Wall clock time and date at job start Tue Mar 31 2020 22:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38042 * 126.29552 * 2 1 4 4 C 1.47432 * 126.41038 * 359.95435 * 3 2 1 5 5 O 1.21603 * 120.00137 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99549 * 180.27735 * 4 3 2 7 7 C 1.46505 * 119.99724 * 179.72679 * 6 4 3 8 8 H 1.08999 * 109.50408 * 35.00211 * 7 6 4 9 9 C 1.53119 * 109.50318 * 274.92069 * 7 6 4 10 10 C 1.53116 * 109.16152 * 182.44249 * 9 7 6 11 11 C 1.53038 * 109.30731 * 57.59840 * 10 9 7 12 12 N 1.46852 * 109.52201 * 300.84094 * 11 10 9 13 13 C 1.46903 * 110.99565 * 185.84075 * 12 11 10 14 14 C 1.53000 * 109.47307 * 45.79258 * 13 12 11 15 15 F 1.39905 * 109.46629 * 179.97438 * 14 13 12 16 16 C 1.46842 * 111.19458 * 61.74373 * 12 11 10 17 17 C 1.41292 * 107.17430 * 180.22400 * 3 2 1 18 18 N 1.30447 * 108.01922 * 359.61188 * 17 3 2 19 19 N 1.34258 * 126.28921 * 179.97438 * 2 1 3 20 20 C 1.46503 * 125.75601 * 0.02956 * 19 2 1 21 21 C 1.50704 * 109.47252 * 89.99470 * 20 19 2 22 22 H 1.08005 * 119.99542 * 0.02562 * 21 20 19 23 23 C 1.37875 * 120.00221 * 179.97438 * 21 20 19 24 24 N 1.31516 * 119.99516 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00208 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46974 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46977 * 120.00174 * 25 23 21 28 28 H 1.48502 * 109.47412 * 240.00225 * 25 23 21 29 29 H 1.08998 * 109.46942 * 89.97923 * 1 2 3 30 30 H 1.09003 * 109.47543 * 209.97920 * 1 2 3 31 31 H 1.09003 * 109.47115 * 329.98554 * 1 2 3 32 32 H 0.97000 * 120.00483 * 359.73112 * 6 4 3 33 33 H 1.08992 * 109.52629 * 302.31508 * 9 7 6 34 34 H 1.09002 * 109.52161 * 62.50001 * 9 7 6 35 35 H 1.09004 * 109.47183 * 297.66058 * 10 9 7 36 36 H 1.09000 * 109.54254 * 177.57613 * 10 9 7 37 37 H 1.09008 * 109.46126 * 180.82782 * 11 10 9 38 38 H 1.08994 * 109.45444 * 60.85492 * 11 10 9 39 39 H 1.09007 * 109.46921 * 165.79311 * 13 12 11 40 40 H 1.09004 * 109.46829 * 285.78575 * 13 12 11 41 41 H 1.08997 * 109.47019 * 299.99355 * 14 13 12 42 42 H 1.08994 * 109.47166 * 59.99865 * 14 13 12 43 43 H 1.09006 * 109.46009 * 178.23751 * 16 12 11 44 44 H 1.08998 * 109.45281 * 58.26694 * 16 12 11 45 45 H 1.07995 * 125.98736 * 179.77019 * 17 3 2 46 46 H 1.09000 * 109.47414 * 209.99174 * 20 19 2 47 47 H 1.08993 * 109.47041 * 329.99620 * 20 19 2 48 48 H 0.97007 * 119.99662 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5202 -0.0009 5 8 0.6996 2.7877 -0.0014 6 7 2.8000 3.5106 -0.0065 7 6 2.3645 4.9094 -0.0135 8 1 1.4531 5.0097 0.5758 9 6 2.0937 5.3533 -1.4537 10 6 1.6982 6.8325 -1.4577 11 6 2.8151 7.6566 -0.8131 12 7 3.0346 7.1938 0.5632 13 6 4.0031 8.0519 1.2589 14 6 3.6612 9.5206 1.0003 15 9 4.5832 10.3376 1.6634 16 6 3.4621 5.7892 0.5892 17 6 3.6591 0.6498 -0.0053 18 7 3.6340 -0.6545 0.0002 19 7 2.3016 -1.0822 0.0005 20 6 1.8500 -2.4759 0.0005 21 6 1.6956 -2.9539 -1.4203 22 1 1.9126 -2.2864 -2.2412 23 6 1.2783 -4.2436 -1.6723 24 7 1.0145 -5.0565 -0.6726 25 14 1.0862 -4.8360 -3.4334 26 1 1.4421 -3.7371 -4.3668 27 1 1.9859 -5.9941 -3.6670 28 1 -0.3214 -5.2477 -3.6665 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3633 0.8899 0.5141 32 1 3.7463 3.2972 -0.0059 33 1 2.9938 5.2158 -2.0526 34 1 1.2823 4.7576 -1.8719 35 1 0.7761 6.9636 -0.8915 36 1 1.5458 7.1663 -2.4841 37 1 2.5298 8.7086 -0.8014 38 1 3.7334 7.5358 -1.3877 39 1 3.9619 7.8522 2.3297 40 1 5.0065 7.8416 0.8885 41 1 3.7025 9.7202 -0.0704 42 1 2.6579 9.7307 1.3707 43 1 3.6467 5.4848 1.6195 44 1 4.3773 5.6775 0.0079 45 1 4.5449 1.2675 -0.0101 46 1 2.5844 -3.0958 0.5146 47 1 0.8912 -2.5471 0.5140 48 1 0.7206 -5.9638 -0.8498 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898489092.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:48 Heat of formation + Delta-G solvation = -43.973732 kcal Electronic energy + Delta-G solvation = -28997.068424 eV Core-core repulsion = 24808.343246 eV Total energy + Delta-G solvation = -4188.725178 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.59233 -42.31247 -40.79131 -39.41581 -36.12786 -35.80532 -34.16022 -33.66234 -32.73082 -31.29413 -29.82601 -28.88589 -28.06271 -25.75920 -25.30687 -24.07546 -23.44562 -22.27670 -21.19933 -20.99114 -20.34334 -18.87034 -18.45192 -17.81466 -17.16519 -17.01079 -16.79116 -16.43441 -16.32105 -16.07623 -15.76187 -15.51430 -15.42796 -15.24272 -14.87611 -14.75400 -14.47796 -14.19110 -14.09018 -14.04423 -13.71106 -13.63812 -13.53900 -13.23856 -13.08493 -12.96461 -12.71623 -12.42235 -12.33503 -12.20720 -11.90344 -11.84196 -11.73518 -11.71565 -11.55118 -11.35020 -10.77344 -10.73800 -10.26243 -10.05438 -9.43131 -9.36842 -8.38722 -6.54940 0.69552 1.33527 1.35543 1.38708 1.49028 1.65272 2.19186 2.31994 2.56576 2.91940 2.94243 3.60945 3.69029 3.75071 3.81362 3.87592 3.90583 4.03812 4.14353 4.17938 4.23509 4.24544 4.35342 4.45416 4.51557 4.57305 4.61016 4.64110 4.69264 4.79034 4.80814 4.88617 4.89413 4.94570 5.01906 5.06960 5.13493 5.18314 5.28035 5.39033 5.48550 5.56675 5.69410 5.74244 5.96674 6.03019 6.04826 6.54367 6.65722 6.86053 7.16162 7.40124 8.69358 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.027588 B = 0.001951 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.697721 B =14344.918235 C =14647.084088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.144 3.856 3 C -0.330 4.330 4 C 0.608 3.392 5 O -0.581 6.581 6 N -0.712 5.712 7 C 0.156 3.844 8 H 0.072 0.928 9 C -0.130 4.130 10 C -0.110 4.110 11 C 0.043 3.957 12 N -0.540 5.540 13 C 0.028 3.972 14 C 0.056 3.944 15 F -0.232 7.232 16 C 0.059 3.941 17 C 0.080 3.920 18 N -0.337 5.337 19 N -0.338 5.338 20 C 0.266 3.734 21 C -0.554 4.554 22 H 0.051 0.949 23 C 0.023 3.977 24 N -0.916 5.916 25 Si 0.972 3.028 26 H -0.273 1.273 27 H -0.273 1.273 28 H -0.269 1.269 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.411 0.589 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.046 0.954 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.056 0.944 45 H 0.227 0.773 46 H 0.032 0.968 47 H 0.050 0.950 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.335 27.844 0.835 28.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.008 3.992 3 C -0.346 4.346 4 C 0.398 3.602 5 O -0.462 6.462 6 N -0.363 5.363 7 C 0.051 3.949 8 H 0.090 0.910 9 C -0.169 4.169 10 C -0.148 4.148 11 C -0.084 4.084 12 N -0.266 5.266 13 C -0.100 4.100 14 C 0.001 3.999 15 F -0.213 7.213 16 C -0.070 4.070 17 C -0.107 4.107 18 N -0.157 5.157 19 N -0.115 5.115 20 C 0.148 3.852 21 C -0.592 4.592 22 H 0.070 0.930 23 C -0.179 4.179 24 N -0.554 5.554 25 Si 0.796 3.204 26 H -0.197 1.197 27 H -0.198 1.198 28 H -0.194 1.194 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.248 0.752 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.075 0.925 45 H 0.243 0.757 46 H 0.050 0.950 47 H 0.068 0.932 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.718 26.662 1.176 27.101 hybrid contribution 0.592 -0.506 -1.026 1.288 sum 5.310 26.155 0.151 26.689 Atomic orbital electron populations 1.20540 0.85987 1.03987 1.03854 1.21969 0.95909 0.86811 0.94499 1.19964 0.93264 0.93058 1.28267 1.17077 0.85084 0.83746 0.74333 1.90684 1.17996 1.84636 1.52903 1.45520 1.09867 1.05063 1.75875 1.20799 0.98200 0.79175 0.96712 0.90961 1.21962 1.01571 0.97174 0.96204 1.21519 0.98746 0.93077 1.01481 1.22400 0.98222 1.00380 0.87429 1.61793 1.45968 1.01711 1.17081 1.22618 0.94445 0.92128 1.00795 1.22281 0.91807 0.87721 0.98070 1.92749 1.70052 1.74725 1.83814 1.22178 0.95535 0.87348 1.01889 1.24504 0.97634 0.91568 0.96976 1.77090 0.98303 1.14510 1.25780 1.49092 1.03397 1.07717 1.51325 1.19370 0.95292 0.72422 0.98151 1.21414 1.47815 0.98441 0.91541 0.93048 1.25737 0.93864 0.95966 1.02286 1.70005 1.44883 1.07597 1.32961 0.85291 0.78443 0.78178 0.78480 1.19721 1.19845 1.19364 0.89989 0.91141 0.88005 0.75245 0.91159 0.93550 0.91661 0.89685 0.88311 0.93604 0.89501 0.93117 0.88792 0.88970 0.89541 0.92542 0.75666 0.95038 0.93188 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.16 9.57 71.24 0.68 -2.48 16 2 C 0.14 5.89 7.01 42.14 0.30 6.18 16 3 C -0.33 -11.51 6.13 -20.15 -0.12 -11.64 16 4 C 0.61 18.79 7.78 86.66 0.67 19.46 16 5 O -0.58 -21.36 14.50 -4.04 -0.06 -21.42 16 6 N -0.71 -14.97 5.07 -445.54 -2.26 -17.23 16 7 C 0.16 2.91 2.62 45.04 0.12 3.03 16 8 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 9 C -0.13 -2.31 5.58 30.67 0.17 -2.13 16 10 C -0.11 -1.42 6.09 30.65 0.19 -1.23 16 11 C 0.04 0.41 4.85 86.33 0.42 0.83 16 12 N -0.54 -6.38 4.81 -896.33 -4.31 -10.69 16 13 C 0.03 0.28 5.73 86.30 0.49 0.77 16 14 C 0.06 0.49 6.80 71.98 0.49 0.98 16 15 F -0.23 -3.42 17.36 44.97 0.78 -2.64 16 16 C 0.06 0.76 4.89 86.33 0.42 1.18 16 17 C 0.08 2.57 11.50 85.65 0.99 3.56 16 18 N -0.34 -14.31 12.50 -56.28 -0.70 -15.02 16 19 N -0.34 -15.56 3.56 -336.70 -1.20 -16.76 16 20 C 0.27 13.77 5.97 85.63 0.51 14.28 16 21 C -0.55 -30.55 9.39 25.60 0.24 -30.31 16 22 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 23 C 0.02 1.23 5.46 84.65 0.46 1.69 16 24 N -0.92 -51.25 13.29 21.45 0.28 -50.97 16 25 Si 0.97 42.66 29.54 68.60 2.03 44.69 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 29 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 30 H 0.07 2.58 7.05 -2.39 -0.02 2.56 16 31 H 0.10 3.55 6.50 -2.39 -0.02 3.54 16 32 H 0.41 6.18 7.56 -92.71 -0.70 5.48 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.10 0.61 5.81 -2.38 -0.01 0.60 16 38 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.05 0.47 8.08 -2.39 -0.02 0.45 16 41 H 0.09 0.51 6.21 -2.39 -0.01 0.50 16 42 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.09 1.10 8.12 -2.38 -0.02 1.08 16 44 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.23 4.48 7.50 -2.91 -0.02 4.46 16 46 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.05 2.59 7.01 -2.39 -0.02 2.58 16 48 H 0.27 14.28 8.31 -92.70 -0.77 13.51 16 Total: -1.00 -68.81 390.27 0.87 -67.94 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.28 Total: 17.92 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 6.03 Total: 4.18 kcal Atomic # 7 Polarization: -102.48 SS G_CDS: -8.19 Total: -110.67 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.06 Total: -21.42 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.78 Total: -2.64 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -68.81 0.87 -67.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898489092.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.969 kcal (2) G-P(sol) polarization free energy of solvation -68.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds