Wall clock time and date at job start Tue Mar 31 2020 21:58:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86795 * 120.00331 * 2 1
4 4 H 1.48493 * 109.47199 * 239.99787 * 3 2 1
5 5 H 1.48494 * 109.46901 * 359.97438 * 3 2 1
6 6 H 1.48497 * 109.47258 * 119.99740 * 3 2 1
7 7 C 1.38818 * 120.00041 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00505 * 194.58244 * 7 2 1
9 9 N 1.36943 * 119.99435 * 14.58165 * 7 2 1
10 10 C 1.47602 * 118.64569 * 27.78191 * 9 7 2
11 11 C 1.53947 * 112.14435 * 137.86118 * 10 9 7
12 12 C 1.50878 * 110.09423 * 319.43920 * 11 10 9
13 13 C 1.52567 * 109.34914 * 91.88652 * 12 11 10
14 14 C 1.47049 * 114.29427 * 274.93788 * 13 12 11
15 15 C 1.44581 * 118.63870 * 207.75677 * 9 7 2
16 16 H 1.09003 * 109.44918 * 150.69915 * 15 9 7
17 17 C 1.53006 * 109.45023 * 30.76040 * 15 9 7
18 18 N 1.46507 * 109.47100 * 54.94426 * 17 15 9
19 19 C 1.34769 * 119.99896 * 180.02562 * 18 17 15
20 20 O 1.21606 * 120.00303 * 359.97438 * 19 18 17
21 21 C 1.47435 * 119.99632 * 179.97438 * 19 18 17
22 22 C 1.41288 * 126.41772 * 359.68955 * 21 19 18
23 23 N 1.30447 * 108.02131 * 179.85619 * 22 21 19
24 24 N 1.39929 * 108.89680 * 0.39993 * 23 22 21
25 25 C 1.46504 * 125.75183 * 179.73650 * 24 23 22
26 26 C 1.53003 * 109.47421 * 305.00572 * 25 24 23
27 27 F 1.39899 * 109.47299 * 180.02562 * 26 25 24
28 28 C 1.34258 * 108.49762 * 359.74335 * 24 23 22
29 29 H 0.97001 * 119.99850 * 0.02562 * 1 2 3
30 30 H 1.08994 * 108.94719 * 258.54972 * 10 9 7
31 31 H 1.08997 * 108.94495 * 17.17831 * 10 9 7
32 32 H 1.09002 * 109.36683 * 79.63286 * 11 10 9
33 33 H 1.08996 * 109.36772 * 199.37622 * 11 10 9
34 34 H 1.09006 * 109.49389 * 211.84911 * 12 11 10
35 35 H 1.08997 * 109.49590 * 331.92413 * 12 11 10
36 36 H 1.09003 * 108.51228 * 36.23169 * 13 12 11
37 37 H 1.09001 * 108.51223 * 153.87244 * 13 12 11
38 38 H 1.08997 * 109.37000 * 302.59163 * 14 13 12
39 39 H 1.09002 * 109.28169 * 183.11529 * 14 13 12
40 40 H 1.08998 * 109.46933 * 294.94640 * 17 15 9
41 41 H 1.08993 * 109.47371 * 174.94453 * 17 15 9
42 42 H 0.97001 * 119.99867 * 0.27344 * 18 17 15
43 43 H 1.08001 * 125.98234 * 359.97438 * 22 21 19
44 44 H 1.09002 * 109.46879 * 65.00503 * 25 24 23
45 45 H 1.09002 * 109.47307 * 185.00522 * 25 24 23
46 46 H 1.09002 * 109.46990 * 300.00389 * 26 25 24
47 47 H 1.09002 * 109.46920 * 59.99714 * 26 25 24
48 48 H 1.07998 * 126.29476 * 179.97438 * 28 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6176 0.0000
4 1 3.1040 1.6962 -1.2124
5 1 1.2853 2.7463 -0.0006
6 1 3.1039 1.6963 1.2125
7 6 2.0103 -1.2022 0.0005
8 1 3.0642 -1.2172 0.2360
9 7 1.3585 -2.3691 -0.2975
10 6 0.1769 -2.3141 -1.1804
11 6 0.1659 -3.4610 -2.2072
12 6 1.5574 -3.6901 -2.7436
13 6 2.2578 -4.7481 -1.8964
14 6 2.9096 -4.2215 -0.6880
15 6 1.8566 -3.6043 0.2652
16 1 1.0304 -4.3033 0.3949
17 6 2.5025 -3.3215 1.6231
18 7 1.5417 -2.6304 2.4865
19 6 1.8931 -2.2779 3.7389
20 8 3.0076 -2.5340 4.1525
21 6 0.9263 -1.5819 4.6075
22 6 -0.3944 -1.2139 4.2663
23 7 -0.9281 -0.6221 5.2991
24 7 0.0147 -0.5756 6.3320
25 6 -0.1951 0.0143 7.6565
26 6 -0.6516 1.4664 7.5017
27 9 -0.8514 2.0299 8.7665
28 6 1.1441 -1.1624 5.9046
29 1 -0.4850 0.8401 -0.0004
30 1 -0.7240 -2.3766 -0.5702
31 1 0.1767 -1.3628 -1.7124
32 1 -0.1912 -4.3723 -1.7274
33 1 -0.4990 -3.2021 -3.0312
34 1 1.4972 -4.0326 -3.7767
35 1 2.1215 -2.7584 -2.7013
36 1 1.5219 -5.4942 -1.5966
37 1 3.0146 -5.2372 -2.5098
38 1 3.6323 -3.4564 -0.9714
39 1 3.4282 -5.0323 -0.1764
40 1 3.3824 -2.6936 1.4832
41 1 2.7976 -4.2621 2.0880
42 1 0.6514 -2.4296 2.1579
43 1 -0.8780 -1.3931 3.3173
44 1 -0.9590 -0.5518 8.1895
45 1 0.7379 -0.0152 8.2193
46 1 0.1123 2.0326 6.9686
47 1 -1.5846 1.4959 6.9389
48 1 2.0555 -1.2837 6.4712
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000968923078.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:58:55
Heat of formation + Delta-G solvation = 5.031475 kcal
Electronic energy + Delta-G solvation = -30445.183634 eV
Core-core repulsion = 26258.583481 eV
Total energy + Delta-G solvation = -4186.600153 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.186 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-48.02351 -41.19954 -38.84648 -37.80575 -34.42057 -34.26429 -33.43392 -31.69898
-30.67783 -30.30917 -29.16250 -26.90105 -25.62527 -23.98354 -23.45097 -22.83956
-21.53684 -20.63978 -19.90532 -19.30874 -19.13662 -17.84671 -16.71530 -16.55053
-16.00272 -15.62829 -15.55149 -15.24296 -14.90217 -14.66440 -14.56169 -14.19874
-14.03541 -13.80426 -13.54684 -13.31983 -13.13604 -12.77908 -12.68188 -12.55291
-12.04788 -11.91658 -11.79422 -11.44715 -11.29980 -11.21538 -11.06084 -10.81670
-10.78990 -10.60315 -10.20183 -10.00971 -9.97059 -9.68327 -9.57286 -9.52777
-9.49634 -9.22114 -8.58813 -8.40031 -8.04870 -6.68869 -5.81106 -3.24836
1.68643 2.24441 2.48304 3.38104 3.42730 3.46538 3.87412 4.03022
4.13888 4.28824 4.49177 4.64803 4.69593 4.85442 4.95450 5.19078
5.22261 5.36433 5.41997 5.45694 5.51040 5.53436 5.63250 5.66640
5.89833 6.00055 6.06732 6.11996 6.18240 6.35818 6.39954 6.58837
6.62121 6.65044 6.67065 6.73118 6.78110 6.83000 6.85956 7.01510
7.12556 7.33414 7.42599 7.64962 7.68245 7.83848 8.42577 8.44724
9.03102 9.22206 9.86512 10.31378 11.25715
Molecular weight = 338.19amu
Principal moments of inertia in cm(-1)
A = 0.013666 B = 0.003350 C = 0.003029
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2048.395548 B = 8355.201994 C = 9240.747148
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.903 5.903
2 C 0.015 3.985
3 Si 0.890 3.110
4 H -0.286 1.286
5 H -0.292 1.292
6 H -0.284 1.284
7 C -0.248 4.248
8 H 0.062 0.938
9 N -0.583 5.583
10 C 0.180 3.820
11 C -0.143 4.143
12 C -0.106 4.106
13 C -0.101 4.101
14 C -0.136 4.136
15 C 0.173 3.827
16 H 0.044 0.956
17 C 0.132 3.868
18 N -0.684 5.684
19 C 0.589 3.411
20 O -0.575 6.575
21 C -0.273 4.273
22 C 0.101 3.899
23 N -0.304 5.304
24 N -0.374 5.374
25 C 0.107 3.893
26 C 0.051 3.949
27 F -0.210 7.210
28 C 0.118 3.882
29 H 0.253 0.747
30 H 0.024 0.976
31 H 0.074 0.926
32 H 0.043 0.957
33 H 0.048 0.952
34 H 0.038 0.962
35 H 0.074 0.926
36 H 0.046 0.954
37 H 0.040 0.960
38 H 0.063 0.937
39 H 0.048 0.952
40 H 0.067 0.933
41 H 0.049 0.951
42 H 0.410 0.590
43 H 0.197 0.803
44 H 0.097 0.903
45 H 0.108 0.892
46 H 0.083 0.917
47 H 0.093 0.907
48 H 0.185 0.815
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.592 -4.313 8.213 9.412
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.547 5.547
2 C -0.184 4.184
3 Si 0.721 3.279
4 H -0.212 1.212
5 H -0.218 1.218
6 H -0.211 1.211
7 C -0.377 4.377
8 H 0.080 0.920
9 N -0.305 5.305
10 C 0.056 3.944
11 C -0.182 4.182
12 C -0.144 4.144
13 C -0.138 4.138
14 C -0.177 4.177
15 C 0.064 3.936
16 H 0.062 0.938
17 C 0.007 3.993
18 N -0.332 5.332
19 C 0.375 3.625
20 O -0.457 6.457
21 C -0.288 4.288
22 C -0.087 4.087
23 N -0.124 5.124
24 N -0.154 5.154
25 C -0.016 4.016
26 C -0.005 4.005
27 F -0.191 7.191
28 C -0.032 4.032
29 H 0.063 0.937
30 H 0.042 0.958
31 H 0.093 0.907
32 H 0.062 0.938
33 H 0.067 0.933
34 H 0.057 0.943
35 H 0.092 0.908
36 H 0.065 0.935
37 H 0.058 0.942
38 H 0.082 0.918
39 H 0.067 0.933
40 H 0.086 0.914
41 H 0.068 0.932
42 H 0.246 0.754
43 H 0.213 0.787
44 H 0.116 0.884
45 H 0.126 0.874
46 H 0.101 0.899
47 H 0.111 0.889
48 H 0.202 0.798
Dipole moment (debyes) X Y Z Total
from point charges -2.049 -3.718 9.104 10.045
hybrid contribution 0.820 0.790 -0.573 1.275
sum -1.229 -2.928 8.531 9.103
Atomic orbital electron populations
1.69995 1.04887 1.25413 1.54434 1.24863 0.95129 0.97756 1.00659
0.86555 0.79121 0.84146 0.78100 1.21228 1.21849 1.21066 1.18986
0.92009 0.84512 1.42234 0.92006 1.43717 1.32627 1.01695 1.52495
1.21006 0.88161 0.95495 0.89760 1.22071 0.96092 1.00515 0.99535
1.20948 0.97102 0.99823 0.96542 1.20281 0.98885 0.97914 0.96734
1.21369 0.99591 0.99748 0.97024 1.20511 0.93933 0.89430 0.89694
0.93755 1.21459 0.92829 0.95105 0.89926 1.45436 1.17927 1.57961
1.11912 1.17117 0.85749 0.78062 0.81532 1.90694 1.21878 1.57846
1.75314 1.20438 0.97107 1.15257 0.95973 1.24281 0.92909 0.93879
0.97599 1.77150 1.14224 1.24621 0.96355 1.48199 1.09984 1.45147
1.12034 1.22191 1.04739 0.94170 0.80455 1.22195 1.04560 0.92382
0.81334 1.92785 1.96827 1.86172 1.43312 1.22901 0.91217 0.93918
0.95129 0.93725 0.95788 0.90737 0.93821 0.93326 0.94274 0.90780
0.93525 0.94169 0.91834 0.93335 0.91438 0.93246 0.75393 0.78679
0.88431 0.87386 0.89896 0.88871 0.79757
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -23.02 11.03 55.49 0.61 -22.41 16
2 C 0.01 0.36 4.89 -17.43 -0.09 0.28 16
3 Si 0.89 21.09 29.58 -169.99 -5.03 16.07 16
4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
7 C -0.25 -5.94 7.65 -15.05 -0.12 -6.05 16
8 H 0.06 1.56 6.72 -52.49 -0.35 1.21 16
9 N -0.58 -12.26 1.78 -164.46 -0.29 -12.55 16
10 C 0.18 3.78 4.66 -2.94 -0.01 3.77 16
11 C -0.14 -2.48 5.71 -27.30 -0.16 -2.63 16
12 C -0.11 -1.77 5.51 -28.02 -0.15 -1.92 16
13 C -0.10 -1.54 5.15 -29.81 -0.15 -1.70 16
14 C -0.14 -2.24 5.06 -28.60 -0.14 -2.39 16
15 C 0.17 3.15 2.19 -67.97 -0.15 3.01 16
16 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16
17 C 0.13 2.47 4.53 -4.04 -0.02 2.45 16
18 N -0.68 -13.09 4.71 -61.38 -0.29 -13.38 16
19 C 0.59 11.48 7.81 -12.52 -0.10 11.38 16
20 O -0.58 -12.56 16.90 5.27 0.09 -12.47 16
21 C -0.27 -4.61 6.13 -105.06 -0.64 -5.26 16
22 C 0.10 1.65 11.50 -16.98 -0.20 1.45 16
23 N -0.30 -4.67 12.33 30.86 0.38 -4.29 16
24 N -0.37 -4.76 3.65 -60.80 -0.22 -4.98 16
25 C 0.11 0.93 6.94 -4.04 -0.03 0.90 16
26 C 0.05 0.47 7.73 37.16 0.29 0.76 16
27 F -0.21 -2.14 17.36 2.25 0.04 -2.10 16
28 C 0.12 1.64 11.25 -16.56 -0.19 1.46 16
29 H 0.25 6.51 8.31 -40.82 -0.34 6.17 16
30 H 0.02 0.54 8.02 -51.93 -0.42 0.12 16
31 H 0.07 1.79 6.39 -51.93 -0.33 1.46 16
32 H 0.04 0.72 7.32 -51.93 -0.38 0.34 16
33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16
35 H 0.07 1.42 7.48 -51.93 -0.39 1.03 16
36 H 0.05 0.69 7.36 -51.93 -0.38 0.30 16
37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16
38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
39 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16
40 H 0.07 1.42 6.83 -51.93 -0.35 1.06 16
41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16
42 H 0.41 7.97 7.04 -40.82 -0.29 7.68 16
43 H 0.20 3.11 7.50 -52.49 -0.39 2.72 16
44 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16
45 H 0.11 0.66 8.06 -51.93 -0.42 0.25 16
46 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16
47 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16
48 H 0.19 2.09 8.06 -52.49 -0.42 1.67 16
LS Contribution 385.75 15.07 5.81 5.81
Total: -1.00 -28.50 385.75 -8.24 -36.73
By element:
Atomic # 1 Polarization: 15.54 SS G_CDS: -7.49 Total: 8.06 kcal
Atomic # 6 Polarization: 7.35 SS G_CDS: -1.85 Total: 5.50 kcal
Atomic # 7 Polarization: -57.79 SS G_CDS: 0.19 Total: -57.60 kcal
Atomic # 8 Polarization: -12.56 SS G_CDS: 0.09 Total: -12.47 kcal
Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal
Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.07 kcal
Total LS contribution 5.81 Total: 5.81 kcal
Total: -28.50 -8.24 -36.73 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000968923078.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.766 kcal
(2) G-P(sol) polarization free energy of solvation -28.499 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.268 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.735 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.031 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds