Wall clock time and date at job start Tue Mar 31 2020 21:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81402 * 109.47427 * 2 1 4 4 C 1.76192 * 103.00001 * 179.97438 * 3 2 1 5 5 C 1.38974 * 120.08321 * 359.72039 * 4 3 2 6 6 C 1.38086 * 119.92204 * 179.76867 * 5 4 3 7 7 C 1.38309 * 120.07608 * 0.48822 * 6 5 4 8 8 C 1.50695 * 119.91731 * 179.74622 * 7 6 5 9 9 N 1.46896 * 109.47165 * 270.02045 * 8 7 6 10 10 C 1.46897 * 110.99940 * 179.97438 * 9 8 7 11 11 C 1.53009 * 109.46900 * 180.02562 * 10 9 8 12 12 H 1.08996 * 109.46852 * 60.00685 * 11 10 9 13 13 O 1.42902 * 109.46886 * 299.99955 * 11 10 9 14 14 C 1.53005 * 109.46925 * 180.02562 * 11 10 9 15 15 N 1.46897 * 109.46940 * 180.46346 * 14 11 10 16 16 C 1.46898 * 111.00050 * 199.84723 * 15 14 11 17 17 C 1.46896 * 111.00049 * 75.89678 * 15 14 11 18 18 C 1.50706 * 109.47175 * 190.00144 * 17 15 14 19 19 H 1.07994 * 119.99953 * 359.97438 * 18 17 15 20 20 C 1.37872 * 119.99953 * 180.02562 * 18 17 15 21 21 N 1.31513 * 120.00174 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99915 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46989 * 89.99684 * 22 20 18 24 24 H 1.48499 * 109.46956 * 209.99257 * 22 20 18 25 25 H 1.48495 * 109.47089 * 329.99802 * 22 20 18 26 26 C 1.38302 * 120.16329 * 359.76610 * 7 6 5 27 27 C 1.38091 * 120.07699 * 0.02562 * 26 7 6 28 28 H 1.09000 * 109.47094 * 300.00772 * 1 2 3 29 29 H 1.09005 * 109.46547 * 60.00182 * 1 2 3 30 30 H 1.09001 * 109.46995 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47342 * 239.99682 * 2 1 3 32 32 H 1.09005 * 109.46547 * 119.99818 * 2 1 3 33 33 H 1.07997 * 120.03966 * 0.02562 * 5 4 3 34 34 H 1.07996 * 119.96252 * 180.23938 * 6 5 4 35 35 H 1.09003 * 109.47344 * 30.02511 * 8 7 6 36 36 H 1.09003 * 109.47454 * 150.01839 * 8 7 6 37 37 H 1.00902 * 110.99899 * 56.05148 * 9 8 7 38 38 H 1.08995 * 109.47748 * 299.99957 * 10 9 8 39 39 H 1.08998 * 109.47324 * 60.00715 * 10 9 8 40 40 H 0.96692 * 114.00341 * 300.00082 * 13 11 10 41 41 H 1.09006 * 109.46985 * 300.46180 * 14 11 10 42 42 H 1.09001 * 109.47428 * 60.46152 * 14 11 10 43 43 H 1.09004 * 109.46806 * 64.82102 * 16 15 14 44 44 H 1.08998 * 109.47183 * 184.82090 * 16 15 14 45 45 H 1.09007 * 109.47317 * 304.82331 * 16 15 14 46 46 H 1.09007 * 109.47162 * 309.99904 * 17 15 14 47 47 H 1.08996 * 109.47652 * 69.99909 * 17 15 14 48 48 H 0.97007 * 120.00362 * 180.02562 * 21 20 18 49 49 H 1.07997 * 119.96027 * 179.97438 * 26 7 6 50 50 H 1.07998 * 120.03214 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 6 3.8855 1.5116 0.0008 5 6 4.4421 0.2382 0.0071 6 6 5.8145 0.0863 0.0028 7 6 6.6351 1.1997 0.0025 8 6 8.1324 1.0298 0.0036 9 7 8.6180 0.9752 1.3890 10 6 10.0770 0.8090 1.4292 11 6 10.5442 0.7559 2.8853 12 1 10.0687 -0.0857 3.3889 13 8 10.1847 1.9712 3.5455 14 6 12.0639 0.5835 2.9272 15 7 12.5112 0.5213 4.3251 16 6 13.9440 0.8268 4.4334 17 6 12.2058 -0.7876 4.9178 18 6 12.4498 -0.7353 6.4041 19 1 12.7974 0.1788 6.8623 20 6 12.2303 -1.8546 7.1785 21 7 11.8075 -2.9678 6.6204 22 14 12.5335 -1.7899 9.0207 23 1 11.2881 -1.3715 9.7129 24 1 12.9400 -3.1343 9.5029 25 1 13.6132 -0.8126 9.3106 26 6 6.0848 2.4685 0.0016 27 6 4.7131 2.6280 0.0015 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8019 -0.6316 0.0111 34 1 6.2477 -0.9030 0.0038 35 1 8.3935 0.1043 -0.5097 36 1 8.5942 1.8729 -0.5102 37 1 8.1565 0.2413 1.9052 38 1 10.3512 -0.1181 0.9260 39 1 10.5525 1.6504 0.9253 40 1 10.5731 2.7634 3.1500 41 1 12.3391 -0.3393 2.4163 42 1 12.5395 1.4294 2.4309 43 1 14.1192 1.8593 4.1311 44 1 14.2676 0.6904 5.4653 45 1 14.5084 0.1574 3.7841 46 1 11.1615 -1.0369 4.7297 47 1 12.8469 -1.5474 4.4709 48 1 11.6527 -3.7553 7.1653 49 1 6.7286 3.3356 0.0017 50 1 4.2842 3.6191 0.0012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905410738.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:21 Heat of formation + Delta-G solvation = -27.114812 kcal Electronic energy + Delta-G solvation = -25875.658117 eV Core-core repulsion = 22221.584421 eV Total energy + Delta-G solvation = -3654.073696 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.53697 -38.07905 -36.02878 -34.93149 -33.43077 -32.46633 -31.86315 -31.17812 -29.46206 -27.31314 -26.48458 -24.68785 -24.18995 -23.12445 -22.57981 -21.64384 -21.33524 -19.99996 -17.85231 -16.72634 -16.49175 -16.22811 -15.70172 -15.43572 -15.33376 -15.22505 -14.94412 -14.64801 -14.56898 -14.14039 -14.11373 -13.73517 -13.50094 -13.27168 -13.04743 -12.86420 -12.76327 -12.35937 -12.11320 -11.96723 -11.95531 -11.79889 -11.48192 -11.37545 -11.19126 -11.09576 -10.88476 -10.67112 -10.59757 -10.50036 -10.33324 -9.89575 -9.74539 -9.46678 -9.20165 -9.10190 -8.43931 -8.39975 -7.65526 -7.17656 -6.00326 -4.00504 0.92818 1.15410 1.17376 2.07830 3.35046 3.38750 3.40565 3.44309 4.15577 4.40379 4.43014 4.45965 4.52880 4.64275 4.67133 4.83277 4.88244 4.98136 5.06785 5.14737 5.22348 5.27463 5.29231 5.33962 5.35660 5.41734 5.48816 5.56859 5.58137 5.64693 5.73118 5.75047 5.79265 6.00346 6.04987 6.06598 6.15548 6.33604 6.39359 6.51243 6.65512 6.74571 6.91673 7.29047 7.31030 7.33192 7.82996 8.10953 8.20611 8.30507 8.58432 9.06884 9.63300 11.10794 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012934 B = 0.001867 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.249164 B =14993.187656 C =16445.853085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 S -0.125 6.125 4 C -0.084 4.084 5 C -0.133 4.133 6 C -0.094 4.094 7 C -0.082 4.082 8 C 0.098 3.902 9 N -0.673 5.673 10 C 0.027 3.973 11 C 0.119 3.881 12 H 0.099 0.901 13 O -0.530 6.530 14 C 0.026 3.974 15 N -0.530 5.530 16 C 0.038 3.962 17 C 0.193 3.807 18 C -0.503 4.503 19 H 0.064 0.936 20 C 0.053 3.947 21 N -0.901 5.901 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.288 1.288 25 H -0.274 1.274 26 C -0.076 4.076 27 C -0.101 4.101 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.036 0.964 36 H 0.079 0.921 37 H 0.345 0.655 38 H 0.035 0.965 39 H 0.072 0.928 40 H 0.360 0.640 41 H 0.030 0.970 42 H 0.060 0.940 43 H 0.044 0.956 44 H 0.077 0.923 45 H 0.007 0.993 46 H 0.030 0.970 47 H -0.012 1.012 48 H 0.260 0.740 49 H 0.130 0.870 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.585 7.618 -19.686 26.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.259 4.259 3 S 0.117 5.883 4 C -0.197 4.197 5 C -0.157 4.157 6 C -0.114 4.114 7 C -0.085 4.085 8 C -0.031 4.031 9 N -0.304 5.304 10 C -0.103 4.103 11 C 0.059 3.941 12 H 0.116 0.884 13 O -0.332 6.332 14 C -0.104 4.104 15 N -0.254 5.254 16 C -0.111 4.111 17 C 0.068 3.932 18 C -0.542 4.542 19 H 0.082 0.918 20 C -0.147 4.147 21 N -0.541 5.541 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.214 1.214 25 H -0.199 1.199 26 C -0.097 4.097 27 C -0.125 4.125 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.054 0.946 36 H 0.098 0.902 37 H 0.164 0.836 38 H 0.054 0.946 39 H 0.091 0.909 40 H 0.205 0.795 41 H 0.048 0.952 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.095 0.905 45 H 0.025 0.975 46 H 0.048 0.952 47 H 0.005 0.995 48 H 0.070 0.930 49 H 0.148 0.852 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.970 9.009 -18.917 27.604 hybrid contribution 1.841 -2.607 -0.142 3.195 sum -16.129 6.402 -19.059 25.776 Atomic orbital electron populations 1.21523 0.91736 1.03031 1.03332 1.23606 1.00530 0.96096 1.05690 1.85494 0.98187 1.11883 1.92716 1.21681 0.96503 0.96481 1.05006 1.21081 0.95702 0.95438 1.03443 1.20966 0.92867 0.98538 0.99042 1.19827 0.95242 0.93202 1.00217 1.20890 0.90536 1.00917 0.90768 1.60412 1.04806 1.53590 1.11570 1.22744 0.88356 1.00313 0.98850 1.21845 0.93526 0.89118 0.89651 0.88367 1.86687 1.74057 1.14817 1.57611 1.22674 0.95895 0.99652 0.92144 1.62009 1.15295 1.35112 1.12987 1.22228 0.88761 0.97853 1.02246 1.19761 0.96132 0.82655 0.94694 1.21164 1.43912 0.97054 0.92047 0.91826 1.24991 0.95492 0.95383 0.98875 1.69956 1.46724 1.01713 1.35695 0.86488 0.78595 0.77043 0.85232 1.20574 1.21415 1.19876 1.20970 0.94060 0.97096 0.97542 1.20755 0.93053 0.97293 1.01361 0.91439 0.91565 0.90674 0.89446 0.89274 0.86040 0.85874 0.94557 0.90213 0.83613 0.94642 0.90917 0.79460 0.95199 0.92168 0.93730 0.90466 0.97479 0.95214 0.99469 0.93016 0.85241 0.85529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 9.92 37.16 0.37 -0.32 16 2 C -0.11 -0.72 5.05 37.16 0.19 -0.53 16 3 S -0.13 -1.13 21.92 -107.50 -2.36 -3.49 16 4 C -0.08 -0.87 6.11 -39.04 -0.24 -1.11 16 5 C -0.13 -1.30 9.36 -39.36 -0.37 -1.67 16 6 C -0.09 -0.93 9.69 -39.61 -0.38 -1.32 16 7 C -0.08 -0.85 5.40 -104.57 -0.56 -1.41 16 8 C 0.10 0.97 5.81 -4.98 -0.03 0.94 16 9 N -0.67 -8.16 6.36 -115.06 -0.73 -8.89 16 10 C 0.03 0.34 5.35 -3.82 -0.02 0.32 16 11 C 0.12 1.93 3.24 -26.72 -0.09 1.84 16 12 H 0.10 1.89 6.78 -51.93 -0.35 1.54 16 13 O -0.53 -9.20 13.08 -35.23 -0.46 -9.66 16 14 C 0.03 0.45 4.66 -3.82 -0.02 0.43 16 15 N -0.53 -11.52 4.56 -244.36 -1.11 -12.63 16 16 C 0.04 0.74 9.37 60.06 0.56 1.30 16 17 C 0.19 5.07 4.55 -4.98 -0.02 5.05 16 18 C -0.50 -14.43 8.39 -34.44 -0.29 -14.71 16 19 H 0.06 1.82 7.16 -52.49 -0.38 1.44 16 20 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 21 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 22 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 26 C -0.08 -0.77 9.69 -39.61 -0.38 -1.16 16 27 C -0.10 -1.03 9.79 -39.36 -0.39 -1.42 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.51 7.76 -51.93 -0.40 0.11 16 32 H 0.09 0.57 7.74 -51.92 -0.40 0.17 16 33 H 0.12 0.97 5.88 -52.49 -0.31 0.67 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 36 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 37 H 0.35 4.46 8.72 -39.29 -0.34 4.11 16 38 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.36 4.90 9.04 45.56 0.41 5.31 16 41 H 0.03 0.52 8.00 -51.93 -0.42 0.11 16 42 H 0.06 0.88 7.94 -51.93 -0.41 0.47 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 1.64 6.66 -51.93 -0.35 1.30 16 45 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 46 H 0.03 0.83 6.63 -51.93 -0.34 0.49 16 47 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 48 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 49 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 50 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 417.97 15.07 6.30 6.30 Total: -1.00 -32.45 417.97 -12.33 -44.78 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -7.91 Total: 5.17 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -1.77 Total: -12.32 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: -1.11 Total: -47.82 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.46 Total: -9.66 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -2.36 Total: -3.49 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -32.45 -12.33 -44.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905410738.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.663 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds