Wall clock time and date at job start Tue Mar 31 2020 21:55:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86800 * 120.00060 * 2 1
4 4 H 1.48500 * 109.47149 * 272.90817 * 3 2 1
5 5 H 1.48502 * 109.46858 * 32.90553 * 3 2 1
6 6 H 1.48494 * 109.47186 * 152.90582 * 3 2 1
7 7 C 1.38818 * 119.99922 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00267 * 339.41184 * 7 2 1
9 9 N 1.36937 * 119.99512 * 159.41180 * 7 2 1
10 10 C 1.46926 * 120.62571 * 152.73441 * 9 7 2
11 11 C 1.53198 * 108.89429 * 126.46041 * 10 9 7
12 12 C 1.53042 * 109.31086 * 54.55921 * 11 10 9
13 13 N 1.46894 * 109.45703 * 178.61488 * 12 11 10
14 14 C 1.46907 * 111.00105 * 205.00223 * 13 12 11
15 15 H 1.09003 * 109.46695 * 35.00307 * 14 13 12
16 16 C 1.50694 * 109.47300 * 155.00123 * 14 13 12
17 17 C 1.38241 * 120.00020 * 39.72888 * 16 14 13
18 18 C 1.38236 * 119.99852 * 179.78853 * 17 16 14
19 19 C 1.38235 * 120.00054 * 0.46247 * 18 17 16
20 20 C 1.38236 * 120.00086 * 359.76569 * 19 18 17
21 21 C 1.38233 * 120.00122 * 220.00225 * 16 14 13
22 22 C 1.50700 * 109.46857 * 275.00399 * 14 13 12
23 23 C 1.38602 * 120.80136 * 319.71814 * 22 14 13
24 24 N 1.32334 * 119.10207 * 179.72502 * 23 22 14
25 25 C 1.31793 * 120.82085 * 0.55967 * 24 23 22
26 26 N 1.31795 * 121.75233 * 359.71137 * 25 24 23
27 27 C 1.32336 * 120.81988 * 0.02562 * 26 25 24
28 28 C 1.53034 * 109.53807 * 298.63769 * 12 11 10
29 29 C 1.46952 * 120.65918 * 332.54798 * 9 7 2
30 30 H 0.96996 * 120.00085 * 359.97438 * 1 2 3
31 31 H 1.09004 * 109.59064 * 6.59800 * 10 9 7
32 32 H 1.09000 * 109.58699 * 246.31802 * 10 9 7
33 33 H 1.08993 * 109.49687 * 174.51178 * 11 10 9
34 34 H 1.08993 * 109.49500 * 294.60918 * 11 10 9
35 35 H 1.09001 * 109.45662 * 58.64301 * 12 11 10
36 36 H 1.00897 * 111.00210 * 81.04920 * 13 12 11
37 37 H 1.07995 * 119.99959 * 359.97438 * 17 16 14
38 38 H 1.08001 * 120.00040 * 180.25159 * 18 17 16
39 39 H 1.08000 * 119.99884 * 179.79006 * 19 18 17
40 40 H 1.07997 * 120.00133 * 180.02562 * 20 19 18
41 41 H 1.08001 * 119.99749 * 359.97438 * 21 16 14
42 42 H 1.07998 * 120.44494 * 0.02562 * 23 22 14
43 43 H 1.07994 * 119.12662 * 179.73293 * 25 24 23
44 44 H 1.08000 * 120.44565 * 180.02562 * 27 26 25
45 45 H 1.09004 * 109.49724 * 181.31230 * 28 12 11
46 46 H 1.08996 * 109.49993 * 301.40992 * 28 12 11
47 47 H 1.08999 * 109.46884 * 113.75329 * 29 9 7
48 48 H 1.09007 * 109.71303 * 353.47008 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4362 2.0819 -1.3983
5 1 1.4797 2.6341 0.7606
6 1 3.5771 1.4232 0.6376
7 6 2.0103 -1.2022 0.0005
8 1 1.5220 -2.1075 0.3298
9 7 3.3140 -1.2402 -0.4165
10 6 4.2342 -2.2646 0.0958
11 6 4.8778 -2.9908 -1.0897
12 6 5.5331 -1.9645 -2.0167
13 7 6.1798 -2.6599 -3.1373
14 6 7.2736 -1.8541 -3.6963
15 1 7.7657 -1.3035 -2.8945
16 6 8.2718 -2.7602 -4.3696
17 6 7.8337 -3.8419 -5.1106
18 6 8.7493 -4.6705 -5.7318
19 6 10.1033 -4.4231 -5.6042
20 6 10.5416 -3.3442 -4.8594
21 6 9.6259 -2.5131 -4.2417
22 6 6.7169 -0.8825 -4.7049
23 6 5.7184 -1.2678 -5.5855
24 7 5.2502 -0.3856 -6.4536
25 6 5.7292 0.8415 -6.4943
26 7 6.6822 1.2415 -5.6765
27 6 7.1955 0.4162 -4.7784
28 6 4.4671 -1.0085 -2.5568
29 6 3.8189 -0.2599 -1.3879
30 1 -0.4850 0.8400 0.0004
31 1 3.6822 -2.9794 0.7062
32 1 5.0091 -1.7912 0.6987
33 1 5.6338 -3.6855 -0.7238
34 1 4.1130 -3.5405 -1.6383
35 1 6.2804 -1.3981 -1.4608
36 1 5.5074 -2.9007 -3.8500
37 1 6.7760 -4.0378 -5.2065
38 1 8.4068 -5.5133 -6.3140
39 1 10.8187 -5.0725 -6.0868
40 1 11.5994 -3.1507 -4.7600
41 1 9.9683 -1.6703 -3.6595
42 1 5.3244 -2.2730 -5.5601
43 1 5.3301 1.5379 -7.2168
44 1 7.9760 0.7505 -4.1109
45 1 4.9308 -0.2922 -3.2351
46 1 3.7061 -1.5768 -3.0916
47 1 4.5598 0.3792 -0.9075
48 1 2.9944 0.3502 -1.7570
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000612571082.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:55:30
Heat of formation + Delta-G solvation = 108.418323 kcal
Electronic energy + Delta-G solvation = -29709.577494 eV
Core-core repulsion = 25958.229756 eV
Total energy + Delta-G solvation = -3751.347738 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.180 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-41.47807 -39.57371 -38.38675 -36.15588 -33.88998 -33.33769 -31.61010 -31.19558
-31.07432 -30.36431 -29.33245 -26.30082 -25.02871 -24.25544 -23.35660 -22.81823
-22.60479 -21.57337 -20.92176 -19.58641 -17.96175 -17.69386 -17.17616 -16.87794
-15.93065 -15.69766 -15.47730 -15.15435 -14.85093 -14.38247 -14.18464 -14.01989
-13.83887 -13.81553 -13.64644 -13.53663 -13.28542 -13.01809 -12.82374 -12.45569
-12.24420 -12.08529 -11.79783 -11.41206 -11.33033 -11.17071 -11.01846 -10.92620
-10.80322 -10.58401 -10.23069 -10.12415 -9.99681 -9.52621 -9.46292 -9.40850
-9.11031 -8.91375 -8.69418 -8.44005 -7.00469 -5.97146 -3.32702 0.63744
0.88440 1.17257 1.22017 3.29213 3.45632 3.47858 3.51656 3.60303
3.86956 3.96532 4.08394 4.33866 4.47467 4.50517 4.56507 4.67778
4.77217 4.82546 4.92085 4.92446 5.07725 5.20860 5.22845 5.29443
5.33289 5.38951 5.43132 5.54870 5.62862 5.74660 5.79605 5.83516
6.01656 6.10649 6.12705 6.15518 6.23095 6.25431 6.31443 6.40028
6.41565 6.57659 6.62427 6.62885 6.74283 6.78453 6.84991 7.03306
7.23843 7.87805 7.94256 8.31076 8.92035 9.70092 10.07789 11.18936
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.013646 B = 0.003626 C = 0.003148
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2051.372669 B = 7720.111132 C = 8893.151158
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.908 5.908
2 C 0.023 3.977
3 Si 0.882 3.118
4 H -0.291 1.291
5 H -0.302 1.302
6 H -0.271 1.271
7 C -0.259 4.259
8 H 0.086 0.914
9 N -0.605 5.605
10 C 0.148 3.852
11 C -0.119 4.119
12 C 0.095 3.905
13 N -0.669 5.669
14 C 0.175 3.825
15 H 0.100 0.900
16 C -0.063 4.063
17 C -0.095 4.095
18 C -0.120 4.120
19 C -0.124 4.124
20 C -0.121 4.121
21 C -0.113 4.113
22 C -0.206 4.206
23 C 0.157 3.843
24 N -0.511 5.511
25 C 0.288 3.712
26 N -0.516 5.516
27 C 0.155 3.845
28 C -0.160 4.160
29 C 0.132 3.868
30 H 0.262 0.738
31 H 0.065 0.935
32 H 0.021 0.979
33 H 0.063 0.937
34 H 0.062 0.938
35 H 0.073 0.927
36 H 0.340 0.660
37 H 0.120 0.880
38 H 0.121 0.879
39 H 0.119 0.881
40 H 0.120 0.880
41 H 0.121 0.879
42 H 0.162 0.838
43 H 0.195 0.805
44 H 0.165 0.835
45 H 0.044 0.956
46 H 0.065 0.935
47 H 0.022 0.978
48 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.941 -5.866 -12.460 25.063
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.551 5.551
2 C -0.175 4.175
3 Si 0.712 3.288
4 H -0.219 1.219
5 H -0.231 1.231
6 H -0.196 1.196
7 C -0.388 4.388
8 H 0.104 0.896
9 N -0.329 5.329
10 C 0.022 3.978
11 C -0.158 4.158
12 C -0.014 4.014
13 N -0.298 5.298
14 C 0.063 3.937
15 H 0.118 0.882
16 C -0.063 4.063
17 C -0.113 4.113
18 C -0.139 4.139
19 C -0.142 4.142
20 C -0.139 4.139
21 C -0.131 4.131
22 C -0.211 4.211
23 C -0.010 4.010
24 N -0.224 5.224
25 C 0.000 4.000
26 N -0.229 5.229
27 C -0.012 4.012
28 C -0.201 4.201
29 C 0.006 3.994
30 H 0.072 0.928
31 H 0.084 0.916
32 H 0.039 0.961
33 H 0.081 0.919
34 H 0.081 0.919
35 H 0.092 0.908
36 H 0.160 0.840
37 H 0.138 0.862
38 H 0.139 0.861
39 H 0.137 0.863
40 H 0.138 0.862
41 H 0.139 0.861
42 H 0.179 0.821
43 H 0.212 0.788
44 H 0.183 0.817
45 H 0.062 0.938
46 H 0.084 0.916
47 H 0.040 0.960
48 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 20.787 -5.519 -12.678 24.966
hybrid contribution 0.167 1.192 0.042 1.205
sum 20.954 -4.327 -12.636 24.849
Atomic orbital electron populations
1.69833 1.05698 1.26532 1.53009 1.25275 0.95210 0.97511 0.99545
0.86967 0.80070 0.84859 0.76855 1.21919 1.23068 1.19606 1.18932
0.84992 0.94753 1.40080 0.89615 1.44358 1.08729 1.33377 1.46407
1.20945 0.92315 0.91304 0.93266 1.21983 0.99178 0.97303 0.97377
1.21625 0.94641 0.93987 0.91128 1.60929 1.13733 1.42919 1.12246
1.19361 0.91799 0.89647 0.92848 0.88199 1.19602 0.93277 0.95950
0.97519 1.20913 0.99713 0.94360 0.96362 1.21148 0.93290 0.99589
0.99827 1.21140 0.95822 0.97846 0.99368 1.21081 0.99401 0.95435
0.97952 1.20980 0.92354 0.99769 1.00036 1.22384 0.99848 0.98092
1.00811 1.22932 0.90641 0.98985 0.88435 1.68433 1.27606 1.03836
1.22508 1.24994 0.89152 0.91196 0.94663 1.68423 1.11426 1.37550
1.05454 1.23090 0.95742 0.88797 0.93532 1.22760 0.98698 0.99133
0.99462 1.21219 0.97042 0.92003 0.89161 0.92767 0.91646 0.96070
0.91851 0.91943 0.90842 0.84005 0.86182 0.86131 0.86333 0.86180
0.86149 0.82121 0.78799 0.81741 0.93762 0.91623 0.96011 0.91170
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -28.01 13.97 55.49 0.78 -27.23 16
2 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16
3 Si 0.88 22.69 24.35 -169.99 -4.14 18.56 16
4 H -0.29 -7.35 6.62 56.52 0.37 -6.97 16
5 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16
6 H -0.27 -6.82 6.63 56.52 0.37 -6.45 16
7 C -0.26 -7.23 10.04 -15.06 -0.15 -7.38 16
8 H 0.09 2.54 8.05 -52.49 -0.42 2.12 16
9 N -0.60 -14.15 2.78 -172.29 -0.48 -14.63 16
10 C 0.15 2.82 6.51 -3.71 -0.02 2.79 16
11 C -0.12 -1.84 5.69 -26.61 -0.15 -1.99 16
12 C 0.10 1.35 2.43 -67.68 -0.16 1.19 16
13 N -0.67 -7.61 5.49 -102.14 -0.56 -8.18 16
14 C 0.18 1.76 2.46 -70.02 -0.17 1.58 16
15 H 0.10 0.96 7.19 -51.93 -0.37 0.59 16
16 C -0.06 -0.61 4.94 -104.63 -0.52 -1.12 16
17 C -0.10 -0.91 9.17 -39.58 -0.36 -1.27 16
18 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16
19 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16
20 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16
21 C -0.11 -1.00 9.67 -39.58 -0.38 -1.39 16
22 C -0.21 -2.22 2.91 -104.36 -0.30 -2.52 16
23 C 0.16 1.82 9.56 -17.20 -0.16 1.65 16
24 N -0.51 -6.58 10.44 -14.58 -0.15 -6.73 16
25 C 0.29 3.46 12.29 -92.15 -1.13 2.33 16
26 N -0.52 -6.45 10.44 -14.58 -0.15 -6.60 16
27 C 0.15 1.72 10.96 -17.20 -0.19 1.53 16
28 C -0.16 -2.72 4.84 -26.61 -0.13 -2.85 16
29 C 0.13 2.86 4.20 -3.70 -0.02 2.85 16
30 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16
31 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16
32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16
33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
35 H 0.07 1.05 7.43 -51.93 -0.39 0.66 16
36 H 0.34 3.75 5.55 -39.29 -0.22 3.53 16
37 H 0.12 1.05 6.91 -52.49 -0.36 0.69 16
38 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16
39 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16
40 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16
41 H 0.12 0.87 8.04 -52.49 -0.42 0.45 16
42 H 0.16 1.60 6.30 -52.49 -0.33 1.27 16
43 H 0.20 1.76 8.06 -52.49 -0.42 1.34 16
44 H 0.17 1.40 8.06 -52.49 -0.42 0.97 16
45 H 0.04 0.71 5.84 -51.93 -0.30 0.41 16
46 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16
47 H 0.02 0.47 7.07 -51.93 -0.37 0.11 16
48 H 0.07 1.72 4.51 -51.92 -0.23 1.48 16
LS Contribution 374.84 15.07 5.65 5.65
Total: -1.00 -32.63 374.84 -11.03 -43.66
By element:
Atomic # 1 Polarization: 10.60 SS G_CDS: -6.83 Total: 3.78 kcal
Atomic # 6 Polarization: -3.13 SS G_CDS: -5.14 Total: -8.27 kcal
Atomic # 7 Polarization: -62.80 SS G_CDS: -0.57 Total: -63.37 kcal
Atomic # 14 Polarization: 22.69 SS G_CDS: -4.14 Total: 18.56 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -32.63 -11.03 -43.66 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000612571082.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 152.076 kcal
(2) G-P(sol) polarization free energy of solvation -32.630 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.446 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.028 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.658 kcal
(6) G-S(sol) free energy of system = (1) + (5) 108.418 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds