 * 24 23 22 26 26 C 1.38443 * 120.01482 * 280.14652 * 21 20 18 27 27 F 1.35100 * 120.02242 * 0.02562 * 26 21 20 28 28 H 1.09008 * 109.46968 * 300.00203 * 1 2 3 29 29 H 1.08999 * 109.46763 * 60.00343 * 1 2 3 30 30 H 1.09003 * 109.47115 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47375 * 59.99948 * 3 2 1 32 32 H 1.09004 * 109.46780 * 299.99704 * 3 2 1 33 33 H 1.08997 * 109.47234 * 305.33715 * 4 3 2 34 34 H 1.08998 * 109.47230 * 185.33712 * 4 3 2 35 35 H 1.09003 * 109.47020 * 186.04836 * 6 5 4 36 36 H 1.09000 * 109.46890 * 306.04182 * 6 5 4 37 37 H 0.96998 * 120.00221 * 179.97438 * 10 9 7 38 38 H 1.09001 * 109.47572 * 79.96511 * 15 5 4 39 39 H 1.08994 * 109.47167 * 319.96543 * 15 5 4 40 40 H 1.09009 * 109.47038 * 269.99998 * 19 18 16 41 41 H 1.08998 * 109.47359 * 29.99301 * 19 18 16 42 42 H 1.08995 * 109.47327 * 150.00032 * 19 18 16 43 43 H 1.08999 * 109.47495 * 336.02201 * 20 18 16 44 44 H 1.08994 * 109.47288 * 216.01446 * 20 18 16 45 45 H 1.07994 * 119.98994 * 0.02562 * 22 21 20 46 46 H 1.07999 * 119.97072 * 180.27543 * 23 22 21 47 47 H 1.07999 * 119.98915 * 179.97438 * 24 23 22 48 48 H 1.07994 * 120.01355 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9775 0.5701 -1.2596 6 6 5.3320 0.0169 -1.1283 7 6 5.3127 -1.1335 -0.1552 8 1 4.3867 -1.4249 0.3182 9 6 6.4771 -1.8141 0.1310 10 7 7.6048 -1.4590 -0.4450 11 14 6.4532 -3.2398 1.3379 12 1 6.1874 -4.5039 0.6054 13 1 7.7680 -3.3311 2.0221 14 1 5.3852 -3.0176 2.3454 15 6 3.9066 1.5314 -2.3681 16 6 3.8819 0.7867 -3.6780 17 8 4.0057 -0.4196 -3.6922 18 7 3.7222 1.4614 -4.8338 19 6 3.6862 2.9260 -4.8281 20 6 3.5849 0.7302 -6.0958 21 6 2.1235 0.5733 -6.4289 22 6 1.5287 1.4194 -7.3459 23 6 0.1897 1.2719 -7.6558 24 6 -0.5576 0.2822 -7.0446 25 6 0.0335 -0.5611 -6.1233 26 6 1.3748 -0.4144 -5.8120 27 9 1.9536 -1.2377 -4.9107 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6887 1.8464 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.8511 0.5633 0.8374 34 1 3.9786 2.1759 0.0949 35 1 5.6764 -0.3354 -2.1006 36 1 6.0067 0.7909 -0.7625 37 1 8.4241 -1.9375 -0.2434 38 1 4.7781 2.1854 -2.3383 39 1 3.0003 2.1294 -2.2730 40 1 2.6576 3.2636 -4.7008 41 1 4.2960 3.3013 -4.0063 42 1 4.0779 3.3027 -5.7728 43 1 4.0427 -0.2540 -5.9973 44 1 4.0816 1.2840 -6.8924 45 1 2.1114 2.1927 -7.8240 46 1 -0.2731 1.9306 -8.3758 47 1 -1.6038 0.1682 -7.2872 48 1 -0.5504 -1.3343 -5.6463 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610392171.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:43 Heat of formation + Delta-G solvation = -74.087905 kcal Electronic energy + Delta-G solvation = -30786.002553 eV Core-core repulsion = 26563.678775 eV Total energy + Delta-G solvation = -4222.323778 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.53244 -39.74984 -38.79948 -37.58551 -35.95889 -35.06522 -32.44922 -32.04706 -30.58874 -29.56114 -28.30934 -27.20272 -26.14582 -25.58937 -24.31711 -22.83309 -22.18141 -21.74477 -20.25291 -18.69440 -17.46433 -16.86337 -16.47219 -16.23981 -16.08987 -16.02678 -15.68938 -15.42254 -15.03831 -14.94614 -14.63148 -14.38112 -14.23026 -13.69269 -13.50603 -13.34678 -13.08492 -12.95963 -12.68364 -12.44780 -12.33545 -12.23141 -12.08867 -11.80547 -11.73285 -11.59681 -11.39734 -11.16952 -11.07076 -10.96380 -10.61682 -10.47529 -10.05566 -9.70675 -9.33117 -9.20066 -9.07584 -8.88466 -8.65895 -8.41926 -8.23149 -7.10536 -5.83865 -3.81609 1.01663 1.10952 3.15166 3.28053 3.46173 3.51569 3.56223 3.62770 4.30097 4.32257 4.56605 4.59672 4.64734 4.81402 4.84649 5.01036 5.10733 5.19189 5.24707 5.37410 5.41622 5.46866 5.51554 5.54880 5.60649 5.64274 5.67425 5.76520 5.80510 5.82652 5.86648 5.88838 5.96870 5.97615 6.08898 6.19449 6.21232 6.23802 6.68979 6.73297 6.83293 7.36497 7.40883 7.67473 7.72596 8.00902 8.29335 8.33225 8.69303 8.86189 9.26344 9.80437 11.27823 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011759 B = 0.003656 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.612511 B = 7656.538765 C = 8254.203367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.360 6.360 3 C 0.070 3.930 4 C 0.060 3.940 5 N -0.508 5.508 6 C 0.196 3.804 7 C -0.492 4.492 8 H 0.067 0.933 9 C 0.053 3.947 10 N -0.903 5.903 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.290 1.290 14 H -0.274 1.274 15 C 0.040 3.960 16 C 0.509 3.491 17 O -0.475 6.475 18 N -0.629 5.629 19 C 0.085 3.915 20 C 0.157 3.843 21 C -0.142 4.142 22 C -0.081 4.081 23 C -0.142 4.142 24 C -0.091 4.091 25 C -0.163 4.163 26 C 0.124 3.876 27 F -0.110 7.110 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.035 0.965 33 H 0.100 0.900 34 H 0.036 0.964 35 H 0.042 0.958 36 H -0.016 1.016 37 H 0.258 0.742 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.129 0.871 46 H 0.126 0.874 47 H 0.128 0.872 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.697 12.624 -13.321 24.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C -0.007 4.007 4 C -0.068 4.068 5 N -0.233 5.233 6 C 0.072 3.928 7 C -0.531 4.531 8 H 0.085 0.915 9 C -0.147 4.147 10 N -0.544 5.544 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.216 1.216 14 H -0.199 1.199 15 C -0.092 4.092 16 C 0.296 3.704 17 O -0.344 6.344 18 N -0.367 5.367 19 C -0.059 4.059 20 C 0.034 3.966 21 C -0.144 4.144 22 C -0.100 4.100 23 C -0.160 4.160 24 C -0.110 4.110 25 C -0.182 4.182 26 C 0.104 3.896 27 F -0.088 7.088 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.119 0.881 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.002 0.998 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.117 0.883 44 H 0.101 0.899 45 H 0.146 0.854 46 H 0.144 0.856 47 H 0.146 0.854 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.571 11.279 -13.342 23.403 hybrid contribution 0.331 0.170 0.807 0.889 sum -15.240 11.450 -12.535 22.814 Atomic orbital electron populations 1.22656 0.83024 1.02132 0.98689 1.88167 1.17610 1.27100 1.94933 1.22620 0.95143 0.84850 0.98108 1.22069 0.91630 0.97789 0.95342 1.61776 1.30559 1.30072 1.00874 1.19801 0.80848 0.93758 0.98414 1.21172 0.94289 1.14168 1.23496 0.91532 1.24947 0.95503 0.97515 0.96736 1.69966 0.99036 1.41452 1.43952 0.86527 0.76843 0.83031 0.81172 1.20744 1.21612 1.19876 1.21934 1.00933 0.94647 0.91648 1.20864 0.76313 0.88540 0.84722 1.90789 1.44132 1.13691 1.85828 1.47970 1.75754 1.06466 1.06536 1.21688 1.01279 0.80122 1.02801 1.20152 0.90509 0.99854 0.86129 1.20464 0.98010 0.96777 0.99181 1.20914 0.94876 0.97734 0.96435 1.21119 0.94290 0.99333 1.01246 1.20987 0.99922 0.94574 0.95468 1.21232 0.93666 1.02277 1.00998 1.17788 0.91452 0.90539 0.89857 1.91733 1.84115 1.69386 1.63598 0.95059 0.95034 0.90165 0.94150 0.94655 0.88133 0.94635 0.93958 0.99809 0.93258 0.93019 0.90077 0.93299 0.91024 0.91479 0.88280 0.89877 0.85356 0.85648 0.85394 0.84885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.58 16 2 O -0.36 -7.04 10.65 -35.23 -0.38 -7.41 16 3 C 0.07 1.18 6.12 37.16 0.23 1.41 16 4 C 0.06 1.19 5.17 -3.82 -0.02 1.17 16 5 N -0.51 -11.65 3.97 -237.52 -0.94 -12.60 16 6 C 0.20 5.44 4.33 -4.98 -0.02 5.42 16 7 C -0.49 -14.83 8.23 -34.45 -0.28 -15.12 16 8 H 0.07 2.04 7.31 -52.48 -0.38 1.65 16 9 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 10 N -0.90 -28.31 13.29 55.43 0.74 -27.58 16 11 Si 0.90 23.21 29.54 -169.99 -5.02 18.19 16 12 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 14 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 15 C 0.04 0.74 3.87 -4.97 -0.02 0.72 16 16 C 0.51 9.92 7.29 -10.98 -0.08 9.84 16 17 O -0.48 -11.67 12.38 5.56 0.07 -11.60 16 18 N -0.63 -9.15 2.86 -182.95 -0.52 -9.67 16 19 C 0.08 0.84 10.18 59.85 0.61 1.45 16 20 C 0.16 2.08 5.42 -5.19 -0.03 2.05 16 21 C -0.14 -1.79 5.46 -104.55 -0.57 -2.36 16 22 C -0.08 -0.76 9.67 -39.59 -0.38 -1.14 16 23 C -0.14 -1.20 10.04 -39.58 -0.40 -1.59 16 24 C -0.09 -0.84 10.04 -39.59 -0.40 -1.24 16 25 C -0.16 -1.94 10.03 -39.51 -0.40 -2.34 16 26 C 0.12 1.83 7.25 -39.42 -0.29 1.55 16 27 F -0.11 -2.14 14.39 2.25 0.03 -2.10 16 28 H 0.03 0.38 8.14 -51.92 -0.42 -0.04 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.04 0.55 6.64 -51.93 -0.34 0.20 16 33 H 0.10 2.26 6.58 -51.93 -0.34 1.92 16 34 H 0.04 0.62 8.00 -51.93 -0.42 0.20 16 35 H 0.04 1.31 6.59 -51.93 -0.34 0.97 16 36 H -0.02 -0.45 8.12 -51.93 -0.42 -0.87 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.05 0.90 7.35 -51.93 -0.38 0.52 16 39 H 0.08 1.26 6.35 -51.93 -0.33 0.93 16 40 H 0.05 0.44 8.14 -51.92 -0.42 0.01 16 41 H 0.07 0.69 6.61 -51.93 -0.34 0.34 16 42 H 0.07 0.50 7.95 -51.93 -0.41 0.08 16 43 H 0.10 1.61 7.00 -51.93 -0.36 1.25 16 44 H 0.08 0.81 7.84 -51.93 -0.41 0.41 16 45 H 0.13 0.86 8.04 -52.49 -0.42 0.44 16 46 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 47 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 48 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 395.54 15.07 5.96 5.96 Total: -1.00 -37.94 395.54 -8.52 -46.46 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -7.43 Total: -2.54 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -1.03 Total: 2.89 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: -0.73 Total: -49.84 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.31 Total: -19.02 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.03 Total: -2.10 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.94 -8.52 -46.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610392171.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.627 kcal (2) G-P(sol) polarization free energy of solvation -37.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds