Wall clock time and date at job start Tue Mar 31 2020 21:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81402 * 109.47427 * 2 1 4 4 C 1.76192 * 103.00001 * 179.97438 * 3 2 1 5 5 C 1.38974 * 120.08321 * 359.72039 * 4 3 2 6 6 C 1.38086 * 119.92204 * 179.76867 * 5 4 3 7 7 C 1.38309 * 120.07608 * 0.48822 * 6 5 4 8 8 C 1.50695 * 119.91731 * 179.74622 * 7 6 5 9 9 N 1.46896 * 109.47165 * 270.02045 * 8 7 6 10 10 C 1.46897 * 110.99940 * 179.97438 * 9 8 7 11 11 C 1.53009 * 109.46900 * 180.02562 * 10 9 8 12 12 H 1.08996 * 109.46852 * 60.00685 * 11 10 9 13 13 O 1.42902 * 109.46886 * 299.99955 * 11 10 9 14 14 C 1.53005 * 109.46925 * 180.02562 * 11 10 9 15 15 N 1.46897 * 109.46940 * 180.46346 * 14 11 10 16 16 C 1.46898 * 111.00050 * 199.84723 * 15 14 11 17 17 C 1.46896 * 111.00049 * 75.89678 * 15 14 11 18 18 C 1.50706 * 109.47175 * 190.00144 * 17 15 14 19 19 H 1.07994 * 119.99953 * 359.97438 * 18 17 15 20 20 C 1.37872 * 119.99953 * 180.02562 * 18 17 15 21 21 N 1.31513 * 120.00174 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99915 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46989 * 89.99684 * 22 20 18 24 24 H 1.48499 * 109.46956 * 209.99257 * 22 20 18 25 25 H 1.48495 * 109.47089 * 329.99802 * 22 20 18 26 26 C 1.38302 * 120.16329 * 359.76610 * 7 6 5 27 27 C 1.38091 * 120.07699 * 0.02562 * 26 7 6 28 28 H 1.09000 * 109.47094 * 300.00772 * 1 2 3 29 29 H 1.09005 * 109.46547 * 60.00182 * 1 2 3 30 30 H 1.09001 * 109.46995 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47342 * 239.99682 * 2 1 3 32 32 H 1.09005 * 109.46547 * 119.99818 * 2 1 3 33 33 H 1.07997 * 120.03966 * 0.02562 * 5 4 3 34 34 H 1.07996 * 119.96252 * 180.23938 * 6 5 4 35 35 H 1.09003 * 109.47344 * 30.02511 * 8 7 6 36 36 H 1.09003 * 109.47454 * 150.01839 * 8 7 6 37 37 H 1.00902 * 110.99899 * 56.05148 * 9 8 7 38 38 H 1.08995 * 109.47748 * 299.99957 * 10 9 8 39 39 H 1.08998 * 109.47324 * 60.00715 * 10 9 8 40 40 H 0.96692 * 114.00341 * 300.00082 * 13 11 10 41 41 H 1.09006 * 109.46985 * 300.46180 * 14 11 10 42 42 H 1.09001 * 109.47428 * 60.46152 * 14 11 10 43 43 H 1.09004 * 109.46806 * 64.82102 * 16 15 14 44 44 H 1.08998 * 109.47183 * 184.82090 * 16 15 14 45 45 H 1.09007 * 109.47317 * 304.82331 * 16 15 14 46 46 H 1.09007 * 109.47162 * 309.99904 * 17 15 14 47 47 H 1.08996 * 109.47652 * 69.99909 * 17 15 14 48 48 H 0.97007 * 120.00362 * 180.02562 * 21 20 18 49 49 H 1.07997 * 119.96027 * 179.97438 * 26 7 6 50 50 H 1.07998 * 120.03214 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 6 3.8855 1.5116 0.0008 5 6 4.4421 0.2382 0.0071 6 6 5.8145 0.0863 0.0028 7 6 6.6351 1.1997 0.0025 8 6 8.1324 1.0298 0.0036 9 7 8.6180 0.9752 1.3890 10 6 10.0770 0.8090 1.4292 11 6 10.5442 0.7559 2.8853 12 1 10.0687 -0.0857 3.3889 13 8 10.1847 1.9712 3.5455 14 6 12.0639 0.5835 2.9272 15 7 12.5112 0.5213 4.3251 16 6 13.9440 0.8268 4.4334 17 6 12.2058 -0.7876 4.9178 18 6 12.4498 -0.7353 6.4041 19 1 12.7974 0.1788 6.8623 20 6 12.2303 -1.8546 7.1785 21 7 11.8075 -2.9678 6.6204 22 14 12.5335 -1.7899 9.0207 23 1 11.2881 -1.3715 9.7129 24 1 12.9400 -3.1343 9.5029 25 1 13.6132 -0.8126 9.3106 26 6 6.0848 2.4685 0.0016 27 6 4.7131 2.6280 0.0015 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8019 -0.6316 0.0111 34 1 6.2477 -0.9030 0.0038 35 1 8.3935 0.1043 -0.5097 36 1 8.5942 1.8729 -0.5102 37 1 8.1565 0.2413 1.9052 38 1 10.3512 -0.1181 0.9260 39 1 10.5525 1.6504 0.9253 40 1 10.5731 2.7634 3.1500 41 1 12.3391 -0.3393 2.4163 42 1 12.5395 1.4294 2.4309 43 1 14.1192 1.8593 4.1311 44 1 14.2676 0.6904 5.4653 45 1 14.5084 0.1574 3.7841 46 1 11.1615 -1.0369 4.7297 47 1 12.8469 -1.5474 4.4709 48 1 11.6527 -3.7553 7.1653 49 1 6.7286 3.3356 0.0017 50 1 4.2842 3.6191 0.0012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905410738.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:20 Heat of formation + Delta-G solvation = -49.690704 kcal Electronic energy + Delta-G solvation = -25876.637081 eV Core-core repulsion = 22221.584421 eV Total energy + Delta-G solvation = -3655.052660 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.30431 -39.42377 -37.41648 -36.13756 -34.59908 -33.91419 -32.77033 -31.90359 -30.74063 -29.30313 -27.61675 -26.00314 -24.97498 -24.54909 -23.26068 -22.81027 -22.29185 -21.62261 -18.60276 -18.56910 -17.74814 -17.06581 -16.89474 -16.73972 -16.37239 -16.13978 -15.86987 -15.84155 -15.75875 -15.45165 -15.06714 -14.92958 -14.72277 -14.43034 -14.12998 -13.94380 -13.83008 -13.41816 -13.27042 -13.13656 -12.95591 -12.79037 -12.74810 -12.55467 -12.51793 -12.40966 -12.30168 -12.15670 -12.12531 -11.87450 -11.50518 -11.31655 -11.15506 -10.73999 -10.61024 -10.54417 -9.95544 -9.34986 -8.92633 -8.37713 -8.20955 -6.30006 0.15981 0.40072 0.52876 1.39537 1.42052 1.43274 1.52422 2.39976 2.59526 3.08346 3.12546 3.52977 3.75332 3.81001 3.89772 3.93541 3.95438 3.98228 3.99791 4.19888 4.33990 4.38121 4.40643 4.45206 4.49900 4.56365 4.62315 4.64062 4.69593 4.78307 4.79390 4.82150 4.83972 4.85465 5.05993 5.09164 5.13617 5.18390 5.24948 5.25766 5.30447 5.31512 5.62899 5.64951 5.90726 6.03046 6.08151 6.30996 6.36459 6.66719 6.86055 7.17478 7.39206 8.90076 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012934 B = 0.001867 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.249164 B =14993.187656 C =16445.853085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 S -0.149 6.149 4 C -0.095 4.095 5 C -0.141 4.141 6 C -0.102 4.102 7 C -0.092 4.092 8 C 0.103 3.897 9 N -0.682 5.682 10 C 0.042 3.958 11 C 0.126 3.874 12 H 0.057 0.943 13 O -0.552 6.552 14 C 0.027 3.973 15 N -0.542 5.542 16 C 0.039 3.961 17 C 0.210 3.790 18 C -0.522 4.522 19 H 0.061 0.939 20 C -0.001 4.001 21 N -0.935 5.935 22 Si 0.969 3.031 23 H -0.275 1.275 24 H -0.281 1.281 25 H -0.264 1.264 26 C -0.083 4.083 27 C -0.114 4.114 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.045 0.955 36 H 0.092 0.908 37 H 0.337 0.663 38 H 0.041 0.959 39 H 0.097 0.903 40 H 0.378 0.622 41 H 0.027 0.973 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.053 0.947 45 H 0.012 0.988 46 H 0.003 0.997 47 H -0.041 1.041 48 H 0.264 0.736 49 H 0.141 0.859 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.453 8.475 -20.281 27.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.253 4.253 3 S 0.093 5.907 4 C -0.208 4.208 5 C -0.164 4.164 6 C -0.122 4.122 7 C -0.095 4.095 8 C -0.025 4.025 9 N -0.313 5.313 10 C -0.087 4.087 11 C 0.066 3.934 12 H 0.075 0.925 13 O -0.357 6.357 14 C -0.102 4.102 15 N -0.266 5.266 16 C -0.109 4.109 17 C 0.084 3.916 18 C -0.561 4.561 19 H 0.079 0.921 20 C -0.199 4.199 21 N -0.575 5.575 22 Si 0.793 3.207 23 H -0.201 1.201 24 H -0.206 1.206 25 H -0.188 1.188 26 C -0.103 4.103 27 C -0.137 4.137 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.154 0.846 38 H 0.059 0.941 39 H 0.115 0.885 40 H 0.225 0.775 41 H 0.045 0.955 42 H 0.116 0.884 43 H 0.100 0.900 44 H 0.072 0.928 45 H 0.031 0.969 46 H 0.021 0.979 47 H -0.023 1.023 48 H 0.072 0.928 49 H 0.158 0.842 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.827 9.897 -19.540 28.242 hybrid contribution 1.749 -2.848 -0.009 3.342 sum -16.078 7.050 -19.550 26.275 Atomic orbital electron populations 1.21547 0.90551 1.04113 1.03217 1.23701 1.01389 0.94013 1.06160 1.85540 0.97794 1.14708 1.92649 1.21879 0.97158 0.96795 1.04956 1.21309 0.95990 0.95868 1.03250 1.21183 0.93085 0.99099 0.98839 1.19945 0.95551 0.93406 1.00615 1.20895 0.90293 1.01827 0.89501 1.60425 1.04576 1.53334 1.12975 1.22544 0.88693 1.01631 0.95880 1.21649 0.92543 0.87625 0.91628 0.92538 1.86638 1.74549 1.15800 1.58712 1.22797 0.96771 1.00991 0.89686 1.61923 1.16855 1.31917 1.15922 1.22245 0.87431 1.00123 1.01107 1.19367 0.93799 0.84398 0.94081 1.21492 1.44035 0.97105 0.93442 0.92123 1.25920 0.95048 0.94937 1.03963 1.70079 1.47445 1.02411 1.37597 0.85393 0.78753 0.77496 0.79047 1.20085 1.20598 1.18774 1.21159 0.94257 0.97539 0.97376 1.20964 0.93348 0.97805 1.01603 0.91807 0.91447 0.88887 0.88585 0.89137 0.84599 0.84812 0.93715 0.88987 0.84554 0.94065 0.88503 0.77464 0.95487 0.88442 0.90010 0.92805 0.96940 0.97920 1.02348 0.92751 0.84166 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.92 71.98 0.71 -0.47 16 2 C -0.10 -1.25 5.05 71.98 0.36 -0.88 16 3 S -0.15 -2.66 21.92 -56.49 -1.24 -3.90 16 4 C -0.10 -1.94 6.11 22.62 0.14 -1.80 16 5 C -0.14 -2.68 9.36 22.41 0.21 -2.47 16 6 C -0.10 -1.96 9.69 22.25 0.22 -1.74 16 7 C -0.09 -1.82 5.40 -19.83 -0.11 -1.93 16 8 C 0.10 1.87 5.81 85.56 0.50 2.37 16 9 N -0.68 -15.83 6.36 -517.94 -3.29 -19.12 16 10 C 0.04 0.97 5.35 86.31 0.46 1.43 16 11 C 0.13 4.05 3.24 30.60 0.10 4.15 16 12 H 0.06 2.29 6.78 -2.39 -0.02 2.27 16 13 O -0.55 -18.74 13.08 -148.98 -1.95 -20.69 16 14 C 0.03 0.89 4.66 86.31 0.40 1.29 16 15 N -0.54 -23.50 4.56 -927.02 -4.22 -27.72 16 16 C 0.04 1.49 9.37 127.69 1.20 2.68 16 17 C 0.21 11.43 4.55 85.56 0.39 11.82 16 18 C -0.52 -30.56 8.39 25.60 0.21 -30.35 16 19 H 0.06 3.50 7.16 -2.91 -0.02 3.48 16 20 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 21 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 22 Si 0.97 45.48 29.54 68.60 2.03 47.51 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 25 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 26 C -0.08 -1.62 9.69 22.25 0.22 -1.41 16 27 C -0.11 -2.29 9.79 22.41 0.22 -2.07 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.10 0.99 7.76 -2.39 -0.02 0.97 16 32 H 0.09 1.07 7.74 -2.39 -0.02 1.05 16 33 H 0.14 2.06 5.88 -2.91 -0.02 2.04 16 34 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.04 0.75 8.08 -2.39 -0.02 0.73 16 36 H 0.09 1.45 8.08 -2.39 -0.02 1.43 16 37 H 0.34 8.72 8.72 -89.69 -0.78 7.94 16 38 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.38 9.49 9.04 -74.06 -0.67 8.82 16 41 H 0.03 0.93 8.00 -2.38 -0.02 0.91 16 42 H 0.10 2.53 7.94 -2.39 -0.02 2.51 16 43 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 44 H 0.05 2.28 6.66 -2.39 -0.02 2.26 16 45 H 0.01 0.45 8.13 -2.38 -0.02 0.43 16 46 H 0.00 0.16 6.63 -2.38 -0.02 0.15 16 47 H -0.04 -2.41 8.12 -2.39 -0.02 -2.43 16 48 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 49 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 50 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -71.26 417.97 -3.23 -74.49 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.53 Total: 25.39 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: 5.69 Total: -18.97 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -7.23 Total: -103.83 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -1.95 Total: -20.69 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Atomic # 16 Polarization: -2.66 SS G_CDS: -1.24 Total: -3.90 kcal Total: -71.26 -3.23 -74.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905410738.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.800 kcal (2) G-P(sol) polarization free energy of solvation -71.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds