Wall clock time and date at job start Tue Mar 31 2020 20:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47242 * 2 1 4 4 N 1.46501 * 109.47229 * 239.99672 * 2 1 3 5 5 C 1.34777 * 119.99691 * 84.99836 * 4 2 1 6 6 O 1.21589 * 120.00286 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99578 * 180.02562 * 5 4 2 8 8 C 1.46499 * 119.99640 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47226 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.47194 * 299.99975 * 9 8 7 11 11 C 1.53001 * 109.47347 * 59.99571 * 9 8 7 12 12 C 1.50702 * 109.47401 * 179.97438 * 9 8 7 13 13 H 1.07989 * 119.99909 * 359.97438 * 12 9 8 14 14 C 1.37879 * 119.99896 * 179.97438 * 12 9 8 15 15 N 1.31518 * 120.00210 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 119.99880 * 180.02562 * 14 12 9 17 17 H 1.48496 * 109.47118 * 89.99843 * 16 14 12 18 18 H 1.48498 * 109.47073 * 210.00124 * 16 14 12 19 19 H 1.48498 * 109.46738 * 330.00083 * 16 14 12 20 20 C 1.52999 * 109.47312 * 119.99789 * 2 1 3 21 21 H 1.09000 * 109.47118 * 300.00607 * 20 2 1 22 22 O 1.42905 * 109.47166 * 59.99940 * 20 2 1 23 23 C 1.50691 * 109.47489 * 179.97438 * 20 2 1 24 24 C 1.38275 * 119.98701 * 99.99923 * 23 20 2 25 25 C 1.38217 * 120.05337 * 179.74861 * 24 23 20 26 26 C 1.38225 * 120.02811 * 359.95316 * 25 24 23 27 27 C 1.38443 * 119.96927 * 0.02781 * 26 25 24 28 28 F 1.35099 * 120.02154 * 179.97438 * 27 26 25 29 29 C 1.38176 * 119.98997 * 279.72858 * 23 20 2 30 30 H 1.09000 * 109.47127 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47524 * 299.99853 * 1 2 3 32 32 H 1.09000 * 109.47545 * 60.00276 * 1 2 3 33 33 H 0.97003 * 120.00252 * 265.00371 * 4 2 1 34 34 H 0.96997 * 120.00124 * 359.97438 * 7 5 4 35 35 H 1.09004 * 109.47247 * 299.99484 * 8 7 5 36 36 H 1.09000 * 109.47778 * 59.99139 * 8 7 5 37 37 H 1.09000 * 109.47098 * 59.99603 * 10 9 8 38 38 H 1.08998 * 109.47347 * 180.02562 * 10 9 8 39 39 H 1.09008 * 109.46962 * 300.00045 * 10 9 8 40 40 H 1.08999 * 109.47194 * 60.00124 * 11 9 8 41 41 H 1.08997 * 109.47377 * 180.02562 * 11 9 8 42 42 H 1.09000 * 109.47027 * 300.00447 * 11 9 8 43 43 H 0.97002 * 119.99894 * 180.02562 * 15 14 12 44 44 H 0.96701 * 113.99802 * 60.00033 * 22 20 2 45 45 H 1.07997 * 119.96974 * 359.72750 * 24 23 20 46 46 H 1.08000 * 119.99040 * 179.97438 * 25 24 23 47 47 H 1.07996 * 120.01808 * 180.02562 * 26 25 24 48 48 H 1.08002 * 120.01117 * 0.25004 * 29 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0183 -2.3571 6 8 1.8582 1.1615 -2.4117 7 7 2.5958 -0.6539 -3.4577 8 6 2.7362 0.0770 -4.7195 9 6 3.2605 -0.8692 -5.8014 10 6 4.6227 -1.4227 -5.3784 11 6 2.2761 -2.0254 -5.9885 12 6 3.4044 -0.1175 -7.0996 13 1 3.1471 0.9302 -7.1482 14 6 3.8644 -0.7674 -8.2252 15 7 4.1772 -2.0435 -8.1661 16 14 4.0434 0.1646 -9.8343 17 1 5.4056 0.7497 -9.9185 18 1 3.8334 -0.7667 -10.9717 19 1 3.0333 1.2516 -9.8915 20 6 2.0400 -0.7212 1.2492 21 1 1.6766 -0.2074 2.1392 22 8 1.5637 -2.0685 1.2493 23 6 3.5469 -0.7218 1.2490 24 6 4.2385 0.1956 2.0185 25 6 5.6207 0.1929 2.0233 26 6 6.3133 -0.7276 1.2594 27 6 5.6219 -1.6468 0.4889 28 9 6.2978 -2.5467 -0.2585 29 6 4.2371 -1.6426 0.4841 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.2490 -1.6319 -1.1526 34 1 2.8265 -1.5950 -3.4140 35 1 1.7658 0.4717 -5.0207 36 1 3.4378 0.9005 -4.5864 37 1 4.5183 -1.9665 -4.4395 38 1 4.9965 -2.0965 -6.1494 39 1 5.3241 -0.5990 -5.2451 40 1 1.3056 -1.6311 -6.2899 41 1 2.6498 -2.6998 -6.7590 42 1 2.1716 -2.5692 -5.0497 43 1 4.5011 -2.5006 -8.9580 44 1 1.8490 -2.5866 0.4843 45 1 3.6982 0.9149 2.6160 46 1 6.1598 0.9101 2.6244 47 1 7.3932 -0.7298 1.2636 48 1 3.6967 -2.3592 -0.1166 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838754354.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:24 Heat of formation + Delta-G solvation = -126.248543 kcal Electronic energy + Delta-G solvation = -30376.021439 eV Core-core repulsion = 26151.435807 eV Total energy + Delta-G solvation = -4224.585633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.91978 -41.54243 -40.37762 -38.59444 -37.94281 -35.45200 -35.00241 -33.02721 -32.38411 -31.74263 -31.03233 -27.57153 -27.45939 -27.24038 -26.59770 -23.86620 -23.35648 -22.42592 -21.55809 -20.57824 -19.89090 -18.92861 -18.00985 -17.79897 -17.29378 -17.13217 -16.70347 -16.62060 -16.59551 -16.43144 -15.87909 -15.76198 -15.05020 -14.94403 -14.79594 -14.77074 -14.49728 -14.05424 -14.00549 -13.87707 -13.32193 -13.22271 -13.15687 -13.10145 -12.87531 -12.70127 -12.66089 -12.58998 -12.39275 -12.25940 -12.13908 -11.96792 -11.48913 -11.37159 -11.21741 -11.10742 -10.70947 -10.40956 -10.30695 -9.97331 -9.74635 -9.61431 -8.02228 -6.17913 0.12754 0.20539 1.42475 1.45185 1.53385 1.75013 2.22337 2.46053 2.54690 3.16760 3.21458 3.26224 3.45969 3.50569 3.70962 3.78157 4.06648 4.17126 4.30217 4.35171 4.40766 4.42956 4.53428 4.61160 4.70236 4.76288 4.83818 4.96083 5.02272 5.04703 5.05472 5.10618 5.12944 5.19479 5.31289 5.34059 5.38514 5.40561 5.55819 5.62737 5.66585 5.67189 5.89571 6.00082 6.14365 6.21661 6.43553 6.53307 6.86317 7.11820 7.49825 7.63862 8.96688 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.003075 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.024487 B = 9104.751550 C =10196.997444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.134 3.866 3 H 0.083 0.917 4 N -0.729 5.729 5 C 0.701 3.299 6 O -0.636 6.636 7 N -0.727 5.727 8 C 0.170 3.830 9 C 0.052 3.948 10 C -0.117 4.117 11 C -0.118 4.118 12 C -0.529 4.529 13 H 0.044 0.956 14 C 0.029 3.971 15 N -0.899 5.899 16 Si 0.945 3.055 17 H -0.280 1.280 18 H -0.282 1.282 19 H -0.275 1.275 20 C 0.156 3.844 21 H 0.151 0.849 22 O -0.551 6.551 23 C -0.095 4.095 24 C -0.120 4.120 25 C -0.089 4.089 26 C -0.164 4.164 27 C 0.073 3.927 28 F -0.153 7.153 29 C -0.152 4.152 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.035 0.965 33 H 0.399 0.601 34 H 0.403 0.597 35 H 0.036 0.964 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.062 0.938 39 H 0.015 0.985 40 H 0.018 0.982 41 H 0.062 0.938 42 H 0.036 0.964 43 H 0.260 0.740 44 H 0.379 0.621 45 H 0.160 0.840 46 H 0.162 0.838 47 H 0.145 0.855 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.103 -0.746 24.500 24.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.029 3.971 3 H 0.101 0.899 4 N -0.387 5.387 5 C 0.401 3.599 6 O -0.517 6.517 7 N -0.382 5.382 8 C 0.045 3.955 9 C 0.052 3.948 10 C -0.175 4.175 11 C -0.176 4.176 12 C -0.567 4.567 13 H 0.063 0.937 14 C -0.171 4.171 15 N -0.538 5.538 16 Si 0.772 3.228 17 H -0.206 1.206 18 H -0.208 1.208 19 H -0.200 1.200 20 C 0.097 3.903 21 H 0.168 0.832 22 O -0.357 6.357 23 C -0.096 4.096 24 C -0.138 4.138 25 C -0.106 4.106 26 C -0.183 4.183 27 C 0.054 3.946 28 F -0.131 7.131 29 C -0.171 4.171 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.054 0.946 33 H 0.236 0.764 34 H 0.239 0.761 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.034 0.966 40 H 0.037 0.963 41 H 0.080 0.920 42 H 0.054 0.946 43 H 0.069 0.931 44 H 0.229 0.771 45 H 0.178 0.822 46 H 0.179 0.821 47 H 0.162 0.838 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.550 0.320 24.845 24.896 hybrid contribution 1.014 -0.688 -2.190 2.509 sum -0.536 -0.368 22.655 22.665 Atomic orbital electron populations 1.22059 0.93865 1.02992 1.02282 1.21572 0.95094 0.97421 0.83028 0.89923 1.45015 1.71798 1.13603 1.08318 1.16113 0.78065 0.84714 0.81018 1.90859 1.59189 1.16337 1.85338 1.45212 1.69860 1.14191 1.08984 1.21083 0.98348 0.94227 0.81828 1.18352 0.92727 0.92448 0.91317 1.21638 0.97847 0.99311 0.98691 1.21641 0.97172 0.99058 0.99703 1.21266 1.44286 0.96056 0.95114 0.93731 1.25448 0.94905 0.95632 1.01124 1.69912 1.44741 1.09520 1.29587 0.85763 0.78230 0.78662 0.80184 1.20555 1.20796 1.20009 1.21246 0.87071 0.83781 0.98225 0.83173 1.86659 1.76355 1.22745 1.49945 1.20503 0.97071 0.95647 0.96333 1.21461 0.94632 0.98676 0.98999 1.21380 0.94420 0.97398 0.97434 1.21486 1.01868 0.96374 0.98527 1.18020 0.90792 0.90956 0.94820 1.91492 1.80560 1.66156 1.74926 1.20956 0.92253 1.01889 1.01955 0.91203 0.89406 0.94572 0.76412 0.76088 0.94602 0.94901 0.94790 0.91941 0.96619 0.96284 0.91960 0.94550 0.93054 0.77111 0.82207 0.82050 0.83754 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.34 71.98 0.67 -2.14 16 2 C 0.13 2.52 2.40 44.99 0.11 2.63 16 3 H 0.08 1.89 7.58 -2.39 -0.02 1.87 16 4 N -0.73 -16.41 4.19 -457.81 -1.92 -18.33 16 5 C 0.70 23.57 8.53 179.05 1.53 25.10 16 6 O -0.64 -26.82 16.01 -4.00 -0.06 -26.89 16 7 N -0.73 -25.26 4.96 -478.53 -2.37 -27.63 16 8 C 0.17 7.36 4.50 86.38 0.39 7.75 16 9 C 0.05 2.44 0.50 -52.93 -0.03 2.42 16 10 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 11 C -0.12 -5.26 8.08 71.98 0.58 -4.68 16 12 C -0.53 -28.24 8.01 25.60 0.21 -28.04 16 13 H 0.04 2.43 7.74 -2.92 -0.02 2.41 16 14 C 0.03 1.52 5.15 84.65 0.44 1.96 16 15 N -0.90 -48.24 9.35 21.45 0.20 -48.04 16 16 Si 0.94 42.92 29.54 68.60 2.03 44.94 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 C 0.16 2.06 3.09 29.85 0.09 2.15 16 21 H 0.15 1.29 8.01 -2.39 -0.02 1.27 16 22 O -0.55 -7.53 12.51 -148.98 -1.86 -9.39 16 23 C -0.09 -1.49 4.88 -19.87 -0.10 -1.58 16 24 C -0.12 -1.59 9.67 22.27 0.22 -1.37 16 25 C -0.09 -1.21 10.04 22.26 0.22 -0.99 16 26 C -0.16 -2.95 10.03 22.32 0.22 -2.72 16 27 C 0.07 1.60 7.30 22.38 0.16 1.77 16 28 F -0.15 -3.94 17.27 44.97 0.78 -3.16 16 29 C -0.15 -2.83 8.30 22.31 0.19 -2.64 16 30 H 0.07 1.19 7.68 -2.39 -0.02 1.17 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.40 6.79 5.48 -92.71 -0.51 6.28 16 34 H 0.40 12.17 6.18 -92.71 -0.57 11.60 16 35 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.03 1.30 6.86 -2.39 -0.02 1.28 16 38 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 39 H 0.01 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 42 H 0.04 1.35 6.86 -2.39 -0.02 1.33 16 43 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 44 H 0.38 3.82 6.12 -74.06 -0.45 3.36 16 45 H 0.16 1.14 8.04 -2.91 -0.02 1.12 16 46 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 47 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 48 H 0.14 2.09 5.49 -2.91 -0.02 2.07 16 Total: -1.00 -68.11 384.49 1.74 -66.37 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: -0.53 Total: 27.24 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 5.48 Total: -5.12 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -4.09 Total: -94.00 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -1.93 Total: -36.28 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.78 Total: -3.16 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -68.11 1.74 -66.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838754354.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.875 kcal (2) G-P(sol) polarization free energy of solvation -68.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds