Wall clock time and date at job start Tue Mar 31 2020 21:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99972 * 2 1 4 4 C 1.53003 * 109.47014 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47009 * 65.33688 * 4 3 2 6 6 C 1.46905 * 111.00008 * 199.55302 * 5 4 3 7 7 C 1.50692 * 109.47414 * 66.04423 * 6 5 4 8 8 H 1.08007 * 119.99852 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00362 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99778 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00229 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46836 * 90.00187 * 11 9 7 13 13 H 1.48497 * 109.47129 * 210.00401 * 11 9 7 14 14 H 1.48501 * 109.47143 * 330.00440 * 11 9 7 15 15 C 1.46897 * 111.00166 * 75.59680 * 5 4 3 16 16 C 1.50706 * 109.47177 * 199.96637 * 15 5 4 17 17 O 1.21275 * 120.00115 * 355.28577 * 16 15 5 18 18 N 1.34774 * 119.99775 * 175.28704 * 16 15 5 19 19 C 1.46500 * 120.00295 * 5.16448 * 18 16 15 20 20 C 1.46501 * 119.99939 * 185.15885 * 18 16 15 21 21 C 1.50703 * 109.46998 * 96.01823 * 20 18 16 22 22 C 1.38220 * 120.01201 * 99.84856 * 21 20 18 23 23 C 1.38226 * 120.02250 * 179.72091 * 22 21 20 24 24 C 1.38262 * 120.05247 * 0.30307 * 23 22 21 25 25 C 1.38178 * 120.02872 * 359.97438 * 24 23 22 26 26 C 1.38443 * 120.01482 * 280.14652 * 21 20 18 27 27 F 1.35100 * 120.02242 * 0.02562 * 26 21 20 28 28 H 1.09008 * 109.46968 * 300.00203 * 1 2 3 29 29 H 1.08999 * 109.46763 * 60.00343 * 1 2 3 30 30 H 1.09003 * 109.47115 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47375 * 59.99948 * 3 2 1 32 32 H 1.09004 * 109.46780 * 299.99704 * 3 2 1 33 33 H 1.08997 * 109.47234 * 305.33715 * 4 3 2 34 34 H 1.08998 * 109.47230 * 185.33712 * 4 3 2 35 35 H 1.09003 * 109.47020 * 186.04836 * 6 5 4 36 36 H 1.09000 * 109.46890 * 306.04182 * 6 5 4 37 37 H 0.96998 * 120.00221 * 179.97438 * 10 9 7 38 38 H 1.09001 * 109.47572 * 79.96511 * 15 5 4 39 39 H 1.08994 * 109.47167 * 319.96543 * 15 5 4 40 40 H 1.09009 * 109.47038 * 269.99998 * 19 18 16 41 41 H 1.08998 * 109.47359 * 29.99301 * 19 18 16 42 42 H 1.08995 * 109.47327 * 150.00032 * 19 18 16 43 43 H 1.08999 * 109.47495 * 336.02201 * 20 18 16 44 44 H 1.08994 * 109.47288 * 216.01446 * 20 18 16 45 45 H 1.07994 * 119.98994 * 0.02562 * 22 21 20 46 46 H 1.07999 * 119.97072 * 180.27543 * 23 22 21 47 47 H 1.07999 * 119.98915 * 179.97438 * 24 23 22 48 48 H 1.07994 * 120.01355 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9775 0.5701 -1.2596 6 6 5.3320 0.0169 -1.1283 7 6 5.3127 -1.1335 -0.1552 8 1 4.3867 -1.4249 0.3182 9 6 6.4771 -1.8141 0.1310 10 7 7.6048 -1.4590 -0.4450 11 14 6.4532 -3.2398 1.3379 12 1 6.1874 -4.5039 0.6054 13 1 7.7680 -3.3311 2.0221 14 1 5.3852 -3.0176 2.3454 15 6 3.9066 1.5314 -2.3681 16 6 3.8819 0.7867 -3.6780 17 8 4.0057 -0.4196 -3.6922 18 7 3.7222 1.4614 -4.8338 19 6 3.6862 2.9260 -4.8281 20 6 3.5849 0.7302 -6.0958 21 6 2.1235 0.5733 -6.4289 22 6 1.5287 1.4194 -7.3459 23 6 0.1897 1.2719 -7.6558 24 6 -0.5576 0.2822 -7.0446 25 6 0.0335 -0.5611 -6.1233 26 6 1.3748 -0.4144 -5.8120 27 9 1.9536 -1.2377 -4.9107 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6887 1.8464 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.8511 0.5633 0.8374 34 1 3.9786 2.1759 0.0949 35 1 5.6764 -0.3354 -2.1006 36 1 6.0067 0.7909 -0.7625 37 1 8.4241 -1.9375 -0.2434 38 1 4.7781 2.1854 -2.3383 39 1 3.0003 2.1294 -2.2730 40 1 2.6576 3.2636 -4.7008 41 1 4.2960 3.3013 -4.0063 42 1 4.0779 3.3027 -5.7728 43 1 4.0427 -0.2540 -5.9973 44 1 4.0816 1.2840 -6.8924 45 1 2.1114 2.1927 -7.8240 46 1 -0.2731 1.9306 -8.3758 47 1 -1.6038 0.1682 -7.2872 48 1 -0.5504 -1.3343 -5.6463 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610392171.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:42 Heat of formation + Delta-G solvation = -101.534513 kcal Electronic energy + Delta-G solvation = -30787.192727 eV Core-core repulsion = 26563.678775 eV Total energy + Delta-G solvation = -4223.513952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.73654 -41.01812 -39.81709 -38.97655 -37.50366 -36.44070 -34.67793 -33.04045 -31.40816 -31.02747 -30.06115 -28.25362 -27.55034 -26.88312 -25.79886 -24.08111 -23.66398 -22.75234 -21.78789 -20.05973 -18.56937 -18.40711 -18.17510 -17.50938 -17.22480 -17.19946 -17.04541 -16.75704 -16.43882 -16.22474 -16.05760 -15.96230 -15.23083 -15.13329 -15.00395 -14.63306 -14.33080 -14.12367 -13.99927 -13.71278 -13.68381 -13.39441 -13.29603 -13.17912 -13.03260 -12.88805 -12.80959 -12.62771 -12.50203 -12.38923 -12.34612 -11.97564 -11.93717 -11.59961 -11.25298 -10.68564 -10.56006 -10.44766 -9.92526 -9.67955 -9.51407 -8.88059 -8.17197 -6.23817 0.18122 0.28591 1.35565 1.40188 1.50415 1.82413 2.08288 2.41711 2.75208 3.04427 3.15065 3.32179 3.45496 3.68693 3.72437 3.87769 4.09319 4.12705 4.25322 4.28589 4.30786 4.37354 4.41811 4.42761 4.52683 4.53668 4.55962 4.58154 4.66164 4.69957 4.78447 4.84716 4.94474 4.98995 5.04125 5.17488 5.19136 5.28486 5.34810 5.40834 5.47796 5.65333 5.69050 6.01033 6.09873 6.34099 6.42496 6.50419 6.72644 6.91034 7.43077 7.45401 8.94400 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011759 B = 0.003656 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.612511 B = 7656.538765 C = 8254.203367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.410 6.410 3 C 0.076 3.924 4 C 0.058 3.942 5 N -0.529 5.529 6 C 0.221 3.779 7 C -0.510 4.510 8 H 0.054 0.946 9 C -0.001 4.001 10 N -0.936 5.936 11 Si 0.965 3.035 12 H -0.282 1.282 13 H -0.274 1.274 14 H -0.264 1.264 15 C 0.043 3.957 16 C 0.499 3.501 17 O -0.543 6.543 18 N -0.621 5.621 19 C 0.075 3.925 20 C 0.155 3.845 21 C -0.152 4.152 22 C -0.071 4.071 23 C -0.127 4.127 24 C -0.085 4.085 25 C -0.176 4.176 26 C 0.071 3.929 27 F -0.153 7.153 28 H 0.058 0.942 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.000 1.000 36 H -0.035 1.035 37 H 0.262 0.738 38 H 0.065 0.935 39 H 0.117 0.883 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.052 0.948 44 H 0.125 0.875 45 H 0.166 0.834 46 H 0.167 0.833 47 H 0.160 0.840 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.194 15.822 -14.749 28.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.329 6.329 3 C 0.000 4.000 4 C -0.070 4.070 5 N -0.253 5.253 6 C 0.095 3.905 7 C -0.549 4.549 8 H 0.072 0.928 9 C -0.198 4.198 10 N -0.578 5.578 11 Si 0.790 3.210 12 H -0.208 1.208 13 H -0.199 1.199 14 H -0.188 1.188 15 C -0.089 4.089 16 C 0.287 3.713 17 O -0.418 6.418 18 N -0.356 5.356 19 C -0.066 4.066 20 C 0.033 3.967 21 C -0.154 4.154 22 C -0.089 4.089 23 C -0.145 4.145 24 C -0.103 4.103 25 C -0.194 4.194 26 C 0.051 3.949 27 F -0.132 7.132 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.018 0.982 36 H -0.018 1.018 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.135 0.865 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.120 0.880 43 H 0.071 0.929 44 H 0.143 0.857 45 H 0.183 0.817 46 H 0.184 0.816 47 H 0.178 0.822 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.105 14.554 -14.798 27.543 hybrid contribution 0.996 -0.713 1.099 1.646 sum -17.109 13.842 -13.699 25.922 Atomic orbital electron populations 1.22823 0.80575 1.02867 1.00471 1.88100 1.20505 1.28920 1.95357 1.22623 0.92469 0.84417 1.00513 1.22125 0.94333 0.97956 0.92587 1.61559 1.27316 1.32937 1.03510 1.19265 0.83292 0.92794 0.95186 1.21421 0.93991 1.15336 1.24130 0.92802 1.25853 0.95019 1.00281 0.98603 1.70086 0.99675 1.42764 1.45229 0.85453 0.77696 0.78994 0.78873 1.20783 1.19949 1.18820 1.22017 1.03038 0.93924 0.89873 1.21147 0.75807 0.87936 0.86408 1.90764 1.47569 1.16512 1.86931 1.47984 1.73663 1.08490 1.05492 1.22047 1.02853 0.76726 1.04984 1.20241 0.91733 0.98254 0.86517 1.20466 0.97177 0.97358 1.00390 1.21309 0.95677 0.97199 0.94744 1.21636 0.93721 0.98646 1.00505 1.21408 1.01491 0.93571 0.93850 1.21394 0.92657 1.03268 1.02125 1.18418 0.93155 0.92059 0.91247 1.91626 1.84995 1.70993 1.65536 0.92372 0.93914 0.90176 0.90677 0.92882 0.91690 0.91964 0.98215 1.01781 0.92906 0.91725 0.86501 0.91406 0.90763 0.87990 0.92897 0.85711 0.81681 0.81565 0.82218 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.41 -16.08 10.65 -148.98 -1.59 -17.67 16 3 C 0.08 2.47 6.12 71.98 0.44 2.91 16 4 C 0.06 2.31 5.17 86.30 0.45 2.76 16 5 N -0.53 -25.32 3.97 -905.37 -3.60 -28.91 16 6 C 0.22 13.05 4.33 85.55 0.37 13.42 16 7 C -0.51 -32.48 8.23 25.60 0.21 -32.27 16 8 H 0.05 3.49 7.31 -2.91 -0.02 3.47 16 9 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 10 N -0.94 -61.04 13.29 21.45 0.28 -60.75 16 11 Si 0.97 49.22 29.54 68.60 2.03 51.24 16 12 H -0.28 -14.33 7.11 99.48 0.71 -13.62 16 13 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 14 H -0.26 -12.92 7.11 99.48 0.71 -12.22 16 15 C 0.04 1.60 3.87 85.56 0.33 1.93 16 16 C 0.50 20.44 7.29 87.66 0.64 21.08 16 17 O -0.54 -29.19 12.38 -3.02 -0.04 -29.23 16 18 N -0.62 -17.90 2.86 -851.13 -2.43 -20.34 16 19 C 0.08 1.26 10.18 127.77 1.30 2.56 16 20 C 0.16 4.16 5.42 85.63 0.46 4.62 16 21 C -0.15 -3.72 5.46 -19.82 -0.11 -3.83 16 22 C -0.07 -1.05 9.67 22.26 0.22 -0.83 16 23 C -0.13 -1.53 10.04 22.27 0.22 -1.31 16 24 C -0.09 -1.30 10.04 22.26 0.22 -1.08 16 25 C -0.18 -4.21 10.03 22.31 0.22 -3.98 16 26 C 0.07 2.21 7.25 22.38 0.16 2.37 16 27 F -0.15 -6.62 14.39 44.97 0.65 -5.97 16 28 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.05 1.51 6.64 -2.39 -0.02 1.49 16 33 H 0.06 3.05 6.58 -2.39 -0.02 3.03 16 34 H 0.06 2.11 8.00 -2.39 -0.02 2.09 16 35 H 0.00 -0.02 6.59 -2.39 -0.02 -0.03 16 36 H -0.04 -2.15 8.12 -2.39 -0.02 -2.17 16 37 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 38 H 0.07 2.25 7.35 -2.39 -0.02 2.23 16 39 H 0.12 3.44 6.35 -2.39 -0.02 3.42 16 40 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.07 1.22 6.61 -2.39 -0.02 1.21 16 42 H 0.10 1.03 7.95 -2.39 -0.02 1.01 16 43 H 0.05 1.91 7.00 -2.39 -0.02 1.90 16 44 H 0.12 2.17 7.84 -2.39 -0.02 2.15 16 45 H 0.17 1.20 8.04 -2.91 -0.02 1.18 16 46 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 47 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 48 H 0.13 3.00 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -93.75 395.54 3.11 -90.64 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.95 Total: 10.16 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 6.85 Total: 10.83 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -5.74 Total: -110.01 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -1.62 Total: -46.90 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 0.65 Total: -5.97 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 2.03 Total: 51.24 kcal Total: -93.75 3.11 -90.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610392171.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.891 kcal (2) G-P(sol) polarization free energy of solvation -93.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds