Wall clock time and date at job start Tue Mar 31 2020 21:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00331 * 2 1 4 4 H 1.48493 * 109.47199 * 239.99787 * 3 2 1 5 5 H 1.48494 * 109.46901 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47258 * 119.99740 * 3 2 1 7 7 C 1.38818 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00505 * 194.58244 * 7 2 1 9 9 N 1.36943 * 119.99435 * 14.58165 * 7 2 1 10 10 C 1.47602 * 118.64569 * 27.78191 * 9 7 2 11 11 C 1.53947 * 112.14435 * 137.86118 * 10 9 7 12 12 C 1.50878 * 110.09423 * 319.43920 * 11 10 9 13 13 C 1.52567 * 109.34914 * 91.88652 * 12 11 10 14 14 C 1.47049 * 114.29427 * 274.93788 * 13 12 11 15 15 C 1.44581 * 118.63870 * 207.75677 * 9 7 2 16 16 H 1.09003 * 109.44918 * 150.69915 * 15 9 7 17 17 C 1.53006 * 109.45023 * 30.76040 * 15 9 7 18 18 N 1.46507 * 109.47100 * 54.94426 * 17 15 9 19 19 C 1.34769 * 119.99896 * 180.02562 * 18 17 15 20 20 O 1.21606 * 120.00303 * 359.97438 * 19 18 17 21 21 C 1.47435 * 119.99632 * 179.97438 * 19 18 17 22 22 C 1.41288 * 126.41772 * 359.68955 * 21 19 18 23 23 N 1.30447 * 108.02131 * 179.85619 * 22 21 19 24 24 N 1.39929 * 108.89680 * 0.39993 * 23 22 21 25 25 C 1.46504 * 125.75183 * 179.73650 * 24 23 22 26 26 C 1.53003 * 109.47421 * 305.00572 * 25 24 23 27 27 F 1.39899 * 109.47299 * 180.02562 * 26 25 24 28 28 C 1.34258 * 108.49762 * 359.74335 * 24 23 22 29 29 H 0.97001 * 119.99850 * 0.02562 * 1 2 3 30 30 H 1.08994 * 108.94719 * 258.54972 * 10 9 7 31 31 H 1.08997 * 108.94495 * 17.17831 * 10 9 7 32 32 H 1.09002 * 109.36683 * 79.63286 * 11 10 9 33 33 H 1.08996 * 109.36772 * 199.37622 * 11 10 9 34 34 H 1.09006 * 109.49389 * 211.84911 * 12 11 10 35 35 H 1.08997 * 109.49590 * 331.92413 * 12 11 10 36 36 H 1.09003 * 108.51228 * 36.23169 * 13 12 11 37 37 H 1.09001 * 108.51223 * 153.87244 * 13 12 11 38 38 H 1.08997 * 109.37000 * 302.59163 * 14 13 12 39 39 H 1.09002 * 109.28169 * 183.11529 * 14 13 12 40 40 H 1.08998 * 109.46933 * 294.94640 * 17 15 9 41 41 H 1.08993 * 109.47371 * 174.94453 * 17 15 9 42 42 H 0.97001 * 119.99867 * 0.27344 * 18 17 15 43 43 H 1.08001 * 125.98234 * 359.97438 * 22 21 19 44 44 H 1.09002 * 109.46879 * 65.00503 * 25 24 23 45 45 H 1.09002 * 109.47307 * 185.00522 * 25 24 23 46 46 H 1.09002 * 109.46990 * 300.00389 * 26 25 24 47 47 H 1.09002 * 109.46920 * 59.99714 * 26 25 24 48 48 H 1.07998 * 126.29476 * 179.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6962 -1.2124 5 1 1.2853 2.7463 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0642 -1.2172 0.2360 9 7 1.3585 -2.3691 -0.2975 10 6 0.1769 -2.3141 -1.1804 11 6 0.1659 -3.4610 -2.2072 12 6 1.5574 -3.6901 -2.7436 13 6 2.2578 -4.7481 -1.8964 14 6 2.9096 -4.2215 -0.6880 15 6 1.8566 -3.6043 0.2652 16 1 1.0304 -4.3033 0.3949 17 6 2.5025 -3.3215 1.6231 18 7 1.5417 -2.6304 2.4865 19 6 1.8931 -2.2779 3.7389 20 8 3.0076 -2.5340 4.1525 21 6 0.9263 -1.5819 4.6075 22 6 -0.3944 -1.2139 4.2663 23 7 -0.9281 -0.6221 5.2991 24 7 0.0147 -0.5756 6.3320 25 6 -0.1951 0.0143 7.6565 26 6 -0.6516 1.4664 7.5017 27 9 -0.8514 2.0299 8.7665 28 6 1.1441 -1.1624 5.9046 29 1 -0.4850 0.8401 -0.0004 30 1 -0.7240 -2.3766 -0.5702 31 1 0.1767 -1.3628 -1.7124 32 1 -0.1912 -4.3723 -1.7274 33 1 -0.4990 -3.2021 -3.0312 34 1 1.4972 -4.0326 -3.7767 35 1 2.1215 -2.7584 -2.7013 36 1 1.5219 -5.4942 -1.5966 37 1 3.0146 -5.2372 -2.5098 38 1 3.6323 -3.4564 -0.9714 39 1 3.4282 -5.0323 -0.1764 40 1 3.3824 -2.6936 1.4832 41 1 2.7976 -4.2621 2.0880 42 1 0.6514 -2.4296 2.1579 43 1 -0.8780 -1.3931 3.3173 44 1 -0.9590 -0.5518 8.1895 45 1 0.7379 -0.0152 8.2193 46 1 0.1123 2.0326 6.9686 47 1 -1.5846 1.4959 6.9389 48 1 2.0555 -1.2837 6.4712 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968923078.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:54 Heat of formation + Delta-G solvation = -10.484175 kcal Electronic energy + Delta-G solvation = -30445.856443 eV Core-core repulsion = 26258.583481 eV Total energy + Delta-G solvation = -4187.272962 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.80735 -42.36601 -40.36186 -39.31555 -35.91351 -35.26399 -35.11517 -33.16927 -32.41042 -31.47088 -30.25903 -28.45422 -27.19325 -25.16710 -24.89836 -24.16627 -22.93259 -21.71409 -21.33566 -20.73657 -20.65998 -19.09516 -18.01209 -17.49088 -17.32363 -17.11023 -16.67142 -16.60763 -16.18308 -16.06421 -15.89682 -15.68846 -15.37704 -15.16593 -14.91651 -14.78912 -14.35950 -14.19937 -13.92360 -13.68808 -13.62461 -13.32847 -13.10509 -12.84388 -12.78133 -12.68265 -12.61012 -12.37332 -12.22225 -11.97427 -11.81006 -11.48836 -11.35945 -11.27772 -11.15609 -11.00082 -10.71807 -10.60121 -10.29840 -9.92524 -9.49620 -8.49109 -7.74339 -5.16204 0.53271 1.16528 1.27363 1.43110 1.46996 1.49969 2.50581 2.57904 2.69888 3.15879 3.41121 3.57251 3.66346 3.76284 3.80390 3.95057 4.08911 4.14892 4.16503 4.19576 4.27639 4.32378 4.47623 4.53584 4.56061 4.66788 4.71619 4.75852 4.77374 4.93488 5.05622 5.14116 5.18434 5.31172 5.31777 5.38271 5.43223 5.47433 5.60433 5.72132 5.77216 5.81558 5.81771 5.86844 5.96890 6.46522 6.52665 6.89719 7.32787 7.50542 8.06803 8.44784 9.28832 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.013666 B = 0.003350 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.395548 B = 8355.201994 C = 9240.747148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.021 4.021 3 Si 0.926 3.074 4 H -0.287 1.287 5 H -0.298 1.298 6 H -0.294 1.294 7 C -0.230 4.230 8 H 0.047 0.953 9 N -0.587 5.587 10 C 0.189 3.811 11 C -0.133 4.133 12 C -0.103 4.103 13 C -0.100 4.100 14 C -0.129 4.129 15 C 0.173 3.827 16 H 0.057 0.943 17 C 0.135 3.865 18 N -0.687 5.687 19 C 0.586 3.414 20 O -0.604 6.604 21 C -0.308 4.308 22 C 0.094 3.906 23 N -0.317 5.317 24 N -0.361 5.361 25 C 0.101 3.899 26 C 0.056 3.944 27 F -0.213 7.213 28 C 0.138 3.862 29 H 0.244 0.756 30 H 0.004 0.996 31 H 0.039 0.961 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.041 0.959 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.041 0.959 39 H 0.073 0.927 40 H 0.041 0.959 41 H 0.066 0.934 42 H 0.407 0.593 43 H 0.189 0.811 44 H 0.114 0.886 45 H 0.142 0.858 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.373 -5.868 9.017 10.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.218 4.218 3 Si 0.758 3.242 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.221 1.221 7 C -0.361 4.361 8 H 0.065 0.935 9 N -0.309 5.309 10 C 0.065 3.935 11 C -0.172 4.172 12 C -0.141 4.141 13 C -0.137 4.137 14 C -0.169 4.169 15 C 0.066 3.934 16 H 0.075 0.925 17 C 0.010 3.990 18 N -0.334 5.334 19 C 0.374 3.626 20 O -0.489 6.489 21 C -0.322 4.322 22 C -0.093 4.093 23 N -0.137 5.137 24 N -0.140 5.140 25 C -0.020 4.020 26 C 0.000 4.000 27 F -0.194 7.194 28 C -0.014 4.014 29 H 0.054 0.946 30 H 0.022 0.978 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.243 0.757 43 H 0.205 0.795 44 H 0.132 0.868 45 H 0.160 0.840 46 H 0.101 0.899 47 H 0.102 0.898 48 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -1.845 -5.281 9.906 11.377 hybrid contribution 0.766 1.280 -0.732 1.662 sum -1.079 -4.001 9.174 10.067 Atomic orbital electron populations 1.70081 1.05174 1.24816 1.56017 1.25163 0.95551 0.99020 1.02042 0.86003 0.78078 0.82836 0.77330 1.21423 1.22426 1.22139 1.18910 0.91320 0.85591 1.40260 0.93505 1.43755 1.32355 1.01889 1.52927 1.20785 0.87251 0.95571 0.89934 1.21943 0.97151 0.99335 0.98724 1.20908 0.96051 0.98913 0.98243 1.20265 0.99676 0.97660 0.96141 1.21282 0.98565 0.99755 0.97310 1.20675 0.94767 0.88327 0.89669 0.92502 1.21442 0.91887 0.95182 0.90470 1.45493 1.17747 1.58028 1.12096 1.17481 0.85808 0.77640 0.81646 1.90659 1.23108 1.59256 1.75855 1.20360 0.97097 1.17496 0.97271 1.24175 0.92914 0.94403 0.97831 1.77100 1.15148 1.24641 0.96803 1.48475 1.09008 1.43866 1.12615 1.22586 1.07233 0.93564 0.78595 1.22109 1.04160 0.92785 0.80961 1.92781 1.96841 1.86272 1.43554 1.23290 0.92039 0.91973 0.94114 0.94595 0.97754 0.94274 0.92178 0.92245 0.91995 0.93979 0.91988 0.92088 0.93985 0.90884 0.94099 0.91590 0.75698 0.79453 0.86763 0.83975 0.89935 0.89786 0.76864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.13 11.03 21.65 0.24 -47.89 16 2 C -0.02 -1.09 4.89 84.86 0.41 -0.68 16 3 Si 0.93 44.41 29.58 68.60 2.03 46.44 16 4 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 6 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 7 C -0.23 -11.29 7.65 84.03 0.64 -10.65 16 8 H 0.05 2.45 6.72 -2.91 -0.02 2.43 16 9 N -0.59 -24.89 1.78 -674.24 -1.20 -26.09 16 10 C 0.19 8.01 4.66 86.49 0.40 8.41 16 11 C -0.13 -4.37 5.71 30.22 0.17 -4.19 16 12 C -0.10 -3.22 5.51 29.76 0.16 -3.05 16 13 C -0.10 -2.75 5.15 28.60 0.15 -2.60 16 14 C -0.13 -3.98 5.06 29.38 0.15 -3.83 16 15 C 0.17 6.16 2.19 45.99 0.10 6.26 16 16 H 0.06 1.92 8.07 -2.39 -0.02 1.90 16 17 C 0.13 5.05 4.53 86.38 0.39 5.44 16 18 N -0.69 -26.66 4.71 -466.36 -2.19 -28.86 16 19 C 0.59 23.04 7.81 86.67 0.68 23.72 16 20 O -0.60 -26.44 16.90 -4.05 -0.07 -26.51 16 21 C -0.31 -10.34 6.13 -20.15 -0.12 -10.46 16 22 C 0.09 3.11 11.50 85.65 0.99 4.09 16 23 N -0.32 -9.54 12.33 -56.28 -0.69 -10.23 16 24 N -0.36 -8.48 3.65 -346.28 -1.26 -9.74 16 25 C 0.10 1.45 6.94 86.38 0.60 2.05 16 26 C 0.06 0.92 7.73 71.98 0.56 1.48 16 27 F -0.21 -3.93 17.36 44.97 0.78 -3.15 16 28 C 0.14 3.58 11.25 84.28 0.95 4.52 16 29 H 0.24 13.01 8.31 -92.71 -0.77 12.24 16 30 H 0.00 0.20 8.02 -2.39 -0.02 0.18 16 31 H 0.04 1.93 6.39 -2.39 -0.02 1.91 16 32 H 0.06 1.80 7.32 -2.39 -0.02 1.78 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.04 1.58 7.48 -2.39 -0.02 1.57 16 36 H 0.06 1.56 7.36 -2.39 -0.02 1.54 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.07 1.92 8.11 -2.39 -0.02 1.90 16 40 H 0.04 1.75 6.83 -2.39 -0.02 1.73 16 41 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 42 H 0.41 16.25 7.04 -92.71 -0.65 15.60 16 43 H 0.19 6.28 7.50 -2.91 -0.02 6.26 16 44 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.14 1.15 8.06 -2.39 -0.02 1.14 16 46 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.21 4.20 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -63.04 385.75 4.17 -58.87 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.32 Total: 26.65 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 6.23 Total: 20.51 kcal Atomic # 7 Polarization: -117.70 SS G_CDS: -5.11 Total: -122.81 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.07 Total: -26.51 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.78 Total: -3.15 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -63.04 4.17 -58.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968923078.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.388 kcal (2) G-P(sol) polarization free energy of solvation -63.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds