Wall clock time and date at job start Tue Mar 31 2020 20:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47242 * 2 1 4 4 N 1.46501 * 109.47229 * 239.99672 * 2 1 3 5 5 C 1.34777 * 119.99691 * 84.99836 * 4 2 1 6 6 O 1.21589 * 120.00286 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99578 * 180.02562 * 5 4 2 8 8 C 1.46499 * 119.99640 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47226 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.47194 * 299.99975 * 9 8 7 11 11 C 1.53001 * 109.47347 * 59.99571 * 9 8 7 12 12 C 1.50702 * 109.47401 * 179.97438 * 9 8 7 13 13 H 1.07989 * 119.99909 * 359.97438 * 12 9 8 14 14 C 1.37879 * 119.99896 * 179.97438 * 12 9 8 15 15 N 1.31518 * 120.00210 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 119.99880 * 180.02562 * 14 12 9 17 17 H 1.48496 * 109.47118 * 89.99843 * 16 14 12 18 18 H 1.48498 * 109.47073 * 210.00124 * 16 14 12 19 19 H 1.48498 * 109.46738 * 330.00083 * 16 14 12 20 20 C 1.52999 * 109.47312 * 119.99789 * 2 1 3 21 21 H 1.09000 * 109.47118 * 300.00607 * 20 2 1 22 22 O 1.42905 * 109.47166 * 59.99940 * 20 2 1 23 23 C 1.50691 * 109.47489 * 179.97438 * 20 2 1 24 24 C 1.38275 * 119.98701 * 99.99923 * 23 20 2 25 25 C 1.38217 * 120.05337 * 179.74861 * 24 23 20 26 26 C 1.38225 * 120.02811 * 359.95316 * 25 24 23 27 27 C 1.38443 * 119.96927 * 0.02781 * 26 25 24 28 28 F 1.35099 * 120.02154 * 179.97438 * 27 26 25 29 29 C 1.38176 * 119.98997 * 279.72858 * 23 20 2 30 30 H 1.09000 * 109.47127 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47524 * 299.99853 * 1 2 3 32 32 H 1.09000 * 109.47545 * 60.00276 * 1 2 3 33 33 H 0.97003 * 120.00252 * 265.00371 * 4 2 1 34 34 H 0.96997 * 120.00124 * 359.97438 * 7 5 4 35 35 H 1.09004 * 109.47247 * 299.99484 * 8 7 5 36 36 H 1.09000 * 109.47778 * 59.99139 * 8 7 5 37 37 H 1.09000 * 109.47098 * 59.99603 * 10 9 8 38 38 H 1.08998 * 109.47347 * 180.02562 * 10 9 8 39 39 H 1.09008 * 109.46962 * 300.00045 * 10 9 8 40 40 H 1.08999 * 109.47194 * 60.00124 * 11 9 8 41 41 H 1.08997 * 109.47377 * 180.02562 * 11 9 8 42 42 H 1.09000 * 109.47027 * 300.00447 * 11 9 8 43 43 H 0.97002 * 119.99894 * 180.02562 * 15 14 12 44 44 H 0.96701 * 113.99802 * 60.00033 * 22 20 2 45 45 H 1.07997 * 119.96974 * 359.72750 * 24 23 20 46 46 H 1.08000 * 119.99040 * 179.97438 * 25 24 23 47 47 H 1.07996 * 120.01808 * 180.02562 * 26 25 24 48 48 H 1.08002 * 120.01117 * 0.25004 * 29 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0183 -2.3571 6 8 1.8582 1.1615 -2.4117 7 7 2.5958 -0.6539 -3.4577 8 6 2.7362 0.0770 -4.7195 9 6 3.2605 -0.8692 -5.8014 10 6 4.6227 -1.4227 -5.3784 11 6 2.2761 -2.0254 -5.9885 12 6 3.4044 -0.1175 -7.0996 13 1 3.1471 0.9302 -7.1482 14 6 3.8644 -0.7674 -8.2252 15 7 4.1772 -2.0435 -8.1661 16 14 4.0434 0.1646 -9.8343 17 1 5.4056 0.7497 -9.9185 18 1 3.8334 -0.7667 -10.9717 19 1 3.0333 1.2516 -9.8915 20 6 2.0400 -0.7212 1.2492 21 1 1.6766 -0.2074 2.1392 22 8 1.5637 -2.0685 1.2493 23 6 3.5469 -0.7218 1.2490 24 6 4.2385 0.1956 2.0185 25 6 5.6207 0.1929 2.0233 26 6 6.3133 -0.7276 1.2594 27 6 5.6219 -1.6468 0.4889 28 9 6.2978 -2.5467 -0.2585 29 6 4.2371 -1.6426 0.4841 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.2490 -1.6319 -1.1526 34 1 2.8265 -1.5950 -3.4140 35 1 1.7658 0.4717 -5.0207 36 1 3.4378 0.9005 -4.5864 37 1 4.5183 -1.9665 -4.4395 38 1 4.9965 -2.0965 -6.1494 39 1 5.3241 -0.5990 -5.2451 40 1 1.3056 -1.6311 -6.2899 41 1 2.6498 -2.6998 -6.7590 42 1 2.1716 -2.5692 -5.0497 43 1 4.5011 -2.5006 -8.9580 44 1 1.8490 -2.5866 0.4843 45 1 3.6982 0.9149 2.6160 46 1 6.1598 0.9101 2.6244 47 1 7.3932 -0.7298 1.2636 48 1 3.6967 -2.3592 -0.1166 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838754354.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:25 Heat of formation + Delta-G solvation = -106.448823 kcal Electronic energy + Delta-G solvation = -30375.162859 eV Core-core repulsion = 26151.435807 eV Total energy + Delta-G solvation = -4223.727053 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.05839 -40.56746 -39.28378 -37.64190 -36.39019 -34.43512 -33.30423 -31.87146 -31.26747 -30.82577 -29.96157 -26.53364 -25.71267 -25.58047 -24.82905 -23.09693 -22.52403 -21.46169 -20.44728 -18.78780 -18.65007 -18.10408 -17.11567 -16.47533 -16.43605 -15.88332 -15.76371 -15.62186 -15.16699 -14.99027 -14.65429 -14.56018 -14.26762 -13.76465 -13.54162 -13.45676 -13.18914 -12.87583 -12.82232 -12.49057 -12.38149 -12.17370 -12.14864 -11.96353 -11.69338 -11.39601 -11.20465 -11.18807 -10.85528 -10.68388 -10.46905 -10.37416 -10.20271 -9.81001 -9.62043 -9.31391 -9.28290 -9.13062 -8.90602 -8.78188 -8.41004 -8.21646 -6.01084 -4.11008 0.82138 0.89082 2.93639 3.23285 3.29121 3.36091 3.40372 3.60475 3.86968 4.01215 4.16801 4.35566 4.39146 4.49301 4.63807 4.71825 4.83318 4.95014 5.09564 5.19716 5.25742 5.30206 5.44754 5.61384 5.70317 5.80275 5.84932 5.96217 6.07373 6.17815 6.21102 6.36941 6.50996 6.54898 6.56781 6.79473 6.83745 6.90088 7.04145 7.08776 7.09811 7.24043 7.40040 7.57144 7.70852 8.02289 8.13394 8.38152 8.44337 8.88625 9.01157 9.54726 11.00301 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.003075 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.024487 B = 9104.751550 C =10196.997444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 H 0.098 0.902 4 N -0.749 5.749 5 C 0.701 3.299 6 O -0.596 6.596 7 N -0.732 5.732 8 C 0.151 3.849 9 C 0.056 3.944 10 C -0.129 4.129 11 C -0.129 4.129 12 C -0.505 4.505 13 H 0.057 0.943 14 C 0.066 3.934 15 N -0.886 5.886 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.141 3.859 21 H 0.126 0.874 22 O -0.546 6.546 23 C -0.085 4.085 24 C -0.120 4.120 25 C -0.087 4.087 26 C -0.154 4.154 27 C 0.107 3.893 28 F -0.135 7.135 29 C -0.141 4.141 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.384 0.616 34 H 0.392 0.608 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.005 0.995 38 H 0.085 0.915 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.085 0.915 42 H 0.005 0.995 43 H 0.259 0.741 44 H 0.372 0.628 45 H 0.131 0.869 46 H 0.134 0.866 47 H 0.136 0.864 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.646 -0.682 22.361 22.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.029 3.971 3 H 0.116 0.884 4 N -0.408 5.408 5 C 0.401 3.599 6 O -0.474 6.474 7 N -0.386 5.386 8 C 0.028 3.972 9 C 0.055 3.945 10 C -0.186 4.186 11 C -0.187 4.187 12 C -0.544 4.544 13 H 0.076 0.924 14 C -0.135 4.135 15 N -0.524 5.524 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C 0.082 3.918 21 H 0.143 0.857 22 O -0.351 6.351 23 C -0.085 4.085 24 C -0.139 4.139 25 C -0.105 4.105 26 C -0.173 4.173 27 C 0.088 3.912 28 F -0.114 7.114 29 C -0.160 4.160 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.219 0.781 34 H 0.227 0.773 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.024 0.976 38 H 0.103 0.897 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.103 0.897 42 H 0.024 0.976 43 H 0.070 0.930 44 H 0.220 0.780 45 H 0.149 0.851 46 H 0.152 0.848 47 H 0.154 0.846 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.094 0.436 22.666 22.697 hybrid contribution 0.874 -0.728 -1.608 1.970 sum -0.220 -0.292 21.058 21.061 Atomic orbital electron populations 1.22113 0.94354 1.02702 1.02574 1.21402 0.94786 0.97914 0.82951 0.88377 1.45184 1.73187 1.13006 1.09393 1.16006 0.78508 0.85144 0.80213 1.90883 1.57592 1.14399 1.84577 1.45510 1.69375 1.13958 1.09753 1.21581 0.99992 0.94943 0.80668 1.18363 0.92141 0.92132 0.91832 1.21809 0.98617 1.00071 0.98137 1.21811 0.98164 0.99748 0.98932 1.20980 1.43850 0.96243 0.93309 0.92437 1.24876 0.95022 0.94871 0.98722 1.69808 1.44691 1.08866 1.29081 0.86575 0.78482 0.79708 0.83134 1.20730 1.21285 1.19894 1.21283 0.87749 0.83923 0.98885 0.85693 1.86660 1.76333 1.22732 1.49389 1.20312 0.96564 0.95512 0.96145 1.21028 0.94349 0.98903 0.99579 1.21003 0.94081 0.97565 0.97845 1.21210 1.01085 0.96394 0.98619 1.17644 0.89993 0.90038 0.93521 1.91544 1.80158 1.65412 1.74277 1.20762 0.92493 1.01243 1.01489 0.91856 0.91834 0.91537 0.78149 0.77315 0.92950 0.93023 0.97623 0.89662 0.95528 0.95467 0.89659 0.97632 0.93035 0.77998 0.85061 0.84807 0.84642 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.34 37.16 0.35 -1.27 16 2 C 0.14 1.41 2.40 -67.93 -0.16 1.25 16 3 H 0.10 1.20 7.58 -51.93 -0.39 0.80 16 4 N -0.75 -9.01 4.19 -58.68 -0.25 -9.26 16 5 C 0.70 12.02 8.53 -86.91 -0.74 11.28 16 6 O -0.60 -12.52 16.01 5.29 0.08 -12.43 16 7 N -0.73 -12.97 4.96 -65.22 -0.32 -13.29 16 8 C 0.15 3.24 4.50 -4.04 -0.02 3.22 16 9 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 10 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 11 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 12 C -0.51 -13.29 8.01 -34.44 -0.28 -13.56 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 15 N -0.89 -23.65 9.35 55.43 0.52 -23.13 16 16 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 C 0.14 1.15 3.09 -27.89 -0.09 1.06 16 21 H 0.13 0.81 8.01 -51.93 -0.42 0.39 16 22 O -0.55 -4.58 12.51 -35.23 -0.44 -5.02 16 23 C -0.08 -0.77 4.88 -104.64 -0.51 -1.28 16 24 C -0.12 -0.98 9.67 -39.58 -0.38 -1.36 16 25 C -0.09 -0.70 10.04 -39.59 -0.40 -1.10 16 26 C -0.15 -1.47 10.03 -39.51 -0.40 -1.87 16 27 C 0.11 1.20 7.30 -39.42 -0.29 0.92 16 28 F -0.14 -1.73 17.27 2.25 0.04 -1.69 16 29 C -0.14 -1.41 8.30 -39.51 -0.33 -1.74 16 30 H 0.06 0.62 7.68 -51.93 -0.40 0.22 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.38 3.68 5.48 -40.82 -0.22 3.45 16 34 H 0.39 6.27 6.18 -40.82 -0.25 6.01 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 38 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 39 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 42 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 43 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 44 H 0.37 2.39 6.12 45.56 0.28 2.67 16 45 H 0.13 0.75 8.04 -52.49 -0.42 0.32 16 46 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 47 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 48 H 0.13 1.07 5.49 -52.49 -0.29 0.78 16 LS Contribution 384.49 15.07 5.79 5.79 Total: -1.00 -31.01 384.49 -8.79 -39.80 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -6.38 Total: 10.24 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -2.81 Total: -6.80 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -0.05 Total: -45.68 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.36 Total: -17.45 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.01 -8.79 -39.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838754354.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.651 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds