Wall clock time and date at job start Tue Mar 31 2020 22:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38042 * 126.29552 * 2 1 4 4 C 1.47432 * 126.41038 * 359.95435 * 3 2 1 5 5 O 1.21603 * 120.00137 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99549 * 180.27735 * 4 3 2 7 7 C 1.46505 * 119.99724 * 179.72679 * 6 4 3 8 8 H 1.08999 * 109.50408 * 35.00211 * 7 6 4 9 9 C 1.53119 * 109.50318 * 274.92069 * 7 6 4 10 10 C 1.53116 * 109.16152 * 182.44249 * 9 7 6 11 11 C 1.53038 * 109.30731 * 57.59840 * 10 9 7 12 12 N 1.46852 * 109.52201 * 300.84094 * 11 10 9 13 13 C 1.46903 * 110.99565 * 185.84075 * 12 11 10 14 14 C 1.53000 * 109.47307 * 45.79258 * 13 12 11 15 15 F 1.39905 * 109.46629 * 179.97438 * 14 13 12 16 16 C 1.46842 * 111.19458 * 61.74373 * 12 11 10 17 17 C 1.41292 * 107.17430 * 180.22400 * 3 2 1 18 18 N 1.30447 * 108.01922 * 359.61188 * 17 3 2 19 19 N 1.34258 * 126.28921 * 179.97438 * 2 1 3 20 20 C 1.46503 * 125.75601 * 0.02956 * 19 2 1 21 21 C 1.50704 * 109.47252 * 89.99470 * 20 19 2 22 22 H 1.08005 * 119.99542 * 0.02562 * 21 20 19 23 23 C 1.37875 * 120.00221 * 179.97438 * 21 20 19 24 24 N 1.31516 * 119.99516 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00208 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46974 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46977 * 120.00174 * 25 23 21 28 28 H 1.48502 * 109.47412 * 240.00225 * 25 23 21 29 29 H 1.08998 * 109.46942 * 89.97923 * 1 2 3 30 30 H 1.09003 * 109.47543 * 209.97920 * 1 2 3 31 31 H 1.09003 * 109.47115 * 329.98554 * 1 2 3 32 32 H 0.97000 * 120.00483 * 359.73112 * 6 4 3 33 33 H 1.08992 * 109.52629 * 302.31508 * 9 7 6 34 34 H 1.09002 * 109.52161 * 62.50001 * 9 7 6 35 35 H 1.09004 * 109.47183 * 297.66058 * 10 9 7 36 36 H 1.09000 * 109.54254 * 177.57613 * 10 9 7 37 37 H 1.09008 * 109.46126 * 180.82782 * 11 10 9 38 38 H 1.08994 * 109.45444 * 60.85492 * 11 10 9 39 39 H 1.09007 * 109.46921 * 165.79311 * 13 12 11 40 40 H 1.09004 * 109.46829 * 285.78575 * 13 12 11 41 41 H 1.08997 * 109.47019 * 299.99355 * 14 13 12 42 42 H 1.08994 * 109.47166 * 59.99865 * 14 13 12 43 43 H 1.09006 * 109.46009 * 178.23751 * 16 12 11 44 44 H 1.08998 * 109.45281 * 58.26694 * 16 12 11 45 45 H 1.07995 * 125.98736 * 179.77019 * 17 3 2 46 46 H 1.09000 * 109.47414 * 209.99174 * 20 19 2 47 47 H 1.08993 * 109.47041 * 329.99620 * 20 19 2 48 48 H 0.97007 * 119.99662 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5202 -0.0009 5 8 0.6996 2.7877 -0.0014 6 7 2.8000 3.5106 -0.0065 7 6 2.3645 4.9094 -0.0135 8 1 1.4531 5.0097 0.5758 9 6 2.0937 5.3533 -1.4537 10 6 1.6982 6.8325 -1.4577 11 6 2.8151 7.6566 -0.8131 12 7 3.0346 7.1938 0.5632 13 6 4.0031 8.0519 1.2589 14 6 3.6612 9.5206 1.0003 15 9 4.5832 10.3376 1.6634 16 6 3.4621 5.7892 0.5892 17 6 3.6591 0.6498 -0.0053 18 7 3.6340 -0.6545 0.0002 19 7 2.3016 -1.0822 0.0005 20 6 1.8500 -2.4759 0.0005 21 6 1.6956 -2.9539 -1.4203 22 1 1.9126 -2.2864 -2.2412 23 6 1.2783 -4.2436 -1.6723 24 7 1.0145 -5.0565 -0.6726 25 14 1.0862 -4.8360 -3.4334 26 1 1.4421 -3.7371 -4.3668 27 1 1.9859 -5.9941 -3.6670 28 1 -0.3214 -5.2477 -3.6665 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3633 0.8899 0.5141 32 1 3.7463 3.2972 -0.0059 33 1 2.9938 5.2158 -2.0526 34 1 1.2823 4.7576 -1.8719 35 1 0.7761 6.9636 -0.8915 36 1 1.5458 7.1663 -2.4841 37 1 2.5298 8.7086 -0.8014 38 1 3.7334 7.5358 -1.3877 39 1 3.9619 7.8522 2.3297 40 1 5.0065 7.8416 0.8885 41 1 3.7025 9.7202 -0.0704 42 1 2.6579 9.7307 1.3707 43 1 3.6467 5.4848 1.6195 44 1 4.3773 5.6775 0.0079 45 1 4.5449 1.2675 -0.0101 46 1 2.5844 -3.0958 0.5146 47 1 0.8912 -2.5471 0.5140 48 1 0.7206 -5.9638 -0.8498 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898489092.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:49 Heat of formation + Delta-G solvation = -23.240404 kcal Electronic energy + Delta-G solvation = -28996.169360 eV Core-core repulsion = 24808.343246 eV Total energy + Delta-G solvation = -4187.826114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.05756 -40.82889 -39.91199 -38.38089 -35.20615 -33.93338 -33.20461 -32.08482 -31.21211 -30.50583 -29.01734 -27.23428 -26.60648 -25.05123 -23.65920 -23.20614 -22.36788 -21.37474 -20.30905 -19.77125 -18.95672 -17.28456 -17.13010 -16.78231 -16.67648 -16.05088 -15.67702 -15.23148 -15.11276 -14.94391 -14.71553 -14.56021 -14.33856 -14.08975 -14.00832 -13.70133 -13.27901 -13.19918 -12.98475 -12.67149 -12.55906 -12.44282 -12.11043 -11.81088 -11.76305 -11.61741 -11.47865 -11.35365 -11.12639 -11.01948 -10.97157 -10.91943 -10.71126 -10.38397 -10.18568 -9.92487 -9.39726 -8.98678 -8.84926 -8.72773 -8.59769 -7.92362 -6.34982 -4.42650 2.18383 2.78512 2.93504 3.15798 3.23764 3.26847 3.36179 3.69947 3.90766 4.08806 4.23152 4.26128 4.38427 4.53506 4.59663 4.70585 4.81374 4.91383 4.98173 4.98999 5.07517 5.10714 5.21276 5.23619 5.31069 5.36379 5.42269 5.50964 5.56510 5.65315 5.73614 5.80994 5.90834 6.05093 6.11604 6.12770 6.38507 6.45079 6.51956 6.57125 6.68568 6.79197 6.89963 7.14935 7.55105 7.72333 7.75955 7.78373 8.36795 8.60450 8.63722 9.24296 10.73277 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.027588 B = 0.001951 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.697721 B =14344.918235 C =14647.084088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.166 3.834 3 C -0.333 4.333 4 C 0.607 3.393 5 O -0.553 6.553 6 N -0.732 5.732 7 C 0.155 3.845 8 H 0.097 0.903 9 C -0.133 4.133 10 C -0.114 4.114 11 C 0.042 3.958 12 N -0.530 5.530 13 C 0.025 3.975 14 C 0.057 3.943 15 F -0.216 7.216 16 C 0.052 3.948 17 C 0.057 3.943 18 N -0.296 5.296 19 N -0.314 5.314 20 C 0.250 3.750 21 C -0.539 4.539 22 H 0.066 0.934 23 C 0.067 3.933 24 N -0.889 5.889 25 Si 0.908 3.092 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.396 0.604 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.037 0.963 39 H 0.090 0.910 40 H 0.047 0.953 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.041 0.959 45 H 0.174 0.826 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.146 25.628 1.835 26.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.028 3.972 3 C -0.349 4.349 4 C 0.398 3.602 5 O -0.432 6.432 6 N -0.384 5.384 7 C 0.049 3.951 8 H 0.115 0.885 9 C -0.172 4.172 10 C -0.152 4.152 11 C -0.086 4.086 12 N -0.256 5.256 13 C -0.104 4.104 14 C 0.002 3.998 15 F -0.198 7.198 16 C -0.077 4.077 17 C -0.130 4.130 18 N -0.116 5.116 19 N -0.091 5.091 20 C 0.133 3.867 21 C -0.577 4.577 22 H 0.084 0.916 23 C -0.137 4.137 24 N -0.527 5.527 25 Si 0.735 3.265 26 H -0.195 1.195 27 H -0.206 1.206 28 H -0.205 1.205 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.230 0.770 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.059 0.941 45 H 0.191 0.809 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.498 24.405 2.166 24.749 hybrid contribution 0.941 0.045 -1.375 1.666 sum 4.439 24.450 0.791 24.862 Atomic orbital electron populations 1.20570 0.86805 1.03795 1.03910 1.21482 0.94966 0.86536 0.94179 1.19670 0.93103 0.92505 1.29598 1.17276 0.84992 0.83806 0.74168 1.90693 1.16648 1.84382 1.51472 1.45705 1.09722 1.05127 1.77826 1.20745 0.98118 0.79849 0.96355 0.88461 1.22013 1.02243 0.96050 0.96905 1.21542 0.98668 0.94433 1.00574 1.22358 0.98472 0.99722 0.88001 1.61833 1.45414 1.01960 1.16349 1.22659 0.94586 0.92039 1.01078 1.22161 0.91971 0.88417 0.97236 1.92779 1.69381 1.74250 1.83359 1.22293 0.96264 0.87361 1.01761 1.23702 0.96315 0.92628 1.00339 1.77137 0.98654 1.12282 1.23514 1.49367 1.02466 1.08308 1.48913 1.19862 0.96426 0.70925 0.99465 1.21283 1.47322 0.98121 0.91008 0.91626 1.24928 0.94470 0.96009 0.98308 1.69926 1.44552 1.07149 1.31047 0.86269 0.77972 0.78835 0.83444 1.19543 1.20574 1.20533 0.89862 0.90893 0.88786 0.77020 0.92122 0.90639 0.90605 0.91039 0.90123 0.94432 0.89182 0.93496 0.90450 0.89620 0.89776 0.94072 0.80864 0.92512 0.92529 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.66 9.57 36.00 0.34 -1.32 16 2 C 0.17 3.34 7.01 -81.60 -0.57 2.76 16 3 C -0.33 -5.95 6.13 -105.06 -0.64 -6.59 16 4 C 0.61 9.68 7.78 -12.52 -0.10 9.58 16 5 O -0.55 -10.18 14.50 5.27 0.08 -10.10 16 6 N -0.73 -8.45 5.07 -54.80 -0.28 -8.73 16 7 C 0.15 1.57 2.62 -67.85 -0.18 1.39 16 8 H 0.10 1.21 7.58 -51.93 -0.39 0.82 16 9 C -0.13 -1.28 5.58 -26.61 -0.15 -1.43 16 10 C -0.11 -0.85 6.09 -26.65 -0.16 -1.01 16 11 C 0.04 0.27 4.85 -3.83 -0.02 0.25 16 12 N -0.53 -3.82 4.81 -234.66 -1.13 -4.95 16 13 C 0.02 0.15 5.73 -3.82 -0.02 0.13 16 14 C 0.06 0.32 6.80 37.16 0.25 0.58 16 15 F -0.22 -1.80 17.36 2.25 0.04 -1.76 16 16 C 0.05 0.40 4.89 -3.84 -0.02 0.38 16 17 C 0.06 0.97 11.50 -16.98 -0.20 0.78 16 18 N -0.30 -6.29 12.50 30.86 0.39 -5.90 16 19 N -0.31 -7.03 3.56 -57.77 -0.21 -7.24 16 20 C 0.25 6.20 5.97 -5.19 -0.03 6.17 16 21 C -0.54 -14.46 9.39 -34.44 -0.32 -14.79 16 22 H 0.07 1.82 7.81 -52.48 -0.41 1.41 16 23 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -24.50 13.29 55.43 0.74 -23.76 16 25 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 30 H 0.07 1.28 7.05 -51.93 -0.37 0.91 16 31 H 0.09 1.61 6.50 -51.93 -0.34 1.27 16 32 H 0.40 3.65 7.56 -40.82 -0.31 3.34 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.39 5.81 -51.92 -0.30 0.09 16 38 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 39 H 0.09 0.57 8.14 -51.92 -0.42 0.14 16 40 H 0.05 0.29 8.08 -51.93 -0.42 -0.13 16 41 H 0.08 0.34 6.21 -51.93 -0.32 0.02 16 42 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 44 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.17 2.08 7.50 -52.49 -0.39 1.68 16 46 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 47 H 0.06 1.39 7.01 -51.93 -0.36 1.03 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 390.27 15.07 5.88 5.88 Total: -1.00 -30.96 390.27 -8.83 -39.79 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.40 Total: 2.48 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -1.91 Total: -1.43 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.49 Total: -50.58 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.08 Total: -10.10 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.96 -8.83 -39.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898489092.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.548 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds