Wall clock time and date at job start Tue Mar 31 2020 21:58:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86795 * 120.00331 * 2 1
4 4 H 1.48493 * 109.47199 * 239.99787 * 3 2 1
5 5 H 1.48494 * 109.46901 * 359.97438 * 3 2 1
6 6 H 1.48497 * 109.47258 * 119.99740 * 3 2 1
7 7 C 1.38818 * 120.00041 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00505 * 194.58244 * 7 2 1
9 9 N 1.36943 * 119.99435 * 14.58165 * 7 2 1
10 10 C 1.47602 * 118.64569 * 27.78191 * 9 7 2
11 11 C 1.53947 * 112.14435 * 137.86118 * 10 9 7
12 12 C 1.50878 * 110.09423 * 319.43920 * 11 10 9
13 13 C 1.52567 * 109.34914 * 91.88652 * 12 11 10
14 14 C 1.47049 * 114.29427 * 274.93788 * 13 12 11
15 15 C 1.44581 * 118.63870 * 207.75677 * 9 7 2
16 16 H 1.09003 * 109.44918 * 150.69915 * 15 9 7
17 17 C 1.53006 * 109.45023 * 30.76040 * 15 9 7
18 18 N 1.46507 * 109.47100 * 54.94426 * 17 15 9
19 19 C 1.34769 * 119.99896 * 180.02562 * 18 17 15
20 20 O 1.21606 * 120.00303 * 359.97438 * 19 18 17
21 21 C 1.47435 * 119.99632 * 179.97438 * 19 18 17
22 22 C 1.41288 * 126.41772 * 359.68955 * 21 19 18
23 23 N 1.30447 * 108.02131 * 179.85619 * 22 21 19
24 24 N 1.39929 * 108.89680 * 0.39993 * 23 22 21
25 25 C 1.46504 * 125.75183 * 179.73650 * 24 23 22
26 26 C 1.53003 * 109.47421 * 305.00572 * 25 24 23
27 27 F 1.39899 * 109.47299 * 180.02562 * 26 25 24
28 28 C 1.34258 * 108.49762 * 359.74335 * 24 23 22
29 29 H 0.97001 * 119.99850 * 0.02562 * 1 2 3
30 30 H 1.08994 * 108.94719 * 258.54972 * 10 9 7
31 31 H 1.08997 * 108.94495 * 17.17831 * 10 9 7
32 32 H 1.09002 * 109.36683 * 79.63286 * 11 10 9
33 33 H 1.08996 * 109.36772 * 199.37622 * 11 10 9
34 34 H 1.09006 * 109.49389 * 211.84911 * 12 11 10
35 35 H 1.08997 * 109.49590 * 331.92413 * 12 11 10
36 36 H 1.09003 * 108.51228 * 36.23169 * 13 12 11
37 37 H 1.09001 * 108.51223 * 153.87244 * 13 12 11
38 38 H 1.08997 * 109.37000 * 302.59163 * 14 13 12
39 39 H 1.09002 * 109.28169 * 183.11529 * 14 13 12
40 40 H 1.08998 * 109.46933 * 294.94640 * 17 15 9
41 41 H 1.08993 * 109.47371 * 174.94453 * 17 15 9
42 42 H 0.97001 * 119.99867 * 0.27344 * 18 17 15
43 43 H 1.08001 * 125.98234 * 359.97438 * 22 21 19
44 44 H 1.09002 * 109.46879 * 65.00503 * 25 24 23
45 45 H 1.09002 * 109.47307 * 185.00522 * 25 24 23
46 46 H 1.09002 * 109.46990 * 300.00389 * 26 25 24
47 47 H 1.09002 * 109.46920 * 59.99714 * 26 25 24
48 48 H 1.07998 * 126.29476 * 179.97438 * 28 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6176 0.0000
4 1 3.1040 1.6962 -1.2124
5 1 1.2853 2.7463 -0.0006
6 1 3.1039 1.6963 1.2125
7 6 2.0103 -1.2022 0.0005
8 1 3.0642 -1.2172 0.2360
9 7 1.3585 -2.3691 -0.2975
10 6 0.1769 -2.3141 -1.1804
11 6 0.1659 -3.4610 -2.2072
12 6 1.5574 -3.6901 -2.7436
13 6 2.2578 -4.7481 -1.8964
14 6 2.9096 -4.2215 -0.6880
15 6 1.8566 -3.6043 0.2652
16 1 1.0304 -4.3033 0.3949
17 6 2.5025 -3.3215 1.6231
18 7 1.5417 -2.6304 2.4865
19 6 1.8931 -2.2779 3.7389
20 8 3.0076 -2.5340 4.1525
21 6 0.9263 -1.5819 4.6075
22 6 -0.3944 -1.2139 4.2663
23 7 -0.9281 -0.6221 5.2991
24 7 0.0147 -0.5756 6.3320
25 6 -0.1951 0.0143 7.6565
26 6 -0.6516 1.4664 7.5017
27 9 -0.8514 2.0299 8.7665
28 6 1.1441 -1.1624 5.9046
29 1 -0.4850 0.8401 -0.0004
30 1 -0.7240 -2.3766 -0.5702
31 1 0.1767 -1.3628 -1.7124
32 1 -0.1912 -4.3723 -1.7274
33 1 -0.4990 -3.2021 -3.0312
34 1 1.4972 -4.0326 -3.7767
35 1 2.1215 -2.7584 -2.7013
36 1 1.5219 -5.4942 -1.5966
37 1 3.0146 -5.2372 -2.5098
38 1 3.6323 -3.4564 -0.9714
39 1 3.4282 -5.0323 -0.1764
40 1 3.3824 -2.6936 1.4832
41 1 2.7976 -4.2621 2.0880
42 1 0.6514 -2.4296 2.1579
43 1 -0.8780 -1.3931 3.3173
44 1 -0.9590 -0.5518 8.1895
45 1 0.7379 -0.0152 8.2193
46 1 0.1123 2.0326 6.9686
47 1 -1.5846 1.4959 6.9389
48 1 2.0555 -1.2837 6.4712
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000968923078.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:58:54
Heat of formation + Delta-G solvation = -10.484175 kcal
Electronic energy + Delta-G solvation = -30445.856443 eV
Core-core repulsion = 26258.583481 eV
Total energy + Delta-G solvation = -4187.272962 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.186 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-48.80735 -42.36601 -40.36186 -39.31555 -35.91351 -35.26399 -35.11517 -33.16927
-32.41042 -31.47088 -30.25903 -28.45422 -27.19325 -25.16710 -24.89836 -24.16627
-22.93259 -21.71409 -21.33566 -20.73657 -20.65998 -19.09516 -18.01209 -17.49088
-17.32363 -17.11023 -16.67142 -16.60763 -16.18308 -16.06421 -15.89682 -15.68846
-15.37704 -15.16593 -14.91651 -14.78912 -14.35950 -14.19937 -13.92360 -13.68808
-13.62461 -13.32847 -13.10509 -12.84388 -12.78133 -12.68265 -12.61012 -12.37332
-12.22225 -11.97427 -11.81006 -11.48836 -11.35945 -11.27772 -11.15609 -11.00082
-10.71807 -10.60121 -10.29840 -9.92524 -9.49620 -8.49109 -7.74339 -5.16204
0.53271 1.16528 1.27363 1.43110 1.46996 1.49969 2.50581 2.57904
2.69888 3.15879 3.41121 3.57251 3.66346 3.76284 3.80390 3.95057
4.08911 4.14892 4.16503 4.19576 4.27639 4.32378 4.47623 4.53584
4.56061 4.66788 4.71619 4.75852 4.77374 4.93488 5.05622 5.14116
5.18434 5.31172 5.31777 5.38271 5.43223 5.47433 5.60433 5.72132
5.77216 5.81558 5.81771 5.86844 5.96890 6.46522 6.52665 6.89719
7.32787 7.50542 8.06803 8.44784 9.28832
Molecular weight = 338.19amu
Principal moments of inertia in cm(-1)
A = 0.013666 B = 0.003350 C = 0.003029
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2048.395548 B = 8355.201994 C = 9240.747148
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.915 5.915
2 C -0.021 4.021
3 Si 0.926 3.074
4 H -0.287 1.287
5 H -0.298 1.298
6 H -0.294 1.294
7 C -0.230 4.230
8 H 0.047 0.953
9 N -0.587 5.587
10 C 0.189 3.811
11 C -0.133 4.133
12 C -0.103 4.103
13 C -0.100 4.100
14 C -0.129 4.129
15 C 0.173 3.827
16 H 0.057 0.943
17 C 0.135 3.865
18 N -0.687 5.687
19 C 0.586 3.414
20 O -0.604 6.604
21 C -0.308 4.308
22 C 0.094 3.906
23 N -0.317 5.317
24 N -0.361 5.361
25 C 0.101 3.899
26 C 0.056 3.944
27 F -0.213 7.213
28 C 0.138 3.862
29 H 0.244 0.756
30 H 0.004 0.996
31 H 0.039 0.961
32 H 0.060 0.940
33 H 0.059 0.941
34 H 0.061 0.939
35 H 0.041 0.959
36 H 0.061 0.939
37 H 0.060 0.940
38 H 0.041 0.959
39 H 0.073 0.927
40 H 0.041 0.959
41 H 0.066 0.934
42 H 0.407 0.593
43 H 0.189 0.811
44 H 0.114 0.886
45 H 0.142 0.858
46 H 0.082 0.918
47 H 0.084 0.916
48 H 0.215 0.785
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.373 -5.868 9.017 10.846
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.561 5.561
2 C -0.218 4.218
3 Si 0.758 3.242
4 H -0.214 1.214
5 H -0.224 1.224
6 H -0.221 1.221
7 C -0.361 4.361
8 H 0.065 0.935
9 N -0.309 5.309
10 C 0.065 3.935
11 C -0.172 4.172
12 C -0.141 4.141
13 C -0.137 4.137
14 C -0.169 4.169
15 C 0.066 3.934
16 H 0.075 0.925
17 C 0.010 3.990
18 N -0.334 5.334
19 C 0.374 3.626
20 O -0.489 6.489
21 C -0.322 4.322
22 C -0.093 4.093
23 N -0.137 5.137
24 N -0.140 5.140
25 C -0.020 4.020
26 C 0.000 4.000
27 F -0.194 7.194
28 C -0.014 4.014
29 H 0.054 0.946
30 H 0.022 0.978
31 H 0.057 0.943
32 H 0.078 0.922
33 H 0.078 0.922
34 H 0.080 0.920
35 H 0.060 0.940
36 H 0.080 0.920
37 H 0.079 0.921
38 H 0.060 0.940
39 H 0.091 0.909
40 H 0.059 0.941
41 H 0.084 0.916
42 H 0.243 0.757
43 H 0.205 0.795
44 H 0.132 0.868
45 H 0.160 0.840
46 H 0.101 0.899
47 H 0.102 0.898
48 H 0.231 0.769
Dipole moment (debyes) X Y Z Total
from point charges -1.845 -5.281 9.906 11.377
hybrid contribution 0.766 1.280 -0.732 1.662
sum -1.079 -4.001 9.174 10.067
Atomic orbital electron populations
1.70081 1.05174 1.24816 1.56017 1.25163 0.95551 0.99020 1.02042
0.86003 0.78078 0.82836 0.77330 1.21423 1.22426 1.22139 1.18910
0.91320 0.85591 1.40260 0.93505 1.43755 1.32355 1.01889 1.52927
1.20785 0.87251 0.95571 0.89934 1.21943 0.97151 0.99335 0.98724
1.20908 0.96051 0.98913 0.98243 1.20265 0.99676 0.97660 0.96141
1.21282 0.98565 0.99755 0.97310 1.20675 0.94767 0.88327 0.89669
0.92502 1.21442 0.91887 0.95182 0.90470 1.45493 1.17747 1.58028
1.12096 1.17481 0.85808 0.77640 0.81646 1.90659 1.23108 1.59256
1.75855 1.20360 0.97097 1.17496 0.97271 1.24175 0.92914 0.94403
0.97831 1.77100 1.15148 1.24641 0.96803 1.48475 1.09008 1.43866
1.12615 1.22586 1.07233 0.93564 0.78595 1.22109 1.04160 0.92785
0.80961 1.92781 1.96841 1.86272 1.43554 1.23290 0.92039 0.91973
0.94114 0.94595 0.97754 0.94274 0.92178 0.92245 0.91995 0.93979
0.91988 0.92088 0.93985 0.90884 0.94099 0.91590 0.75698 0.79453
0.86763 0.83975 0.89935 0.89786 0.76864
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -48.13 11.03 21.65 0.24 -47.89 16
2 C -0.02 -1.09 4.89 84.86 0.41 -0.68 16
3 Si 0.93 44.41 29.58 68.60 2.03 46.44 16
4 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16
5 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16
6 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16
7 C -0.23 -11.29 7.65 84.03 0.64 -10.65 16
8 H 0.05 2.45 6.72 -2.91 -0.02 2.43 16
9 N -0.59 -24.89 1.78 -674.24 -1.20 -26.09 16
10 C 0.19 8.01 4.66 86.49 0.40 8.41 16
11 C -0.13 -4.37 5.71 30.22 0.17 -4.19 16
12 C -0.10 -3.22 5.51 29.76 0.16 -3.05 16
13 C -0.10 -2.75 5.15 28.60 0.15 -2.60 16
14 C -0.13 -3.98 5.06 29.38 0.15 -3.83 16
15 C 0.17 6.16 2.19 45.99 0.10 6.26 16
16 H 0.06 1.92 8.07 -2.39 -0.02 1.90 16
17 C 0.13 5.05 4.53 86.38 0.39 5.44 16
18 N -0.69 -26.66 4.71 -466.36 -2.19 -28.86 16
19 C 0.59 23.04 7.81 86.67 0.68 23.72 16
20 O -0.60 -26.44 16.90 -4.05 -0.07 -26.51 16
21 C -0.31 -10.34 6.13 -20.15 -0.12 -10.46 16
22 C 0.09 3.11 11.50 85.65 0.99 4.09 16
23 N -0.32 -9.54 12.33 -56.28 -0.69 -10.23 16
24 N -0.36 -8.48 3.65 -346.28 -1.26 -9.74 16
25 C 0.10 1.45 6.94 86.38 0.60 2.05 16
26 C 0.06 0.92 7.73 71.98 0.56 1.48 16
27 F -0.21 -3.93 17.36 44.97 0.78 -3.15 16
28 C 0.14 3.58 11.25 84.28 0.95 4.52 16
29 H 0.24 13.01 8.31 -92.71 -0.77 12.24 16
30 H 0.00 0.20 8.02 -2.39 -0.02 0.18 16
31 H 0.04 1.93 6.39 -2.39 -0.02 1.91 16
32 H 0.06 1.80 7.32 -2.39 -0.02 1.78 16
33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16
34 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16
35 H 0.04 1.58 7.48 -2.39 -0.02 1.57 16
36 H 0.06 1.56 7.36 -2.39 -0.02 1.54 16
37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16
38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16
39 H 0.07 1.92 8.11 -2.39 -0.02 1.90 16
40 H 0.04 1.75 6.83 -2.39 -0.02 1.73 16
41 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16
42 H 0.41 16.25 7.04 -92.71 -0.65 15.60 16
43 H 0.19 6.28 7.50 -2.91 -0.02 6.26 16
44 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16
45 H 0.14 1.15 8.06 -2.39 -0.02 1.14 16
46 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16
47 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16
48 H 0.21 4.20 8.06 -2.91 -0.02 4.17 16
Total: -1.00 -63.04 385.75 4.17 -58.87
By element:
Atomic # 1 Polarization: 26.34 SS G_CDS: 0.32 Total: 26.65 kcal
Atomic # 6 Polarization: 14.28 SS G_CDS: 6.23 Total: 20.51 kcal
Atomic # 7 Polarization: -117.70 SS G_CDS: -5.11 Total: -122.81 kcal
Atomic # 8 Polarization: -26.44 SS G_CDS: -0.07 Total: -26.51 kcal
Atomic # 9 Polarization: -3.93 SS G_CDS: 0.78 Total: -3.15 kcal
Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal
Total: -63.04 4.17 -58.87 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000968923078.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.388 kcal
(2) G-P(sol) polarization free energy of solvation -63.044 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.656 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.172 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.872 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.484 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds