Wall clock time and date at job start Tue Mar 31 2020 21:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36939 * 120.00058 * 2 1 4 4 H 1.08001 * 119.99978 * 203.48799 * 3 2 1 5 5 C 1.38811 * 120.00058 * 23.48460 * 3 2 1 6 6 N 1.31614 * 119.99905 * 15.10713 * 5 3 2 7 7 Si 1.86798 * 120.00085 * 195.10307 * 5 3 2 8 8 H 1.48498 * 109.47056 * 60.00272 * 7 5 3 9 9 H 1.48496 * 109.47304 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47035 * 300.00187 * 7 5 3 11 11 C 1.46498 * 120.00156 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.64494 * 178.31113 * 11 2 1 13 13 C 1.55154 * 110.72248 * 301.45377 * 11 2 1 14 14 C 1.54904 * 101.58667 * 154.03951 * 13 11 2 15 15 N 1.47419 * 104.83119 * 322.99185 * 14 13 11 16 16 C 1.34785 * 125.65015 * 204.08510 * 15 14 13 17 17 O 1.21278 * 120.00196 * 180.02562 * 16 15 14 18 18 C 1.50695 * 119.99730 * 0.02964 * 16 15 14 19 19 C 1.50701 * 109.47303 * 179.97438 * 18 16 15 20 20 C 1.36127 * 120.17068 * 265.00595 * 19 18 16 21 21 C 1.39333 * 120.98329 * 180.02562 * 20 19 18 22 22 C 1.36127 * 120.99452 * 359.97438 * 21 20 19 23 23 C 1.40500 * 119.65247 * 0.02562 * 22 21 20 24 24 C 1.40550 * 121.29494 * 179.97438 * 23 22 21 25 25 C 1.36086 * 119.65274 * 180.27262 * 24 23 22 26 26 C 1.39381 * 120.99509 * 359.49322 * 25 24 23 27 27 C 1.36094 * 120.98913 * 0.51084 * 26 25 24 28 28 C 1.40497 * 120.17409 * 85.01724 * 19 18 16 29 29 C 1.47023 * 108.70399 * 24.35532 * 15 14 13 30 30 H 1.09007 * 109.47233 * 275.21260 * 1 2 3 31 31 H 1.09001 * 109.47427 * 35.21045 * 1 2 3 32 32 H 1.09001 * 109.47410 * 155.21522 * 1 2 3 33 33 H 0.96997 * 120.00109 * 180.02562 * 6 5 3 34 34 H 1.09005 * 111.00645 * 35.96553 * 13 11 2 35 35 H 1.09002 * 111.03597 * 272.13551 * 13 11 2 36 36 H 1.08999 * 110.37364 * 204.15375 * 14 13 11 37 37 H 1.09001 * 110.46060 * 81.87515 * 14 13 11 38 38 H 1.09003 * 109.47246 * 59.99671 * 18 16 15 39 39 H 1.08999 * 109.47334 * 299.99668 * 18 16 15 40 40 H 1.08000 * 119.51243 * 0.02957 * 20 19 18 41 41 H 1.08008 * 119.50405 * 180.02562 * 21 20 19 42 42 H 1.07994 * 120.17459 * 180.02562 * 22 21 20 43 43 H 1.07992 * 120.17064 * 359.97438 * 24 23 22 44 44 H 1.07999 * 119.50053 * 179.72102 * 25 24 23 45 45 H 1.07995 * 119.50743 * 180.23693 * 26 25 24 46 46 H 1.08001 * 120.16667 * 179.72414 * 27 26 25 47 47 H 1.09005 * 109.88379 * 118.13112 * 29 15 14 48 48 H 1.09002 * 109.87964 * 239.29577 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1625 1.2246 -0.3728 5 6 1.5418 2.3383 0.4791 6 7 0.4427 2.2524 1.1979 7 14 2.2840 4.0109 0.1036 8 1 2.3288 4.2137 -1.3668 9 1 1.4520 5.0724 0.7250 10 1 3.6614 4.0762 0.6546 11 6 2.1975 -1.2687 0.0006 12 1 3.2726 -1.0917 -0.0296 13 6 1.8162 -2.1222 1.2389 14 6 2.1052 -3.5562 0.7293 15 7 1.6992 -3.5421 -0.6878 16 6 1.3359 -4.6195 -1.4117 17 8 1.0200 -4.4897 -2.5753 18 6 1.3221 -5.9852 -0.7749 19 6 0.8822 -7.0084 -1.7901 20 6 -0.4239 -7.3858 -1.8593 21 6 -0.8491 -8.3306 -2.7909 22 6 0.0290 -8.9034 -3.6591 23 6 1.3853 -8.5391 -3.6177 24 6 2.3216 -9.1090 -4.4974 25 6 3.6282 -8.7357 -4.4243 26 6 4.0527 -7.7870 -3.4956 27 6 3.1747 -7.2140 -2.6279 28 6 1.8179 -7.5780 -2.6698 29 6 1.7625 -2.1591 -1.1826 30 1 -0.3634 0.0934 1.0235 31 1 -0.3634 0.8396 -0.5925 32 1 -0.3634 -0.9330 -0.4308 33 1 0.0177 3.0576 1.5323 34 1 0.7618 -2.0010 1.4874 35 1 2.4473 -1.8763 2.0929 36 1 1.5139 -4.2831 1.2861 37 1 3.1673 -3.7850 0.8173 38 1 0.6288 -5.9870 0.0662 39 1 2.3233 -6.2312 -0.4210 40 1 -1.1413 -6.9462 -1.1821 41 1 -1.8913 -8.6122 -2.8251 42 1 -0.3151 -9.6341 -4.3761 43 1 2.0066 -9.8428 -5.2244 44 1 4.3463 -9.1785 -5.0985 45 1 5.0948 -7.5057 -3.4611 46 1 3.5189 -6.4835 -1.9108 47 1 2.4908 -2.0873 -1.9905 48 1 0.7802 -1.8470 -1.5375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972786438.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:37 Heat of formation + Delta-G solvation = 38.957107 kcal Electronic energy + Delta-G solvation = -28654.213106 eV Core-core repulsion = 24867.560552 eV Total energy + Delta-G solvation = -3786.652554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.77933 -39.58036 -37.50919 -36.57224 -34.78877 -33.86925 -31.69908 -30.45435 -30.35862 -29.75526 -28.43140 -27.03157 -26.04564 -23.74653 -23.29783 -23.10120 -22.31258 -21.15313 -19.28847 -18.94619 -17.67896 -17.13204 -17.06172 -16.86445 -16.39669 -15.90266 -15.12308 -14.98333 -14.54143 -14.30952 -14.09188 -13.71564 -13.60828 -13.46206 -13.37418 -13.24495 -12.87023 -12.69459 -12.47412 -12.33924 -12.02398 -11.97981 -11.69169 -11.43408 -11.37074 -11.05666 -11.00921 -10.89270 -10.78314 -10.59944 -10.50001 -10.27265 -10.04121 -9.90387 -9.88875 -9.57978 -8.70280 -8.59761 -8.32568 -7.95959 -6.82713 -5.78471 -3.25747 0.40244 0.92584 1.91749 2.81392 2.85810 3.25481 3.36595 3.42503 3.44097 4.01138 4.34344 4.45210 4.61007 4.67959 4.74544 4.76811 4.87299 5.00266 5.02360 5.07744 5.22474 5.24935 5.27133 5.33340 5.37673 5.40058 5.53424 5.54922 5.62434 5.76867 5.84166 5.88750 5.97868 6.00335 6.09338 6.12345 6.29634 6.30897 6.38238 6.41355 6.52334 6.55509 6.62918 6.70952 6.78349 6.86225 6.89779 7.30339 7.66339 7.75511 7.78655 8.32643 8.38631 9.16356 9.79261 10.28379 11.26192 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.022138 B = 0.002312 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.517881 B =12107.757817 C =12569.239296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.585 5.585 3 C -0.262 4.262 4 H 0.069 0.931 5 C 0.006 3.994 6 N -0.903 5.903 7 Si 0.906 3.094 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.150 4.150 14 C 0.098 3.902 15 N -0.613 5.613 16 C 0.525 3.475 17 O -0.535 6.535 18 C -0.102 4.102 19 C -0.047 4.047 20 C -0.106 4.106 21 C -0.111 4.111 22 C -0.111 4.111 23 C -0.051 4.051 24 C -0.108 4.108 25 C -0.118 4.118 26 C -0.119 4.119 27 C -0.100 4.100 28 C -0.034 4.034 29 C 0.087 3.913 30 H 0.034 0.966 31 H 0.040 0.960 32 H 0.003 0.997 33 H 0.254 0.746 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.060 0.940 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.758 -24.392 -4.103 24.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.305 5.305 3 C -0.392 4.392 4 H 0.087 0.913 5 C -0.193 4.193 6 N -0.547 5.547 7 Si 0.735 3.265 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.191 4.191 14 C -0.026 4.026 15 N -0.348 5.348 16 C 0.312 3.688 17 O -0.412 6.412 18 C -0.141 4.141 19 C -0.047 4.047 20 C -0.124 4.124 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.051 4.051 24 C -0.126 4.126 25 C -0.136 4.136 26 C -0.137 4.137 27 C -0.118 4.118 28 C -0.034 4.034 29 C -0.037 4.037 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.022 0.978 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.078 0.922 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.437 -24.186 -4.697 24.758 hybrid contribution 0.283 1.052 -0.063 1.091 sum 2.720 -23.134 -4.761 23.775 Atomic orbital electron populations 1.20798 0.82569 0.95673 0.99617 1.43840 1.01800 0.99898 1.85012 1.19154 0.98857 0.85356 1.35811 0.91323 1.25014 0.98072 0.98587 0.97648 1.70059 1.21009 1.27567 1.36062 0.86324 0.78358 0.83675 0.78104 1.20999 1.21626 1.20858 1.21294 0.96314 0.85989 0.90146 0.90403 1.23379 1.02904 0.92485 1.00324 1.22392 0.99385 0.99513 0.81280 1.48533 1.66202 1.07708 1.12342 1.20032 0.77585 0.84867 0.86287 1.90728 1.48133 1.85818 1.16519 1.20686 1.04366 0.91092 0.97996 1.19134 0.93595 0.95888 0.96090 1.20706 0.95044 0.97548 0.99148 1.20794 0.99699 0.96792 0.95598 1.20980 0.92205 1.00361 0.99369 1.18047 0.94018 0.96900 0.96135 1.20990 0.93146 0.99975 0.98506 1.20828 0.96057 0.97924 0.98810 1.20836 0.99832 0.97086 0.95929 1.21036 0.92308 0.99097 0.99368 1.17846 0.93565 0.96322 0.95672 1.22735 1.02285 0.79791 0.98872 0.94778 0.94165 0.97843 0.93602 0.90619 0.90335 0.91354 0.91605 0.87839 0.88003 0.85979 0.85918 0.85719 0.85730 0.86119 0.86047 0.85913 0.92207 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.81 7.70 59.84 0.46 4.27 16 2 N -0.59 -14.15 2.93 -171.38 -0.50 -14.65 16 3 C -0.26 -7.01 9.59 -15.06 -0.14 -7.15 16 4 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 5 C 0.01 0.16 5.06 -17.43 -0.09 0.07 16 6 N -0.90 -25.76 10.86 55.49 0.60 -25.15 16 7 Si 0.91 21.49 29.58 -169.99 -5.03 16.46 16 8 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 C 0.17 3.35 3.42 -66.09 -0.23 3.13 16 12 H 0.08 1.49 7.93 -51.93 -0.41 1.08 16 13 C -0.15 -2.43 6.65 -24.59 -0.16 -2.60 16 14 C 0.10 1.23 6.69 -2.54 -0.02 1.22 16 15 N -0.61 -9.52 3.33 -170.52 -0.57 -10.09 16 16 C 0.52 8.21 7.84 -10.98 -0.09 8.12 16 17 O -0.54 -10.63 16.36 5.56 0.09 -10.54 16 18 C -0.10 -1.16 4.23 -29.04 -0.12 -1.28 16 19 C -0.05 -0.59 4.38 -104.53 -0.46 -1.04 16 20 C -0.11 -1.23 9.57 -39.93 -0.38 -1.61 16 21 C -0.11 -1.15 9.95 -39.93 -0.40 -1.54 16 22 C -0.11 -1.16 9.77 -39.49 -0.39 -1.54 16 23 C -0.05 -0.61 5.74 -106.83 -0.61 -1.22 16 24 C -0.11 -1.09 9.77 -39.48 -0.39 -1.47 16 25 C -0.12 -1.13 9.95 -39.93 -0.40 -1.53 16 26 C -0.12 -1.23 9.95 -39.93 -0.40 -1.63 16 27 C -0.10 -1.19 9.28 -39.48 -0.37 -1.56 16 28 C -0.03 -0.44 5.74 -106.84 -0.61 -1.05 16 29 C 0.09 1.61 6.41 -3.06 -0.02 1.59 16 30 H 0.03 0.88 7.32 -51.92 -0.38 0.50 16 31 H 0.04 1.05 7.43 -51.93 -0.39 0.67 16 32 H 0.00 0.07 6.30 -51.93 -0.33 -0.26 16 33 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.08 1.35 7.28 -51.93 -0.38 0.97 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.07 0.70 7.48 -51.93 -0.39 0.31 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 0.95 7.75 -51.93 -0.40 0.55 16 39 H 0.10 0.94 6.70 -51.93 -0.35 0.59 16 40 H 0.12 1.21 8.05 -52.49 -0.42 0.79 16 41 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.12 1.34 6.49 -52.49 -0.34 1.00 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.07 1.50 6.15 -51.93 -0.32 1.18 16 LS Contribution 385.82 15.07 5.81 5.81 Total: -1.00 -32.81 385.82 -11.43 -44.24 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.03 Total: 0.75 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -4.80 Total: -6.83 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.47 Total: -49.90 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.81 -11.43 -44.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972786438.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.198 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds